mRNA_P-wetherbeei_contig19904.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19904.2.1
Unique NamemRNA_P-wetherbeei_contig19904.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: E7RXX5_9BURK (SNARE-like domain protein n=3 Tax=Lautropia TaxID=47670 RepID=E7RXX5_9BURK)

HSP 1 Score: 226 bits (576), Expect = 1.170e-72
Identity = 109/157 (69.43%), Postives = 129/157 (82.17%), Query Frame = 1
Query:   16 TLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
             L+D  LHLD H+  +++NYG W YA++FAI+FIETG+VVMPFLPGDSLLFVAGA AA G   L  L+GLLA+AA+LG+  NY IGR +GPKVF WEDSRFFNR AFD+THAFYEKHG IT+IV RF+PF+RTF+PFVAGVA MT+ RF  FNI GG
Sbjct:    5 ALLDIFLHLDKHLEMVVQNYGVWVYALMFAIIFIETGLVVMPFLPGDSLLFVAGAIAAVGGLDLPLLMGLLAVAAVLGDAVNYSIGRYIGPKVFSWEDSRFFNREAFDRTHAFYEKHGGITIIVARFMPFIRTFAPFVAGVAQMTYARFAMFNIVGG 161          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A368L241_9BURK (DedA family protein n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L241_9BURK)

HSP 1 Score: 225 bits (574), Expect = 2.130e-72
Identity = 109/161 (67.70%), Postives = 135/161 (83.85%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITG 483
            M+I+L+LVDFILHLD H+  LI  YG W Y ILFAIVF+ETG+V+ PFLPGDSLLFVAGAFAARG+  L TL+ LL +AAI G+  NY IGRR+GP+VF+WE SR+FN+AAFDK HAFYE+HG  T+++ RF+PF+RTF+PFVAGVA M++ +F FFNITG
Sbjct:    1 MDIILSLVDFILHLDKHLDALIAQYGIWIYGILFAIVFLETGLVIFPFLPGDSLLFVAGAFAARGEMDLFTLMALLIIAAITGDALNYAIGRRVGPQVFRWEQSRWFNKAAFDKAHAFYERHGGKTIVIARFVPFIRTFAPFVAGVAQMSYRQFAFFNITG 161          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: UPI00198A508F (VTT domain-containing protein n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI00198A508F)

HSP 1 Score: 224 bits (570), Expect = 1.020e-71
Identity = 105/162 (64.81%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            MEI+ TL+DF+LH+D H+   + NYGAW YA+LFAI+F+ETGVVVMPFLPGDSLLFV GA    G  SL   IGLL  AA+LGN +NY IGR  GPKVF+WE+SRFFN+AAFD++HAFYE+HG IT++  RF+PF+RTF+PFVAGVA MT ++F  +++TGG
Sbjct:    1 MEIVATLIDFVLHVDRHLQLFVTNYGAWVYALLFAIIFVETGVVVMPFLPGDSLLFVVGAMCGLGLMSLPLSIGLLIAAAVLGNQTNYAIGRYFGPKVFRWENSRFFNKAAFDQSHAFYERHGGITIVAARFMPFLRTFAPFVAGVARMTRSKFTLYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: H5WR19_9BURK (Putative membrane-associated protein n=1 Tax=Burkholderiales bacterium JOSHI_001 TaxID=864051 RepID=H5WR19_9BURK)

HSP 1 Score: 221 bits (563), Expect = 1.030e-70
Identity = 102/162 (62.96%), Postives = 133/162 (82.10%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            M+I+ TL+DFILH+D H+ E ++NYG W YA+LF I+F+ETG+VVMPFLPGDSLLFVAGA A  G  S   L+ LL +AA+ GN +NY IGR +GPKVFQWEDS+FFN+ AF++ HAFYEK+G IT+++ RF+PF+RTF+PFVAGVA MT  +F F+++TGG
Sbjct:    1 MDIVATLIDFILHVDVHLKEFVQNYGNWVYALLFLIIFVETGLVVMPFLPGDSLLFVAGALAGTGAMSYPLLVLLLIVAAVAGNQTNYTIGRHIGPKVFQWEDSKFFNKKAFEQAHAFYEKYGGITIVLARFMPFLRTFAPFVAGVAQMTRRKFSFYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A520BRD7_9BURK (DedA family protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A520BRD7_9BURK)

HSP 1 Score: 221 bits (562), Expect = 1.470e-70
Identity = 106/162 (65.43%), Postives = 128/162 (79.01%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            M++L  L+DFILH+D H+A+ + NYGAW YA+LF I+F+ETGVVVMPFLPGDSLLFV GA    G   L   +GLL  AAILGN  NY IGR  GP+VF+WEDSRFFN+AAFDK HAFYEK+G  TLI  RF+PF+RTF+PFVAGVA MT  +F F+++TGG
Sbjct:    1 MDLLPFLIDFILHVDRHLADFVANYGAWVYALLFLIIFVETGVVVMPFLPGDSLLFVVGAMCGVGLMDLWLSMGLLTAAAILGNQCNYSIGRHFGPRVFKWEDSRFFNKAAFDKAHAFYEKYGGFTLIAARFMPFLRTFAPFVAGVALMTRRKFTFYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A519HXW6_9BURK (DedA family protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519HXW6_9BURK)

