prot_P-wetherbeei_contig20115.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig20115.1.1
Unique Nameprot_P-wetherbeei_contig20115.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length104
Homology
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BLAST of mRNA_P-wetherbeei_contig20115.1.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.810e-6
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 
Query:   27 YGFVIFALPLQATVAIEDMTGKEFKGRIVEVKAAVTANKPQRAQ 70
            YGFV F  PL AT+AIE + GKE KGR+VE+K A+T+ + +R Q
Sbjct:  139 YGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQ 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20115.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE3.810e-656.82RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 14..98
e-value: 6.0E-7
score: 31.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 26..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20115contigP-wetherbeei_contig20115:462..773 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20115.1.1mRNA_P-wetherbeei_contig20115.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig20115 335..873 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig20115.1.1 ID=prot_P-wetherbeei_contig20115.1.1|Name=mRNA_P-wetherbeei_contig20115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MACIPPFLPFPLSNHRSLCTSSPFGSYGFVIFALPLQATVAIEDMTGKEF
KGRIVEVKAAVTANKPQRAQKGRAAEGDEDAMDFISEGEKPAAQEGSAEA
AEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf