prot_P-wetherbeei_contig19908.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19908.1.1
Unique Nameprot_P-wetherbeei_contig19908.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length94
Homology
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.220e-36
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 94
            VYS  LQW+   +Q   FP+G+RPVHEDILLAKLRPGQ I+ EAHC +GVGKDHAK+SPVATASYRLLP++ +  +V+G+ A +L A CPM V
Sbjct:  161 VYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNV 253          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.610e-34
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 92
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P V +   V GDDA+ LV +C M
Sbjct:  157 VYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQM 246          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 4.550e-34
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQ--DLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 94
            VYS D+ WV  G Q  + V  N ++PVH+DIL+AKLRPGQ I   A C KG+GKDHAK+SPVATA+YRLLPEVTI+GD+ GD A  LV KCPM V
Sbjct:  111 VYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNV 205          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.690e-33
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 94
            VYS   +W+  G Q   FP+G+RP+H+DILLAKLR GQ I  E HC KGVGKDHAKYSPVATASYRL P +T+   V G  ARELVA CPM V
Sbjct:  180 VYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNV 272          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 3.290e-33
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKC 90
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P+V ++  V G DA+ LV +C
Sbjct:  148 VYSRDLEWVPQGNQEERF-GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEEC 235          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.890e-33
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 94
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPVATASYRL+P + +   V G DAR+LVA KC + V
Sbjct:  154 VYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGV 246          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A482SEW1_9ARCH (RPOLD domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEW1_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 9.080e-33
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0
Query:   13 GNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 94
            G Q+ VFP GVRPVH+DI+LAKL PGQ I+ EAHC KGVGKDH K+SPVATASYRLLPE+T + +V  + A EL A CPM V
Sbjct:    3 GTQEEVFPEGVRPVHDDIVLAKLAPGQRIEFEAHCRKGVGKDHTKFSPVATASYRLLPEITFLQEVLDEQAEELRAMCPMGV 84          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 3.460e-32
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPM 92
            VYS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KG+GKDHAK+SPVATASYRL+P+V     V G DA+ LV  C M
Sbjct:  185 VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQM 274          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL)

HSP 1 Score: 121 bits (304), Expect = 2.170e-31
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVA-KCPMKV 94
            +YS DL+WV  GNQ+  F   +RPVHEDIL+AKLRPGQSI  EAHC KGVGKDHAK+SPV+TASYRLLP +     V G DA++LV  KC M V
Sbjct:  154 IYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVSTASYRLLPHIEFKQPVEGADAKKLVEEKCVMGV 246          
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.020e-31
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 0
Query:    2 VYSSDLQWVCSGNQDLVFPN--GVRPVHEDILLAKLRPGQSIQCEAHCNKGVGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV 94
            V+S  ++W   G+Q   F    G+RPVH+DIL+AKLRPGQ I  E HC KG+GKDHAK+SPVATASYRLLP VT+  +V G +A ELVAKCP+ V
Sbjct:  173 VFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNV 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19908.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RJI0_9STRA5.220e-3664.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662X4Y9_9STRA2.610e-3468.13DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6B2LAX2_9EUKA4.550e-3464.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A836C8K2_9STRA2.690e-3364.52DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT3.290e-3367.42DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA3.890e-3367.02DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A482SEW1_9ARCH9.080e-3368.29RPOLD domain-containing protein (Fragment) n=1 Tax... [more]
H3GV90_PHYRM3.460e-3265.93DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8K1FTD9_PYTOL2.170e-3164.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7FPF8_ECTSI4.020e-3161.05DNA-directed RNA polymerases I and III subunit RPA... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 2..59
e-value: 8.9E-15
score: 55.0
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 2..56
e-value: 8.2E-33
score: 115.9
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 1..60
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 57..94
e-value: 8.2E-33
score: 115.9
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 2..94
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 2..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19908contigP-wetherbeei_contig19908:219..804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19908.1.1mRNA_P-wetherbeei_contig19908.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19908 219..807 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19908.1.1 ID=prot_P-wetherbeei_contig19908.1.1|Name=mRNA_P-wetherbeei_contig19908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MVYSSDLQWVCSGNQDLVFPNGVRPVHEDILLAKLRPGQSIQCEAHCNKG
VGKDHAKYSPVATASYRLLPEVTIVGDVRGDDARELVAKCPMKV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR036603RBP11-like
IPR033901RNAPI/III_AC40