mRNA_P-wetherbeei_contig20267.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20267.1.1
Unique NamemRNA_P-wetherbeei_contig20267.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A3C0TYZ6_9PROT (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYZ6_9PROT)

HSP 1 Score: 170 bits (431), Expect = 9.920e-53
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    4 PQTIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            P+TII+ADDDNAIRTVLNQAL RLGYNVRSTGNL+NLWRW+SEG GDLLITDV+MPDGNVFD+LPRIKK RPGLP+IVMSAQNTLMTALKA
Sbjct:    8 PETIIIADDDNAIRTVLNQALARLGYNVRSTGNLSNLWRWISEGAGDLLITDVVMPDGNVFDILPRIKKQRPGLPVIVMSAQNTLMTALKA 98
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A3C1FKP9_9PROT (DNA-binding transcriptional regulator NtrC n=8 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FKP9_9PROT)

HSP 1 Score: 166 bits (419), Expect = 2.830e-47
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    7 QTIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKAA 279
            +TI+VADDDNAIRTVLNQALVR+GY VRS GNLANLWRW++EGEGDLLITDV++PDGNVFD+LPRIKKHRP LPIIVMSAQNTLMTA+KAA
Sbjct:    5 ETILVADDDNAIRTVLNQALVRVGYQVRSAGNLANLWRWVAEGEGDLLITDVVLPDGNVFDLLPRIKKHRPDLPIIVMSAQNTLMTAVKAA 95
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A353R1G7_9GAMM (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A353R1G7_9GAMM)

HSP 1 Score: 166 bits (419), Expect = 2.260e-46
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    7 QTIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKAA 279
            +TI+VADDDNAIRTVLNQALVR+GY VRS GNLANLWRW++EGEGDLLITDV++PDGNVFD+LPRIKKHRP LPIIVMSAQNTLMTA+KAA
Sbjct:    5 ETILVADDDNAIRTVLNQALVRVGYQVRSAGNLANLWRWVAEGEGDLLITDVVLPDGNVFDLLPRIKKHRPDLPIIVMSAQNTLMTAVKAA 95
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A357CGA0_9HYPH (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A357CGA0_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 1.300e-41
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:   13 IIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            I++ADDD AIRTVLNQAL R GY  R+TGN A LWRW+S+GEGDL+ITDV+MPD N FD++PR+KK RPGLPIIVMSAQNT MTA++A
Sbjct:    6 ILIADDDAAIRTVLNQALARAGYAPRATGNAATLWRWISQGEGDLVITDVLMPDENAFDLIPRVKKLRPGLPIIVMSAQNTFMTAIRA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: UPI001EE35E34 (sigma 54-interacting transcriptional regulator n=1 Tax=Methylobacterium gnaphalii TaxID=1010610 RepID=UPI001EE35E34)

HSP 1 Score: 143 bits (361), Expect = 5.080e-41
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:   13 IIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            IIVADDD AIRTVLNQAL R GY VRSTGN A LWRW+++GEGDL+ITDVMMPD NVFD+LPRIK+ RP LPIIVMSAQNT MTA++A
Sbjct:    6 IIVADDDAAIRTVLNQALSRAGYEVRSTGNCATLWRWVAQGEGDLVITDVMMPDENVFDLLPRIKRVRPELPIIVMSAQNTFMTAIRA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A537S8E3_9PROT (Response regulator (Fragment) n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537S8E3_9PROT)

HSP 1 Score: 141 bits (356), Expect = 3.310e-40
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:   10 TIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            +I+VADDD AIRTVLNQAL R GY VR TGN A LWRW+S+GEGDL+ITDV+MPD N FD+LPRIKK RP LP+IVMSAQNT MTA++A
Sbjct:    5 SILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDENAFDLLPRIKKMRPNLPVIVMSAQNTFMTAIRA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A3M1JY76_9PROT (Response regulator (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JY76_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.380e-39
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   13 IIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKAA 279
            I++ADDD AIRTVLNQAL R GY+ R+TGN A LW+W+S+G+GDL+ITDV+MPD N FD+LPR+KK RP LPIIVMSAQNTLMTA+ AA
Sbjct:    6 ILIADDDAAIRTVLNQALARAGYSPRATGNAATLWQWISQGQGDLVITDVVMPDENAFDLLPRVKKVRPDLPIIVMSAQNTLMTAITAA 94
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A2H6BAS0_9HYPH (DNA-binding transcriptional regulator NtrC n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2H6BAS0_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 5.960e-39
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 MPQ-TIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            MPQ +I+VADDD AIRTVLNQAL R GY VRSTGN A LWRW+S+G+GDL+ITDV+MPD N FDMLPRIKK RP LP++VMSAQNT MTA++A
Sbjct:    1 MPQGSILVADDDAAIRTVLNQALSRAGYEVRSTGNAATLWRWVSQGDGDLVITDVVMPDENAFDMLPRIKKARPELPVVVMSAQNTFMTAIRA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: B6JDY6_AFIC5 (DNA-binding transcriptional regulator NtrC n=6 Tax=Bradyrhizobiaceae TaxID=41294 RepID=B6JDY6_AFIC5)

