mRNA_P-wetherbeei_contig20310.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20310.1.1
Unique NamemRNA_P-wetherbeei_contig20310.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A7V1LLE2_9BACT (Uncharacterized protein n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V1LLE2_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-13
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAEKRRKAEED 312
            EVR HE  HL  AG  A  GP  DM E   + K Y   G V+I+ ++V GDP +TI+K ++I++A+  P +PS +D  VAAEA    ++ E+E  ++ +K E++
Sbjct:   26 EVRSHEQAHLRAAGSLARGGPDFDM-ETGPDNKQYAVGGNVEIDTSKVEGDPQRTIEKARQIQKAALAPADPSSKDRNVAAEA----RRMELEAQKELKKMEQE 124          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A1T1HF26_OCELI (Uncharacterized protein n=1 Tax=Oceanospirillum linum TaxID=966 RepID=A0A1T1HF26_OCELI)

HSP 1 Score: 70.5 bits (171), Expect = 2.500e-12
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAEK 291
            EVR HE  H    G +A S P  DMTE   +G+ Y   G+V I+ + V  DP  T+ K + +ERA+  P +PS+QDLKVAAEA     +A +E+ E+
Sbjct:   63 EVRAHEEAHASVGGRYA-SAPSYDMTE-GPDGREYAVGGQVTIDTSPVPDDPEATLDKSQVVERAALAPAQPSEQDLKVAAEARAMGNEARVEILER 157          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: UPI000A027ED2 (hypothetical protein n=1 Tax=Methylomarinum vadi TaxID=438855 RepID=UPI000A027ED2)

HSP 1 Score: 67.8 bits (164), Expect = 8.210e-12
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIEL 282
            EVR HE  HL  AG  A+ G          +GK Y   G+V I+IAE++GDP  T++K   I RA+  P +PS QD +VA +A     +A++EL
Sbjct:   63 EVRAHEQAHLGAAGNLALGGANFTYAT-GLDGKRYAIGGEVNIDIAEIAGDPEATLKKADMIRRAALAPSKPSSQDQRVAGKAAAMANQAQLEL 155          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: UPI00145D45E4 (hypothetical protein n=1 Tax=Alteromonas ponticola TaxID=2720613 RepID=UPI00145D45E4)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIEL 282
            EVR+HE  H    G++A S P  +  E+  +GK Y   G+V I+I+E +  P KTIQKM+++  A+  P++PS QDLKVAAEA  K  +A+ EL
Sbjct:  129 EVRRHEEAHASVGGQYAGS-PQYEY-EEGPDGKRYAVGGEVSIDISEAA-TPEKTIQKMEQVRAAALAPEQPSQQDLKVAAEAQQKSAEAKAEL 219          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: UPI001F48C5C3 (hypothetical protein n=1 Tax=Pseudomonas guryensis TaxID=2759165 RepID=UPI001F48C5C3)

HSP 1 Score: 65.5 bits (158), Expect = 8.820e-11
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAE 288
            EVR HE  H    G +A  G      ++  +GKSYV SG+V I+++ +  DP  T++KM+ ++RA+  P EPS QD +VAA+A     +A  +LA+
Sbjct:   40 EVRAHEQAHAAVGGAYA--GAPAYTYKRGPDGKSYVVSGEVSIDVSPIPNDPQATLRKMEVVQRAALAPAEPSSQDRRVAAQAQALAAQARTDLAQ 133          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A4Q6YSB7_9GAMM (Catalase n=3 Tax=Pseudoalteromonadaceae TaxID=267888 RepID=A0A4Q6YSB7_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 9.090e-11
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELA 285
            EVR HE  H    G++A S P  +  ++  +G +Y   G+VQI++AEVSGDP  TI KM+ +  A+  P EPS  D  +AA+A  K   A+ ELA
Sbjct:  124 EVRVHEQAHASVGGKYAGS-PSYEY-QRGPDGTNYAVGGEVQIDVAEVSGDPQATIDKMQTVRAAALAPQEPSSADRAIAADATQKLAAAQAELA 216          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A0N1MSB9_9GAMM (Catalase n=4 Tax=Pseudoalteromonadaceae TaxID=267888 RepID=A0A0N1MSB9_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 1.260e-10
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELA 285
            EVR HE  H    G++A S P  D  ++  +G +Y   G+VQI++AE+ GDP  TI+KM+ +  A+  P EPS  D  +AA+A  K   A+ ELA
Sbjct:  124 EVRIHEQAHASVGGQYAGS-PSYDY-QRGPDGTNYAVGGEVQIDVAEIEGDPKATIEKMQTVRAAALAPAEPSGADRSIAADATQKLAAAQAELA 216          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A0W1L147_9GAMM (Catalase n=3 Tax=unclassified Pseudoalteromonas TaxID=194690 RepID=A0A0W1L147_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.780e-10
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIEL 282
            EVR HE  H    G++A S P  +  ++  +G++Y   G+VQI++AE+ GDP  TI+KM+ +  A+  P EPS  D  +AA+A  K   A++EL
Sbjct:  127 EVRVHEQAHASVGGQYAGS-PSYEY-QRGPDGQNYAVGGEVQIDVAEIEGDPQATIEKMQTVRAAALAPAEPSGADRAIAADATQKLSAAQVEL 218          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A7W4D917_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas guryensis TaxID=2759165 RepID=A0A7W4D917_9PSED)

