mRNA_P-wetherbeei_contig20088.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20088.1.1
Unique NamemRNA_P-wetherbeei_contig20088.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20088.1.1 vs. uniprot
Match: A0A7C2M5Y3_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M5Y3_9HYPH)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-12
Identity = 64/250 (25.60%), Postives = 106/250 (42.40%), Query Frame = 1 
Query:   25 SALLAATTCSIVNAIANDLPSSSRRNLSAYLP---PVPTVFRLSHMRLCLDRRTHGFAS----SLAGYYDRLHVLKCLAVNVANRAGWDREADLIEIADMAHPWRKLATEALATIEEFNGEQGVRAADCG-ERSDIVANLLARAGSGGSPCVDAFGKVRLPAWAERRGQNRSVRSLHAIFLTGEGFQGAAVMNVSEKGLGVLGLRDVSVGSQVSLLIKPGSSISGRIVWVNGARAGIELDETLPEDSPLL 750
            +AL  A   S +NA+A     +  R +++++P         R     + L  RT          L G   RL   +   + +      +R A L+  A     WR LA  A+  ++  + +   R      E + ++  LL  A  G  PC++A G + LP   +RR   R     +    T  G   A   +VS  G+G+  +  +++   V + ++ G  +SGR+VW+   RAGIE  E L    PL+
Sbjct:   43 AALRIAAVASALNALAAGAAPTRARAVASFVPHRSAAVAAMRQCQQEMGLSPRTVACIDLLYRELEGARRRLDAFQAELIQLGPAHAANRGAKLLAAA-----WRGLARVAIEAVDALDRDMRWRLTGLFLENTAVLTRLLRAAAEGRQPCLNARGDIFLPTLPQRRSSRRFALLQNCTVRTRGGPVAAFARDVSANGMGLEHVAGLTIRQPVEVELRSGRRLSGRVVWIERGRAGIEFHEPLAPSDPLI 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2M5Y3_9HYPH1.120e-1225.60PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20088contigP-wetherbeei_contig20088:51..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size750
Hectar predicted targeting categorysignal peptide
Exons1
Cds size750
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.3588762-CDS-P-wetherbeei_contig20088:50..8001683186190.3588762-CDS-P-wetherbeei_contig20088:50..800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20088 51..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20088.1.1prot_P-wetherbeei_contig20088.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20088 51..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20088.1.1

>prot_P-wetherbeei_contig20088.1.1 ID=prot_P-wetherbeei_contig20088.1.1|Name=mRNA_P-wetherbeei_contig20088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
AVFAEFLNSALLAATTCSIVNAIANDLPSSSRRNLSAYLPPVPTVFRLSH
MRLCLDRRTHGFASSLAGYYDRLHVLKCLAVNVANRAGWDREADLIEIAD
MAHPWRKLATEALATIEEFNGEQGVRAADCGERSDIVANLLARAGSGGSP
CVDAFGKVRLPAWAERRGQNRSVRSLHAIFLTGEGFQGAAVMNVSEKGLG
VLGLRDVSVGSQVSLLIKPGSSISGRIVWVNGARAGIELDETLPEDSPLL
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mRNA from alignment at P-wetherbeei_contig20088:51..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20088.1.1 ID=mRNA_P-wetherbeei_contig20088.1.1|Name=mRNA_P-wetherbeei_contig20088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig20088:51..800- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGTTCGCGGAATTCCTGAACTCCGCCCTTCTGGCCGCCACGACGTG
CAGCATCGTCAATGCAATCGCGAACGACTTGCCCTCGTCCAGCCGGCGCA
ACCTGTCAGCCTATTTGCCGCCAGTACCTACCGTGTTCCGGCTTTCCCAC
ATGCGCCTTTGCCTGGATCGGAGGACGCATGGTTTTGCTTCGAGCCTTGC
GGGCTACTACGATCGCCTTCATGTCCTCAAATGCCTTGCCGTCAATGTTG
CCAACCGCGCCGGTTGGGACCGGGAGGCGGACCTGATCGAAATCGCAGAC
ATGGCTCATCCGTGGCGCAAGCTGGCCACGGAAGCATTGGCGACGATCGA
GGAATTCAACGGGGAACAGGGTGTTCGCGCCGCAGATTGCGGCGAACGGA
GCGACATCGTGGCAAACCTGCTAGCGAGGGCCGGGTCGGGCGGTTCGCCT
TGCGTCGACGCGTTCGGGAAAGTCCGGCTTCCAGCATGGGCCGAGCGGCG
GGGACAGAATCGCTCAGTCCGCAGTCTTCACGCGATTTTTCTGACCGGCG
AAGGCTTCCAGGGCGCGGCGGTCATGAATGTCAGCGAAAAAGGCCTTGGC
GTTCTCGGGTTGCGCGACGTTTCGGTAGGATCACAGGTGAGCCTGCTCAT
CAAGCCCGGATCAAGCATTTCCGGGCGGATCGTCTGGGTCAACGGGGCTC
GAGCCGGAATAGAGCTCGATGAAACCCTCCCAGAGGATTCCCCGCTGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20088:51..800-

>mRNA_P-wetherbeei_contig20088.1.1 ID=mRNA_P-wetherbeei_contig20088.1.1|Name=mRNA_P-wetherbeei_contig20088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig20088:51..800- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGTTCGCGGAATTCCTGAACTCCGCCCTTCTGGCCGCCACGACGTG
CAGCATCGTCAATGCAATCGCGAACGACTTGCCCTCGTCCAGCCGGCGCA
ACCTGTCAGCCTATTTGCCGCCAGTACCTACCGTGTTCCGGCTTTCCCAC
ATGCGCCTTTGCCTGGATCGGAGGACGCATGGTTTTGCTTCGAGCCTTGC
GGGCTACTACGATCGCCTTCATGTCCTCAAATGCCTTGCCGTCAATGTTG
CCAACCGCGCCGGTTGGGACCGGGAGGCGGACCTGATCGAAATCGCAGAC
ATGGCTCATCCGTGGCGCAAGCTGGCCACGGAAGCATTGGCGACGATCGA
GGAATTCAACGGGGAACAGGGTGTTCGCGCCGCAGATTGCGGCGAACGGA
GCGACATCGTGGCAAACCTGCTAGCGAGGGCCGGGTCGGGCGGTTCGCCT
TGCGTCGACGCGTTCGGGAAAGTCCGGCTTCCAGCATGGGCCGAGCGGCG
GGGACAGAATCGCTCAGTCCGCAGTCTTCACGCGATTTTTCTGACCGGCG
AAGGCTTCCAGGGCGCGGCGGTCATGAATGTCAGCGAAAAAGGCCTTGGC
GTTCTCGGGTTGCGCGACGTTTCGGTAGGATCACAGGTGAGCCTGCTCAT
CAAGCCCGGATCAAGCATTTCCGGGCGGATCGTCTGGGTCAACGGGGCTC
GAGCCGGAATAGAGCTCGATGAAACCCTCCCAGAGGATTCCCCGCTGCTA
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