HSP 1 Score: 143 bits (361), Expect = 8.330e-39
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   10 TIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            +I+VADDD AIRTVLNQAL+R GY VR TGN A LWRW+S+GEGDL+ITDV+MPD N FD+LPRIKK RP LP+IVMSAQNT MTA++A
Sbjct:    5 SILVADDDTAIRTVLNQALIRAGYEVRLTGNAATLWRWVSQGEGDLIITDVVMPDENAFDLLPRIKKLRPNLPVIVMSAQNTFMTAIRA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Match: A0A5B2VDN7_9HYPH (DNA-binding transcriptional regulator NtrC n=1 Tax=Salinarimonas soli TaxID=1638099 RepID=A0A5B2VDN7_9HYPH)

HSP 1 Score: 143 bits (361), Expect = 8.450e-39
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:   13 IIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLLITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKA 276
            I++ADDD AIRTVLNQAL R GY VRSTGN A LWRW+S+GEGDL+ITDV+MPD N FD+LPRIKK RP LPIIVMSAQNT MTA+KA
Sbjct:    6 ILLADDDAAIRTVLNQALARAGYEVRSTGNAATLWRWVSQGEGDLVITDVVMPDENAFDLLPRIKKSRPELPIIVMSAQNTFMTAIKA 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYZ6_9PROT9.920e-5389.01Nitrogen regulation protein NR(I) (Fragment) n=1 T... [more]
A0A3C1FKP9_9PROT2.830e-4786.81DNA-binding transcriptional regulator NtrC n=8 Tax... [more]
A0A353R1G7_9GAMM2.260e-4686.81Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A357CGA0_9HYPH1.300e-4173.86Nitrogen regulation protein NR(I) (Fragment) n=1 T... [more]
UPI001EE35E345.080e-4179.55sigma 54-interacting transcriptional regulator n=1... [more]
A0A537S8E3_9PROT3.310e-4075.28Response regulator (Fragment) n=2 Tax=Alphaproteob... [more]
A0A3M1JY76_9PROT1.380e-3973.03Response regulator (Fragment) n=1 Tax=Alphaproteob... [more]
A0A2H6BAS0_9HYPH5.960e-3975.27DNA-binding transcriptional regulator NtrC n=6 Tax... [more]
B6JDY6_AFIC58.330e-3975.28DNA-binding transcriptional regulator NtrC n=6 Tax... [more]
A0A5B2VDN7_9HYPH8.450e-3978.41DNA-binding transcriptional regulator NtrC n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20267contigP-wetherbeei_contig20267:327..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1101190.ARWB01000001_gene1490
Preferred namentrC
PFAMsHTH_8,Response_reg,Sigma54_activ_2,Sigma54_activat
Model size279
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07712
KEGG Pathwayko02020,map02020
KEGG ModuleM00497
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.64e-40
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,36X7S@31993|Methylocystaceae
DescriptionSigma-54 interaction domain
Cds size279
COG categoryT
BRITEko00000,ko00001,ko00002,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.1534543-CDS-P-wetherbeei_contig20267:326..6051683186195.1534543-CDS-P-wetherbeei_contig20267:326..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20267 327..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20267.1.1prot_P-wetherbeei_contig20267.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20267 327..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20267.1.1

>prot_P-wetherbeei_contig20267.1.1 ID=prot_P-wetherbeei_contig20267.1.1|Name=mRNA_P-wetherbeei_contig20267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MPQTIIVADDDNAIRTVLNQALVRLGYNVRSTGNLANLWRWMSEGEGDLL
ITDVMMPDGNVFDMLPRIKKHRPGLPIIVMSAQNTLMTALKAA
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mRNA from alignment at P-wetherbeei_contig20267:327..605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20267.1.1 ID=mRNA_P-wetherbeei_contig20267.1.1|Name=mRNA_P-wetherbeei_contig20267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig20267:327..605- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCAAACCATCATTGTCGCCGATGATGATAACGCCATCCGTACGGT
GCTGAACCAGGCGCTGGTGCGGCTTGGTTACAATGTACGCTCCACTGGCA
ATCTCGCAAATCTGTGGCGCTGGATGTCAGAGGGCGAGGGTGATCTGCTT
ATCACCGATGTGATGATGCCGGATGGCAATGTATTTGACATGTTGCCGCG
CATCAAAAAACATCGTCCGGGATTGCCTATCATTGTTATGAGCGCGCAAA
ACACACTGATGACGGCGCTCAAGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20267:327..605-

>mRNA_P-wetherbeei_contig20267.1.1 ID=mRNA_P-wetherbeei_contig20267.1.1|Name=mRNA_P-wetherbeei_contig20267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig20267:327..605- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCAAACCATCATTGTCGCCGATGATGATAACGCCATCCGTACGGT
GCTGAACCAGGCGCTGGTGCGGCTTGGTTACAATGTACGCTCCACTGGCA
ATCTCGCAAATCTGTGGCGCTGGATGTCAGAGGGCGAGGGTGATCTGCTT
ATCACCGATGTGATGATGCCGGATGGCAATGTATTTGACATGTTGCCGCG
CATCAAAAAACATCGTCCGGGATTGCCTATCATTGTTATGAGCGCGCAAA
ACACACTGATGACGGCGCTCAAGGCGGCG
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