prot_P-wetherbeei_contig19861.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig19861.1.1
Unique Name	prot_P-wetherbeei_contig19861.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	226

Homology

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI000362E26F (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000362E26F)

HSP 1 Score: 311 bits (798), Expect = 1.660e-105
Identity = 157/204 (76.96%), Postives = 181/204 (88.73%), Query Frame = 0

Query:   22 PAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            PA L +G VLQ V T +ILFQAG+ER  YRVERGAICHYMLW+DGRHDVIEFAFPGDIIGLGHL+  VSTAQAMVDTVVS+VS+E F+SALE+DDRLSFRLA+AVEREF+HLRD+ L+    PAAA+VANFLLA+SS+NGPEGRD  LISD+ITAGFVA+KLD+SI+KLGAALL LKK+GAV+ET  GLRI++  TLQKLADAA
Sbjct:    3 PASLASGSVLQNVETSEILFQAGEERALYRVERGAICHYMLWADGRHDVIEFAFPGDIIGLGHLRHHVSTAQAMVDTVVSLVSEEEFASALETDDRLSFRLAAAVEREFDHLRDRALSAEEQPAAARVANFLLAISSLNGPEGRDRTLISDDITAGFVAEKLDLSIEKLGAALLSLKKQGAVKETPAGLRILNTETLQKLADAA 206

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI001558C24F (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI001558C24F)

HSP 1 Score: 301 bits (772), Expect = 1.100e-101
Identity = 155/197 (78.68%), Postives = 172/197 (87.31%), Query Frame = 0

Query:   30 VLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLA-PNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            +LQ V TG  LFQ GD RT YR+E GA+CHYMLWSDGRHDVIEFAFPGDI+GLGHL   VSTAQAMVDTVVS+VSDE F SA + DDRLSFRLASAVEREFEHLRDK+L+ P HVPAAA+VANFLLALS+MN PEGRDP  ISD+ITAGFVA++L+MSI+KLGAALL LKKEGAVRET  GLRI+D  TLQK+ADAA
Sbjct:    1 MLQNVATGATLFQPGDRRTLYRIESGALCHYMLWSDGRHDVIEFAFPGDIVGLGHLSYHVSTAQAMVDTVVSLVSDEEFESASDRDDRLSFRLASAVEREFEHLRDKSLSGPGHVPAAARVANFLLALSAMNTPEGRDPREISDDITAGFVAEQLNMSIEKLGAALLLLKKEGAVRETPSGLRIIDTATLQKVADAA 197

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: V5SHW7_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SHW7_9HYPH)

HSP 1 Score: 267 bits (683), Expect = 9.880e-88
Identity = 141/225 (62.67%), Postives = 170/225 (75.56%), Query Frame = 0

Query:    1 MAIVCRPETFEHTSEENGKPLPAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            MA +CR E F        K  P  L +G VLQ+V TG ILFQAGDERT YRVERGAICHY+LW+DGRH+VIEFAFPGDIIGLGHL    +T QAMVDTVVSVVS++    AL+ DDRLSFR+ +AVEREF++LR++T+    +   A+VAN LLALS +N  EGR+  LISD++TAGFVA++LDMSI+ L AALL LK +GAVR+T  GL IVD   L +LADAA
Sbjct:    1 MATMCRSEEFMDVRGGFEKLNPGALHSGNVLQSVATGAILFQAGDERTLYRVERGAICHYVLWADGRHEVIEFAFPGDIIGLGHLDIHSTTGQAMVDTVVSVVSEDELKDALDHDDRLSFRMTAAVEREFDYLREQTVRQASITPTARVANLLLALSGLNVSEGRNGTLISDDLTAGFVAERLDMSIENLSAALLNLKIQGAVRDTPRGLEIVDMPILHRLADAA 225

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KL13_9HYPH (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KL13_9HYPH)

HSP 1 Score: 207 bits (528), Expect = 3.240e-64
Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 0

Query:   22 PAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAP-NHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            PAP  A V  + +  G+ LF AGD+R  YRVERGA+CHY+ W DG H+VIEFAFPGDIIGLGHL    STAQA+  T+VS VS+E F   LE+D +L+ R  +A +REF+ LR + LA    +PAA +VA+FL ALS M   EGRDP  I+DE ++G VAD L+M++D L AAL  L+  G V     GLRI D   L++ ADAA
Sbjct:   23 PAPKSARV--RRMGRGETLFHAGDQRRLYRVERGALCHYLRWDDGHHEVIEFAFPGDIIGLGHLDVHTSTAQAVAKTIVSPVSEEEFEQLLETDGQLAARFTAAADREFDFLRARALATAGKLPAAGRVASFLAALSRMGASEGRDPAFITDEFSSGAVADHLNMTVDALAAALRDLEARGIVTPVRNGLRIADLEALERFADAA 225