HSP 1 Score: 220 bits (561), Expect = 2.080e-70
Identity = 104/162 (64.20%), Postives = 128/162 (79.01%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            M++L  L+DFILH+D H+A  ++ YGAW YA+LF I+F+ETGVVVMPFLPGDSLLFV GA    G   +   +GLL  AAILGN SNY IGR  GP+VFQWEDSRFFN+AAFDK HAFYEK+G  T++  RF+PF+RTF+PFVAGVA MT  +F F+++TGG
Sbjct:    1 MDLLHFLIDFILHVDQHLATFVQAYGAWVYALLFLIIFVETGVVVMPFLPGDSLLFVVGAMCGVGLMDVGVSMGLLTAAAILGNQSNYAIGRHFGPRVFQWEDSRFFNKAAFDKAHAFYEKYGGFTIVAARFMPFLRTFAPFVAGVAQMTRRKFTFYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A2S5T2K4_9BURK (DedA family protein n=1 Tax=Schlegelella thermodepolymerans TaxID=215580 RepID=A0A2S5T2K4_9BURK)

HSP 1 Score: 219 bits (559), Expect = 4.190e-70
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            ME++L LVDFILH+D H+AE ++ YG W YA+LFA+VF+ETG+VVMPFLPGDSLLFV G     G   L   IGLL  AAILG+  NY +GR  GPKVF+WE SRFFN+AAFD+ HAFYE++G IT+++ RF+PF+RTF+PFVAGVA MT T+F F+N+ GG
Sbjct:    1 MELVLFLVDFILHVDRHLAEFVQQYGTWVYALLFAVVFVETGLVVMPFLPGDSLLFVVGTMCGAGHMDLPLSIGLLLAAAILGDQLNYSVGRYFGPKVFRWEQSRFFNKAAFDQAHAFYERYGGITIVLARFMPFIRTFAPFVAGVAEMTRTKFTFYNVMGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A4Q7VA89_9BURK (Membrane-associated protein n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VA89_9BURK)

HSP 1 Score: 219 bits (559), Expect = 4.330e-70
Identity = 105/162 (64.81%), Postives = 129/162 (79.63%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            M+I+  L+DFILH+D H+A  ++NYGAW YA+LF I+F+ETGVVVMPFLPGDSLLFV GA    G  +L   IGLL  AAILGN +NY IGR +GPKVF WE SRFFN+ AFD  HAFYEK+G IT+++ RF+PF+RTF+PFVAGVA MT  RF F+++TGG
Sbjct:    1 MDIVAFLIDFILHVDVHLATFVQNYGAWVYALLFTIIFVETGVVVMPFLPGDSLLFVVGALCGVGLMNLPLSIGLLTAAAILGNQTNYTIGRMVGPKVFGWEQSRFFNKRAFDSAHAFYEKYGGITIVLARFMPFLRTFAPFVAGVAEMTRRRFTFYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A4Y7B7G9_9BURK (DedA family protein n=1 Tax=Ramlibacter sp. WS9 TaxID=1882741 RepID=A0A4Y7B7G9_9BURK)

HSP 1 Score: 219 bits (557), Expect = 7.900e-70
Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            ME+L   +DFILH+D H+   + NYG W YA+LF I+F+ETGVVVMPFLPGDSLLFV GA    G  S    +GLL  AAILGN SNY IGR  GPKVFQWEDSRFFN+ AFD+ HAFYEK+G IT++  RF+PF+RTF+PFVAGVA MT ++F F+++TGG
Sbjct:    1 MELLAFAIDFILHVDKHLETFVTNYGNWVYALLFLIIFVETGVVVMPFLPGDSLLFVVGAMCGVGLMSYPVAVGLLLAAAILGNQSNYTIGRYFGPKVFQWEDSRFFNKKAFDQAHAFYEKYGGITIVAARFMPFLRTFAPFVAGVAQMTRSKFSFYDVTGG 162          
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Match: A0A0Q7RW44_9BURK (Uncharacterized protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q7RW44_9BURK)

