mRNA_P-wetherbeei_contig20217.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20217.1.1
Unique NamemRNA_P-wetherbeei_contig20217.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A835YSJ0_9STRA (50S ribosomal protein L28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.290e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   25 ALYQAAAFVLPASAFNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
            AL  A+A    A+ F GA LAS   AA S+S  L MRTR CDLTGK ANRKARVVTFSHTRNHKVQEVNL  KRIF
Sbjct:   10 ALLVASAAAFSATTFAGAKLASHKSAAASSS-GLVMRTRNCDLTGKSANRKARVVTFSHTRNHKVQEVNLHTKRIF 84          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A835Z921_9STRA (50S ribosomal protein L28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z921_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-18
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   67 FNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
            F G  LAS   +A  AS AL MRTR CDLTGK ANRKARVVTFSHTRNHKVQEVNL  KR+F
Sbjct:   26 FTGTHLASHTASA--ASSALVMRTRSCDLTGKSANRKARVVTFSHTRNHKVQEVNLHTKRMF 85          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: F0YN12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN12_AURAN)

HSP 1 Score: 78.6 bits (192), Expect = 7.390e-17
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
            +AS A EM+ R+CD+TGKR N KA  VTFSHTRNHKVQ+VNLQ++R++W+EG
Sbjct:   32 TASAAPEMKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEG 83          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.860e-16
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   37 AAAFVLPASAFNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEGK 267
            A+ F++  SAF G+++ S+  +A S + +L+MR R CDL GK+ NRKARVVTFSH R HKVQ +NLQ ++++W EGK
Sbjct:   18 ASGFMIAPSAFAGSSVVSK-SSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGK 93          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S3ZMH3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMH3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.730e-15
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  112 ASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
            A+ A EM+ R+CDLTGKR N KA  VTFSHTRNHKVQ+VNLQ++R++W EG
Sbjct:  130 AAAAPEMKFRVCDLTGKRRNAKAMTVTFSHTRNHKVQQVNLQDRRLWWPEG 180          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.880e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  112 ASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
            A  ++ M+ R CDLTGKR N KA  VTFSHTRNHKVQ+VNLQ ++++W EG
Sbjct:   33 APSSVSMKFRTCDLTGKRRNAKAMTVTFSHTRNHKVQKVNLQNRKLWWEEG 83          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A448ZBR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.350e-14
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
            S + ++EMR R CDL GK+ANRKARVVTFSH R HKVQEVNLQ KR F
Sbjct:   36 SGAASMEMRARECDLLGKKANRKARVVTFSHKRIHKVQEVNLQTKRFF 83          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S2RVK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.400e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
            +A++ + MR R CDLTGKR NR+A  VTFSH RN KVQ VNLQ+K+++W EG
Sbjct:   68 TAAREVSMRARFCDLTGKRPNRQAMAVTFSHKRNKKVQAVNLQKKKLWWPEG 119          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S2REE2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REE2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.760e-13
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   58 ASAFNGAALASQVGAAI----SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
            ASAF G  L +   AA     S + +L MR R CDL GK+ANRKARVVTFSH R HKVQ VNLQ KR +
Sbjct:    1 ASAFTGTPLQTSRSAASRHSRSGASSLVMRERACDLLGKKANRKARVVTFSHKRIHKVQAVNLQWKRFY 69          
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A6U3T0T0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T0T0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.010e-12
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   64 AFNGAALAS--QVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKR 246
            AF G +L +  +V    + + ++ MRTR+CDL GK+ANRKARVVTFSH R HKVQEVNLQ KR
Sbjct:   70 AFTGTSLQTTPRVSRTQNGASSMMMRTRVCDLLGKKANRKARVVTFSHKRIHKVQEVNLQWKR 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSJ0_9STRA5.290e-2069.7450S ribosomal protein L28 n=1 Tax=Tribonema minus ... [more]
A0A835Z921_9STRA1.250e-1874.1950S ribosomal protein L28 n=1 Tax=Tribonema minus ... [more]
F0YN12_AURAN7.390e-1767.31Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D7G312_ECTSI1.860e-1653.2550S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID... [more]
A0A7S3ZMH3_9STRA1.730e-1568.63Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3NJI8_9STRA3.880e-1462.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A448ZBR3_9STRA8.350e-1472.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2RVK4_9STRA2.400e-1361.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2REE2_9STRA6.760e-1359.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U3T0T0_9STRA1.010e-1260.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20217contigP-wetherbeei_contig20217:237..1232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009041830.1
Preferred namePRPL28
PFAMsRibosomal_L28
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K02902
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons3
Evalue1.21e-17
EggNOG OGsCOG0227@1|root,2S1B9@2759|Eukaryota
Ec32 ortholog description50S ribosomal protein L28
Ec32 orthologEc-09_004120.1
Descriptionstructural constituent of ribosome
Cds size270
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.761948-CDS-P-wetherbeei_contig20217:236..3491683186193.761948-CDS-P-wetherbeei_contig20217:236..349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20217 237..349 -
1683186193.7726078-CDS-P-wetherbeei_contig20217:602..6591683186193.7726078-CDS-P-wetherbeei_contig20217:602..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20217 603..659 -
1683186193.7813115-CDS-P-wetherbeei_contig20217:1132..12321683186193.7813115-CDS-P-wetherbeei_contig20217:1132..1232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20217 1133..1232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20217.1.1prot_P-wetherbeei_contig20217.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20217 237..1232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20217.1.1