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI0009307BCC (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009307BCC)

HSP 1 Score: 186 bits (472), Expect = 9.860e-56
Identity = 96/190 (50.53%), Postives = 131/190 (68.95%), Query Frame = 0

Query:   37 GDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            G+ LF  GD+RT  YRVERGA+CHY+ W DGR ++IEFAFPGDIIG GHL   ++TAQA+  T+VS VS+EAF   LE+D +L+ R A A +REF+++R + +A        +VA++L AL+ ++  EGR  ELISD  ++G VAD+LD+S+D L  AL  L++ G V     GLRI D   L++ ADAA
Sbjct:   37 GEALFSRGDQRTQLYRVERGALCHYLRWDDGRREIIEFAFPGDIIGFGHLGEHITTAQAVAKTIVSPVSEEAFEQLLETDAQLAARYAVAADREFDYVRARAVAAGRGKPVKRVASYLAALARISANEGRTRELISDGYSSGAVADQLDISLDALADALRDLEQRGIVAPDDDGLRIADLDALEQFADAA 226

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I0E873_HYPSQ (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E873_HYPSQ)

HSP 1 Score: 184 bits (468), Expect = 6.240e-55
Identity = 94/188 (50.00%), Postives = 125/188 (66.49%), Query Frame = 0

Query:   37 GDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLAD 223
            G+ LF +GD+R   YRVERGA+CHY+ W+DG H+VIEFAFPGDIIG GHL    STAQA+  T+VS +S++ F   L  D +L+ R A+A +REF++LR + LA +    A +VA+FL ALS M   EGRDP +I DE ++G VA+ L+M++D L   L  L+  G V     GLRI D   L+  AD
Sbjct:   52 GETLFHSGDKRDQLYRVERGALCHYLRWADGHHEVIEFAFPGDIIGFGHLDVHTSTAQAVAKTIVSPISEDEFEQLLAGDGQLAARYAAAADREFDYLRVRALAGSRSAPAKRVASFLAALSRMGASEGRDPSIIRDEFSSGAVAEHLNMTVDALAGVLRELEARGMVTSVREGLRITDIEALETFAD 239

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A109BAP5_HYPSL (Transcriptional regulator, Crp/Fnr family n=3 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BAP5_HYPSL)

HSP 1 Score: 173 bits (438), Expect = 3.070e-51
Identity = 90/175 (51.43%), Postives = 116/175 (66.29%), Query Frame = 0

Query:   50 YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADA 224
            YRVERGA+CHY+ W+DGRHDVIEFAFPGDIIG GH+   +STAQA   T+VS +    F   +  D +L+ R ASAV+REFE +R + +       A +VA+FL ALS M   EGRD  LI DE+++G VAD+L M+I  L   L  LK  G + E+  GLRI+D   L++ ADA
Sbjct:    3 YRVERGALCHYIRWADGRHDVIEFAFPGDIIGFGHMDTHISTAQAAARTIVSHIDPAEFEQLMADDAQLAGRYASAVDREFEFMRLRAVQSTQDAPARRVASFLAALSYMGVREGRDANLIPDEVSSGAVADQLGMNIASLARVLSDLKTRGMISESPQGLRILDLDALEQFADA 177

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KH20_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KH20_9HYPH)

HSP 1 Score: 159 bits (403), Expect = 2.640e-45
Identity = 88/197 (44.67%), Postives = 120/197 (60.91%), Query Frame = 0

Query:   30 VLQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            + + +  G++LF+ GD RTH YRVE+G+IC + + SDG HDV+EFAFPGDIIGLG+L   VS AQA V+T V  V   A    LE   R++ RL +A+ERE   LR+            ++A   + LS  N  EGRDP LISD +T G VA  L++S+D+L   L  L++   V  T  GLR+     L++LADA+
Sbjct:   25 IYRRLAAGEMLFREGDARTHVYRVEQGSICLFKVRSDGSHDVLEFAFPGDIIGLGYLDHHVSAAQAAVETQVGCVPRAAVQLVLEKTPRITSRLTAAIEREVAFLRESQSQAGRTSPVERIAALFVTLSRCNAYEGRDPTLISDSLTCGVVAGYLNVSVDELADCLKELERRDLVEATPKGLRLKSFDELEQLADAS 221

