mRNA_P-wetherbeei_contig10739.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10739.1.1
Unique NamemRNA_P-wetherbeei_contig10739.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10739.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10739contigP-wetherbeei_contig10739:33..2179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1189
Hectar predicted targeting categorymitochondrion
Exons6
Cds size1188
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10739.1.1prot_P-wetherbeei_contig10739.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10739 33..2179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185882.6552217-CDS-P-wetherbeei_contig10739:32..1771683185882.6552217-CDS-P-wetherbeei_contig10739:32..177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 33..177 -
1683185882.664944-CDS-P-wetherbeei_contig10739:436..5581683185882.664944-CDS-P-wetherbeei_contig10739:436..558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 437..558 -
1683185882.6738167-CDS-P-wetherbeei_contig10739:617..7611683185882.6738167-CDS-P-wetherbeei_contig10739:617..761Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 618..761 -
1683185882.6827583-CDS-P-wetherbeei_contig10739:1007..12741683185882.6827583-CDS-P-wetherbeei_contig10739:1007..1274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 1008..1274 -
1683185882.6913416-CDS-P-wetherbeei_contig10739:1523..16701683185882.6913416-CDS-P-wetherbeei_contig10739:1523..1670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 1524..1670 -
1683185882.702212-CDS-P-wetherbeei_contig10739:1816..21791683185882.702212-CDS-P-wetherbeei_contig10739:1816..2179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10739 1817..2179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10739.1.1

>prot_P-wetherbeei_contig10739.1.1 ID=prot_P-wetherbeei_contig10739.1.1|Name=mRNA_P-wetherbeei_contig10739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=396bp
AACLRHGIVPPGGRAAALARSECPRTRSSCPGRRPESSGGSGRTPSRPAA
TARSGSSPPPPSPRGRRRGRRAAAAAASHSTGRQRCLPACSARTTTRRRR
KKRRKRKKKKMRRSQWLTMSLVAASARLLPRLLRPPRLKRRPRRPRRWRR
RLMKRRTAAVTIKPSWKKRRVAATAKPPPRARAPTRVPRARSRRQRPRWP
PLTQKVAKTAKRAAKARKKQQKTKRVKRRRRSVRTAPMAGRTTTRWPAPN
LPSAPRRPKPRRRGRPRRRAPARRSDRRPLLLMISTTPTSNLSAASGPAA
AAAAPAPLYAIGDAGAGEEYVTRDELSRTVAVLRLEFARQIESYTRAVYT
HAAFASRGLPGTATGMPGVGAVAASAPATLGMAGAVSVAETVAAAA
back to top

mRNA from alignment at P-wetherbeei_contig10739:33..2179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10739.1.1 ID=mRNA_P-wetherbeei_contig10739.1.1|Name=mRNA_P-wetherbeei_contig10739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2147bp|location=Sequence derived from alignment at P-wetherbeei_contig10739:33..2179- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCATGCCTGCGACACGGAATAGTGCCCCCGGGCGGCCGAGCCGCGGC
GCTCGCAAGGTCAGAGTGCCCAAGAACGAGGAGTTCGTGTCCTGGAAGGA
GGCCGGAGAGCTCCGGCGGAAGCGGACGGACCCCGAGCCGTCCCGCAGCG
ACAGCACGAAGCGGGTCAAGCCCGCCCCCGCCGTCGCCGCGCGGTCGTCG
TCGCGGAAGAAGAGCGGCCGCGGCGGCGGCAAGCCACAGCACTGGGCGGC
AAAGGTGCTTGCCGGCGTGCAGCGCTCGGACGACGACGCGGAGGAGGAGG
AAGAAGAGGAGGAAGAGGAAGAAGAAGAAAATGAGGAGAAGCCAGTGGTT
GACCATGAGCTTGGTGAGCCTGTCTGGGTGGAAGCGGTGGGCGGCGTCTG
CCAACCTTTGCACCTTTCCCTCCGCTATTTGGCGACCTGTTCTTTTTCGT
ATGTCTTCTAACATTCTCGTGCTGTGGCGAATGATGCTTTCCTCTCTGCT
CGGGACAAGGTCGCGGCAAGCGCAAGGCTTCTGCCGAGGCTGCTAAGGCC
GCCAAGGCTCAAAAGGCGGCCAAGAAGGCCAAGGCGGTGGCGGCGGCGAC
TGATGAAGAGGAGGACGGCAGCGGTGACGATAAAGCCGTCATGGAAGAAG
AGGAGGGTGAGGAAGGGGAGGCGAAGGAGAAGGGTGGCGGCATTCGCAGC
AGTGAGCGCAGAGCCTTTTTGGATTTGTGCTTCCACTGCATTGGATTCCG
CCGCTGTGCCGATGCCAAACATGTCCTTTCATTTTGGTCTCGCTCCCTCT
ATAACCCTTTAAGCGGTCAGTCGATCGCAACCTGAGCATTCACTTCGCGG
CCGCTATCGTTTGCCTCGCTCTTGCCGTTGCCGCTGCTGCCGCCTCGCTT
TGCAGGTGGCCGCGACGGCAAAGCCCCCGCCAAGGGCAAGGGCTCCGACA
AGGGTGCCAAGGGCAAGAAGCCGGCGGCAAAGACCGCGGTGGCCGCCGTT
GACACAGAAAGTGGCGAAGACGGCGAAGAGGGCGGCAAAGGCAAGAAAAA
AGCAACAGAAGACGAAGAGGGTGAAGAGGAGGAGGAGAAGTGTACGGACG
GCTCCGATGGCGGGGAGGACGACGACGCGGTGGCCGGCTCCAAATCTCCC
AAGCGCGCCGCGCCGGCCAAAGGTATGCATTGTCCATACGAATCAGTGTT
GTTGTAGTCCTTCTCGGAAAGAAGTTCCTGTGCAGCGGCGAGTTCCCCGG
TGGAAGGGCACCTCCTGAAGCGCGAGATCGAAAGAGAAAGGGGAAAAGTG
TCGTTCTTTTTACACATATAGTCAGCCAATCACGCCATCATTCCGACCGA
TTTCTCTTGCCTCGCTTCTGCCACAAACCAAAAACCAAAAACCGGCCCCC
GCTCCTGCACGACGCCAGCCACGGCGTCGGGGGCGGCCGCGGCGGCGGGC
ACCCGCAAGAAGAAGCGACCGGCGTCCCTTGCTGCTTATGATCTCGACGA
CGCCGACCTCGAATTTGAGCGCGGCGTCGGGCCCCGCGGCGGCCGCGGCG
GCGCCAGCGCCGGCGGCGTCGGCGCTGCCGCAGGCATTGGCAGCGCCATC
GGCATCGGCGTCGGTGGCCAGCTGTATGCCATCGGCGACGCGGGGGCGGG
AGAGGAGTACGTGACGCGGGACGAGCTGTCGCGGACGGTGGCAGTGCTGC
GGTTGGAGTTCGCCCGCCAGATCGAGTCTTATACGCGGGCCGTGTGGGTT
CTTTCGGTCTTTATCTCAGCTATCATGATGCCAAATTCTCTTTCTCCTTT
CCCATGACAATGTTGGTTCCTCATCTGAAAACACCTTGGAAGAGACCGTT
CTTGTTAATATGTTGCAGCGTACCATTATTTTGACTTCCTTTCGCTCTGT
TTGAGCTCGCAGCACGCCTTATGCTTTCTCGCTTGTCGAAGGCTCTGCCT
CAATTCATAGAACTAATCACTACACATCCCCGCTGCTACGCCCCTTCCGC
AGGTACACTCACGCCGCCTTCGCGTCGCGCGGCCTCCCGGGCACCGCCAC
GGGCATGCCGGGCGTGGGGGCGGTGGCCGCCAGTGCGCCGGCGACGCTTG
GCATGGCCGGCGCAGTCAGCGTGGCTGAGACGGTGGCAGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10739:33..2179-