>prot_P-wetherbeei_contig20217.1.1 ID=prot_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
LFVIAALAALYQAAAFVLPASAFNGAALASQVGAAISASQALEMRTRICD
LTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEGK*
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mRNA from alignment at P-wetherbeei_contig20217:237..1232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20217.1.1 ID=mRNA_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=996bp|location=Sequence derived from alignment at P-wetherbeei_contig20217:237..1232- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCGTTATCGCGGCCCTTGCGGCCTTATATCAGGCAGCAGCTTTCGT CCTGCCGGCTTCCGCTTTCAACGGAGCTGCACTCGCATCACAGGTGGGAG GTCCACGAATTTTGGCGCCTGAGATAACCAGAGGAGTGGTTTAAAGGGCA CCATAGCACTTCTTGACGATTGAGCTTGATATTCCAATCCGTCGAGCTTA TCCTGTTTCGGATTTTCCCTTTGTTGGGACTCGTTCATGCCGCAGTAAGT GTTTGGGACTGCAAGTGTCAGAAAAGATTCAAGAGGCTTCACCATCGTGA AACGGCGCCACCATTGTAAAAACACTCCTCCTGTGCTTAATCCCTGGGCC CATCTGATGTAGCCCCATGTTCTGACCGTGTTCCCCTTCAGCATATAGTT TTTGTGTAAGTCATGTCCGCCGTTACATGGCGTAAACGCTCCCAGGTCTT TTTGCCTATGATGAGAACTACGTGATATCATTCCTCCCTCGTCTCACGAA CGAGAACCCGCCAACTGACGGCCTATTCCACATTTCCTTTTGTGTAAAAA ACGCAACCACAAGGCTGGACCAGCTGCTATTTCGGCATCCCAGGCCTTGG AGATGCGGACAAGAATCTGCGACCTTACCGGTAAGCAGAGAAGATGTGCT TTTGGGATTCCTGGGCATTACCTTGCTTTCTGTTCATGTTTGCAGAATCC GCTCGTCTACTAATACAACTGTATGGCTTCCTTTACAGATGTGTCACCGG CCATGACACGCCTTTCTTCTTCTGCTGCTCCCGGTTGTCCGCTGCCTGTT TGCACGCTGAAAACTCACCATTCGTTTCGCGACAAATCCCGTTATGTGTG GCGCTCCACCGCCGACGAAACCAAAACAACCAGGCAAGCGGGCGAACCGG AAGGCGCGCGTGGTGACATTCTCGCACACGCGCAACCATAAGGTGCAGGA GGTCAACCTTCAGGAGAAGCGCATCTTCTGGACTGAGGGAAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20217:237..1232-

>mRNA_P-wetherbeei_contig20217.1.1 ID=mRNA_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig20217:237..1232- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCGTTATCGCGGCCCTTGCGGCCTTATATCAGGCAGCAGCTTTCGT
CCTGCCGGCTTCCGCTTTCAACGGAGCTGCACTCGCATCACAGGTGGGAG
CTGCTATTTCGGCATCCCAGGCCTTGGAGATGCGGACAAGAATCTGCGAC
CTTACCGGCAAGCGGGCGAACCGGAAGGCGCGCGTGGTGACATTCTCGCA
CACGCGCAACCATAAGGTGCAGGAGGTCAACCTTCAGGAGAAGCGCATCT
TCTGGACTGAGGGAAAGTGA
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