HSP 1 Score: 65.5 bits (158), Expect = 1.810e-10
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAE 288
            EVR HE  H    G +A  G      ++  +GKSYV SG+V I+++ +  DP  T++KM+ ++RA+  P EPS QD +VAA+A     +A  +LA+
Sbjct:   96 EVRAHEQAHAAVGGAYA--GAPAYTYKRGPDGKSYVVSGEVSIDVSPIPNDPQATLRKMEVVQRAALAPAEPSSQDRRVAAQAQALAAQARTDLAQ 189          
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Match: A0A3S0IGX6_9GAMM (Uncharacterized protein n=1 Tax=Shewanella atlantica TaxID=271099 RepID=A0A3S0IGX6_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 2.720e-10
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 EVRKHENDHLMEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMKKIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAEKR 294
            EV+ HE+ H    G  A S P     E+ S+G  Y   G+V I+I+ V GDPL TI KM+K+  A+  P  PS  D++VAA+A  K  +A+ EL EKR
Sbjct:  251 EVKAHEHAHSSVGGSLAQS-PQFSY-ERGSDGNRYAVDGEVSIDISIVQGDPLATINKMRKVYAAAMAPANPSMADIRVAADALRKINQAQSELVEKR 346          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20310.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V1LLE2_9BACT1.050e-1340.38Uncharacterized protein n=1 Tax=Caldithrix abyssi ... [more]
A0A1T1HF26_OCELI2.500e-1243.30Uncharacterized protein n=1 Tax=Oceanospirillum li... [more]
UPI000A027ED28.210e-1241.49hypothetical protein n=1 Tax=Methylomarinum vadi T... [more]
UPI00145D45E41.660e-1145.74hypothetical protein n=1 Tax=Alteromonas ponticola... [more]
UPI001F48C5C38.820e-1139.58hypothetical protein n=1 Tax=Pseudomonas guryensis... [more]
A0A4Q6YSB7_9GAMM9.090e-1143.16Catalase n=3 Tax=Pseudoalteromonadaceae TaxID=2678... [more]
A0A0N1MSB9_9GAMM1.260e-1042.11Catalase n=4 Tax=Pseudoalteromonadaceae TaxID=2678... [more]
A0A0W1L147_9GAMM1.780e-1040.43Catalase n=3 Tax=unclassified Pseudoalteromonas Ta... [more]
A0A7W4D917_9PSED1.810e-1039.58Uncharacterized protein n=1 Tax=Pseudomonas guryen... [more]
A0A3S0IGX6_9GAMM2.720e-1043.88Uncharacterized protein n=1 Tax=Shewanella atlanti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20310contigP-wetherbeei_contig20310:1..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1046714.AMRX01000003_gene196
PFAMsSprA-related
Model size327
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-11
EggNOG OGsCOG3064@1|root,COG3064@2|Bacteria,1MZUF@1224|Proteobacteria,1S95Z@1236|Gammaproteobacteria,465PP@72275|Alteromonadaceae
DescriptionSprA-related family
Cds size297
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.3709753-UTR-P-wetherbeei_contig20310:0..301683186196.3709753-UTR-P-wetherbeei_contig20310:0..30Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20310 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.3808591-CDS-P-wetherbeei_contig20310:30..3271683186196.3808591-CDS-P-wetherbeei_contig20310:30..327Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20310 31..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20310.1.1prot_P-wetherbeei_contig20310.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20310 31..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20310.1.1

>prot_P-wetherbeei_contig20310.1.1 ID=prot_P-wetherbeei_contig20310.1.1|Name=mRNA_P-wetherbeei_contig20310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MEAGEFAISGPLLDMTEQASNGKSYVTSGKVQINIAEVSGDPLKTIQKMK
KIERASKKPDEPSDQDLKVAAEAGVKRQKAEIELAEKRRKAEEDKRNGI
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mRNA from alignment at P-wetherbeei_contig20310:1..327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20310.1.1 ID=mRNA_P-wetherbeei_contig20310.1.1|Name=mRNA_P-wetherbeei_contig20310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20310:1..327+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTCCGCAAGCACGAGAACGACCATCTGATGGAAGCCGGGGAGTTTGC TATCTCGGGGCCGCTCCTGGATATGACGGAGCAGGCCAGCAACGGTAAAT CCTACGTCACGAGCGGTAAAGTTCAGATCAACATCGCGGAAGTGAGCGGC GACCCGCTCAAGACAATCCAAAAGATGAAGAAGATCGAACGAGCCTCCAA GAAGCCAGACGAGCCTTCCGATCAGGATTTGAAAGTGGCGGCCGAAGCCG GGGTCAAGCGCCAGAAAGCCGAGATCGAGCTTGCCGAGAAGCGCCGCAAG GCCGAGGAAGATAAGCGCAACGGAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20310:1..327+

>mRNA_P-wetherbeei_contig20310.1.1 ID=mRNA_P-wetherbeei_contig20310.1.1|Name=mRNA_P-wetherbeei_contig20310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig20310:1..327+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCCGGGGAGTTTGCTATCTCGGGGCCGCTCCTGGATATGACGGA
GCAGGCCAGCAACGGTAAATCCTACGTCACGAGCGGTAAAGTTCAGATCA
ACATCGCGGAAGTGAGCGGCGACCCGCTCAAGACAATCCAAAAGATGAAG
AAGATCGAACGAGCCTCCAAGAAGCCAGACGAGCCTTCCGATCAGGATTT
GAAAGTGGCGGCCGAAGCCGGGGTCAAGCGCCAGAAAGCCGAGATCGAGC
TTGCCGAGAAGCGCCGCAAGGCCGAGGAAGATAAGCGCAACGGAATC
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