HSP 1 Score: 218 bits (556), Expect = 1.200e-69
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = 1
Query:    1 MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLPGDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQWEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMTHTRFQFFNITGG 486
            M++L  L+DFILH+D H+A+ +  YGAW YA+LF I+F+ETGVVVMPFLPGDSLLFV GA    G   L   +GLL  AAILGN  NY IGR  GP+VFQWE+SRFFN+AAF+K HAFYEK+G  TLI  RF+PF+RTF+PFVAGVA MT  +F FF++TGG
Sbjct:    1 MDLLQFLIDFILHVDRHLADFVTAYGAWVYALLFLIIFVETGVVVMPFLPGDSLLFVVGAMCGVGLMDLGLSMGLLTAAAILGNQCNYAIGRHFGPRVFQWENSRFFNKAAFEKAHAFYEKYGGFTLIAARFMPFLRTFAPFVAGVAQMTRRKFTFFDVTGG 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19904.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E7RXX5_9BURK1.170e-7269.43SNARE-like domain protein n=3 Tax=Lautropia TaxID=... [more]
A0A368L241_9BURK2.130e-7267.70DedA family protein n=1 Tax=Parvibium lacunae TaxI... [more]
UPI00198A508F1.020e-7164.81VTT domain-containing protein n=1 Tax=Ramlibacter ... [more]
H5WR19_9BURK1.030e-7062.96Putative membrane-associated protein n=1 Tax=Burkh... [more]
A0A520BRD7_9BURK1.470e-7065.43DedA family protein n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A519HXW6_9BURK2.080e-7064.20DedA family protein n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A2S5T2K4_9BURK4.190e-7063.58DedA family protein n=1 Tax=Schlegelella thermodep... [more]
A0A4Q7VA89_9BURK4.330e-7064.81Membrane-associated protein n=1 Tax=Rivibacter sub... [more]
A0A4Y7B7G9_9BURK7.900e-7064.20DedA family protein n=1 Tax=Ramlibacter sp. WS9 Ta... [more]
A0A0Q7RW44_9BURK1.200e-6964.81Uncharacterized protein n=2 Tax=Burkholderiales Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19904contigP-wetherbeei_contig19904:770..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog887898.HMPREF0551_1546
Preferred namededA
PFAMsSNARE_assoc
Model size486
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03975
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-73
EggNOG OGsCOG0586@1|root,COG0586@2|Bacteria,1MX4M@1224|Proteobacteria,2VJCP@28216|Betaproteobacteria,1K18A@119060|Burkholderiaceae
DescriptionPfam SNARE associated Golgi protein
Cds size486
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.767977-CDS-P-wetherbeei_contig19904:769..12551683186184.767977-CDS-P-wetherbeei_contig19904:769..1255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19904 770..1255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19904.2.1prot_P-wetherbeei_contig19904.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19904 770..1255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19904.2.1

>prot_P-wetherbeei_contig19904.2.1 ID=prot_P-wetherbeei_contig19904.2.1|Name=mRNA_P-wetherbeei_contig19904.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MEILLTLVDFILHLDHHIAELIENYGAWTYAILFAIVFIETGVVVMPFLP
GDSLLFVAGAFAARGQFSLATLIGLLALAAILGNTSNYWIGRRLGPKVFQ
WEDSRFFNRAAFDKTHAFYEKHGAITLIVTRFLPFMRTFSPFVAGVAAMT
HTRFQFFNITGG
back to top

mRNA from alignment at P-wetherbeei_contig19904:770..1255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19904.2.1 ID=mRNA_P-wetherbeei_contig19904.2.1|Name=mRNA_P-wetherbeei_contig19904.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig19904:770..1255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATCCTGCTGACCCTCGTCGATTTCATCCTGCATCTCGACCACCA TATCGCCGAATTGATCGAAAACTATGGCGCCTGGACCTACGCCATCTTGT TCGCCATCGTGTTCATCGAGACCGGTGTGGTGGTGATGCCCTTTCTACCC GGCGACTCGTTGCTGTTCGTGGCCGGCGCATTTGCGGCACGCGGGCAGTT CAGCCTTGCGACCTTGATCGGGCTGTTGGCGCTGGCGGCGATTCTTGGCA ATACCAGTAACTACTGGATAGGACGCCGACTCGGACCGAAAGTCTTTCAA TGGGAGGACTCGCGCTTTTTCAACCGCGCGGCGTTCGACAAGACGCACGC CTTCTACGAGAAGCACGGCGCCATCACCCTCATAGTGACGCGCTTCCTGC CCTTCATGCGCACCTTCTCACCCTTCGTGGCCGGTGTCGCGGCGATGACC CACACGCGTTTTCAGTTCTTCAATATCACCGGTGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19904:770..1255+

>mRNA_P-wetherbeei_contig19904.2.1 ID=mRNA_P-wetherbeei_contig19904.2.1|Name=mRNA_P-wetherbeei_contig19904.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig19904:770..1255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATCCTGCTGACCCTCGTCGATTTCATCCTGCATCTCGACCACCA
TATCGCCGAATTGATCGAAAACTATGGCGCCTGGACCTACGCCATCTTGT
TCGCCATCGTGTTCATCGAGACCGGTGTGGTGGTGATGCCCTTTCTACCC
GGCGACTCGTTGCTGTTCGTGGCCGGCGCATTTGCGGCACGCGGGCAGTT
CAGCCTTGCGACCTTGATCGGGCTGTTGGCGCTGGCGGCGATTCTTGGCA
ATACCAGTAACTACTGGATAGGACGCCGACTCGGACCGAAAGTCTTTCAA
TGGGAGGACTCGCGCTTTTTCAACCGCGCGGCGTTCGACAAGACGCACGC
CTTCTACGAGAAGCACGGCGCCATCACCCTCATAGTGACGCGCTTCCTGC
CCTTCATGCGCACCTTCTCACCCTTCGTGGCCGGTGTCGCGGCGATGACC
CACACGCGTTTTCAGTTCTTCAATATCACCGGTGGG
back to top