mRNA_P-wetherbeei_contig20000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20000.1.1
Unique NamemRNA_P-wetherbeei_contig20000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Match: A0A835YRW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.840e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 ENVNLKEVANQTGTAIVKASNGAVVKATGDLEGPEGPRAVATLYRILLDTGAVLDKEPLKRITISFSSFQYVMAVSSGLVFIVKKTP 261
            ENV+L +V NQ GTA++KAS GAVV+ATGDL   E    +ATLYRI+ DTG +L  +PLK IT+SF+S+ YV+A+  G+V+IVKK P
Sbjct:    2 ENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESS-VIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQP 87
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BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Match: A0A7S2S4A7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4A7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.500e-13
Identity = 30/73 (41.10%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   34 TGTAIVKASNGAVVKATGDLEGPEGPRAVATLYRILLDTGAVLDKEPLKRITISFSSFQYVMAVSSGLVFIVK 252
            TGTA ++AS+GAV+K +GDL   EG   + + Y +L  +G++L  EP++++T++F +  Y +AVS G+++I K
Sbjct:   22 TGTAALRASDGAVLKTSGDLASKEGQGLLPSFYAMLQASGSILKDEPMRKLTVNFETHSYAVAVSGGVIYIAK 94
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BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Match: A0A0L0FPG4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPG4_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 8.440e-10
Identity = 32/87 (36.78%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 ENVNLKEVANQTGTAIVKASNGAVVKATGDLEGPEGPRAVATLYRILLDTGAVLDKEPLKRITISFSSFQYVMAVSS--GLVFIVKK 255
            ++++L+ V +Q GT I+ +  G V+ ++GDL+   GP   +T+  IL DTG VLD  PLKR+ +++ +F+YV+ +    G +++VK+
Sbjct:    5 QSIDLQRVTDQVGTMII-SRGGDVLSSSGDLD---GPNIQSTMIGILHDTGCVLDGAPLKRVCLTYDTFEYVLTLGGERGDIYVVKR 87
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BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Match: A0A3M6VFC4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFC4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.430e-8
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   46 IVKASNGAVVKATGDLEGPEGPRAVATLYRILLDTGAVLD---KEPLKRITISFSSFQYVMAVSSGLVFIVKKT 258
            +V    G V+ ATG L G  G  A  T+Y +L DT +VLD   KE L+R+TI+F ++ YV+ + +  V+++K++
Sbjct:    4 LVLDIQGQVLSATGALRGNAGEIAAETIYSMLQDTSSVLDTSQKEELRRMTINFPTYDYVVTLDTEQVYVIKRS 77
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BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Match: A0A5D6YJ19_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ19_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-7
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   13 LKEVANQTGTAIVKASNGAVVKATGDLEGPEGPRAVATLYRILLDTGAVLD---KEPLKRITISFSSFQYVMAVSSGLVFIVKKT 258
            L  V  Q GT ++    G V+ ATG L G  G +A  +++ IL D  +VL+    E L+R+TISF S+ YV+AV+   +++VK++
Sbjct:  583 LTAVQGQVGTLVLDLE-GQVLSATGQLAGDAGEQAAESVFSILQDAASVLEGAKNEVLERVTISFPSYSYVVAVNGSEIYVVKRS 666
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YRW7_9STRA7.840e-2558.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S4A7_9STRA3.500e-1341.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0L0FPG4_9EUKA8.440e-1036.78Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A3M6VFC4_9STRA6.430e-839.19Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A5D6YJ19_9STRA1.310e-738.82Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20000contigP-wetherbeei_contig20000:65..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI54822
Model size267
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.65e-12
EggNOG OGs2F0Q1@1|root,2T1U9@2759|Eukaryota,3QIAS@4776|Peronosporales
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.2204435-CDS-P-wetherbeei_contig20000:64..3311683186188.2204435-CDS-P-wetherbeei_contig20000:64..331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20000 65..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20000.1.1prot_P-wetherbeei_contig20000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20000 65..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20000.1.1

>prot_P-wetherbeei_contig20000.1.1 ID=prot_P-wetherbeei_contig20000.1.1|Name=mRNA_P-wetherbeei_contig20000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
ENVNLKEVANQTGTAIVKASNGAVVKATGDLEGPEGPRAVATLYRILLDT
GAVLDKEPLKRITISFSSFQYVMAVSSGLVFIVKKTPT*
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mRNA from alignment at P-wetherbeei_contig20000:65..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20000.1.1 ID=mRNA_P-wetherbeei_contig20000.1.1|Name=mRNA_P-wetherbeei_contig20000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig20000:65..331+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAACGTGAACCTCAAAGAGGTGGCCAACCAGACTGGCACGGCAATCGT
GAAGGCCTCCAATGGCGCTGTGGTGAAGGCGACGGGAGATTTGGAGGGGC
CGGAGGGGCCGCGGGCCGTGGCGACGCTTTACCGTATTCTGCTGGATACG
GGCGCCGTGCTTGACAAGGAGCCGTTAAAGAGGATCACAATCAGCTTCAG
CAGCTTTCAGTATGTAATGGCCGTCTCATCTGGCTTGGTCTTCATAGTCA
AGAAGACGCCAACATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20000:65..331+

>mRNA_P-wetherbeei_contig20000.1.1 ID=mRNA_P-wetherbeei_contig20000.1.1|Name=mRNA_P-wetherbeei_contig20000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig20000:65..331+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAACGTGAACCTCAAAGAGGTGGCCAACCAGACTGGCACGGCAATCGT
GAAGGCCTCCAATGGCGCTGTGGTGAAGGCGACGGGAGATTTGGAGGGGC
CGGAGGGGCCGCGGGCCGTGGCGACGCTTTACCGTATTCTGCTGGATACG
GGCGCCGTGCTTGACAAGGAGCCGTTAAAGAGGATCACAATCAGCTTCAG
CAGCTTTCAGTATGTAATGGCCGTCTCATCTGGCTTGGTCTTCATAGTCA
AGAAGACGCCAACATAG
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