>mRNA_P-wetherbeei_contig10739.1.1 ID=mRNA_P-wetherbeei_contig10739.1.1|Name=mRNA_P-wetherbeei_contig10739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig10739:33..2179- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCATGCCTGCGACACGGAATAGTGCCCCCGGGCGGCCGAGCCGCGGC
GCTCGCAAGGTCAGAGTGCCCAAGAACGAGGAGTTCGTGTCCTGGAAGGA
GGCCGGAGAGCTCCGGCGGAAGCGGACGGACCCCGAGCCGTCCCGCAGCG
ACAGCACGAAGCGGGTCAAGCCCGCCCCCGCCGTCGCCGCGCGGTCGTCG
TCGCGGAAGAAGAGCGGCCGCGGCGGCGGCAAGCCACAGCACTGGGCGGC
AAAGGTGCTTGCCGGCGTGCAGCGCTCGGACGACGACGCGGAGGAGGAGG
AAGAAGAGGAGGAAGAGGAAGAAGAAGAAAATGAGGAGAAGCCAGTGGTT
GACCATGAGCTTGGTCGCGGCAAGCGCAAGGCTTCTGCCGAGGCTGCTAA
GGCCGCCAAGGCTCAAAAGGCGGCCAAGAAGGCCAAGGCGGTGGCGGCGG
CGACTGATGAAGAGGAGGACGGCAGCGGTGACGATAAAGCCGTCATGGAA
GAAGAGGAGGGTGGCCGCGACGGCAAAGCCCCCGCCAAGGGCAAGGGCTC
CGACAAGGGTGCCAAGGGCAAGAAGCCGGCGGCAAAGACCGCGGTGGCCG
CCGTTGACACAGAAAGTGGCGAAGACGGCGAAGAGGGCGGCAAAGGCAAG
AAAAAAGCAACAGAAGACGAAGAGGGTGAAGAGGAGGAGGAGAAGTGTAC
GGACGGCTCCGATGGCGGGGAGGACGACGACGCGGTGGCCGGCTCCAAAT
CTCCCAAGCGCGCCGCGCCGGCCAAAGCCACGGCGTCGGGGGCGGCCGCG
GCGGCGGGCACCCGCAAGAAGAAGCGACCGGCGTCCCTTGCTGCTTATGA
TCTCGACGACGCCGACCTCGAATTTGAGCGCGGCGTCGGGCCCCGCGGCG
GCCGCGGCGGCGCCAGCGCCGCTGTATGCCATCGGCGACGCGGGGGCGGG
AGAGGAGTACGTGACGCGGGACGAGCTGTCGCGGACGGTGGCAGTGCTGC
GGTTGGAGTTCGCCCGCCAGATCGAGTCTTATACGCGGGCCGTGTACACT
CACGCCGCCTTCGCGTCGCGCGGCCTCCCGGGCACCGCCACGGGCATGCC
GGGCGTGGGGGCGGTGGCCGCCAGTGCGCCGGCGACGCTTGGCATGGCCG
GCGCAGTCAGCGTGGCTGAGACGGTGGCAGCGGCGGCG
back to top