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I0EQH5_HYPSQ (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EQH5_HYPSQ)

HSP 1 Score: 146 bits (368), Expect = 4.770e-40
Identity = 82/200 (41.00%), Postives = 122/200 (61.00%), Query Frame = 0

Query:   26 DAGVVLQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADA 224
            DAG   + +  G+ LF+ GD+R+H YRVE+G+IC +    DG  DVIEFAFPGD++GLG+L   VS+AQA ++T +S +   A    L+       RL++A+ERE   L++  +      A  ++A  L+ L+  N  EGRDP +I+D ++ G VA  L+MSID+L  AL  L+    V  ++ GLR+ +   L+ LADA
Sbjct:   22 DAG--YRRLVAGEFLFREGDQRSHVYRVEKGSICLFKERLDGSRDVIEFAFPGDLVGLGYLDSHVSSAQATMETALSCLPHSALEPVLDKSPGSKSRLSAAIEREVAFLKEAQVHTGQSKALERIAALLVTLARCNAYEGRDPAIIADSLSCGVVAGYLNMSIDELAGALKELESRDLVEASTKGLRLKNLDMLEHLADA 219

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BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KD98_9HYPH (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KD98_9HYPH)

HSP 1 Score: 147 bits (371), Expect = 1.720e-39
Identity = 80/196 (40.82%), Postives = 121/196 (61.73%), Query Frame = 0

Query:   31 LQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 225
            L+ +   + LFQ  D+    YRVERG++CHY    DG  ++IEF FPGDIIG  HL   +STA+A +++ VSV+  + F  AL++D  L+ R+A+  +REF++ R   +  +     A+VA++L A+SS N  EGRD  LI ++ ++  VAD L MS D L  +L  L++   ++ T+ GL IVD   LQ  ++AA
Sbjct:   26 LRLLGPSECLFQEDDKLAQPYRVERGSLCHYTRRDDGSPEIIEFVFPGDIIGFVHLGTHISTARATMESAVSVLPAKEFEMALKADAHLATRVAAMADREFDYRRAHVILSSDDRPVARVASYLAAISSANAHEGRDARLIMEDTSSPAVADALQMSRDTLAVSLAELERRSLIQRTATGLLIVDADALQAFSEAA 221

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI000362E26F	1.660e-105	76.96	Crp/Fnr family transcriptional regulator n=1 Tax=H...	[more]
UPI001558C24F	1.100e-101	78.68	Crp/Fnr family transcriptional regulator n=1 Tax=H...	[more]
V5SHW7_9HYPH	9.880e-88	62.67	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A6I3KL13_9HYPH	3.240e-64	53.66	Cyclic nucleotide-binding domain-containing protei...	[more]
UPI0009307BCC	9.860e-56	50.53	Crp/Fnr family transcriptional regulator n=1 Tax=H...	[more]
A0A6I0E873_HYPSQ	6.240e-55	50.00	Crp/Fnr family transcriptional regulator n=1 Tax=H...	[more]
A0A109BAP5_HYPSL	3.070e-51	51.43	Transcriptional regulator, Crp/Fnr family n=3 Tax=...	[more]
A0A6I3KH20_9HYPH	2.640e-45	44.67	Cyclic nucleotide-binding domain-containing protei...	[more]
A0A6I0EQH5_HYPSQ	4.770e-40	41.00	Crp/Fnr family transcriptional regulator n=1 Tax=H...	[more]
A0A6I3KD98_9HYPH	1.720e-39	40.82	Cyclic nucleotide-binding domain-containing protei...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 32..139 e-value: 1.4E-15 score: 59.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 145..224 e-value: 6.4E-7 score: 31.1
IPR000595	Cyclic nucleotide-binding domain	PFAM	PF00027	cNMP_binding	coord: 33..115 e-value: 1.9E-9 score: 37.5
IPR000595	Cyclic nucleotide-binding domain	CDD	cd00038	CAP_ED	coord: 25..123 e-value: 2.95441E-7 score: 45.7798
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 25..136
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 145..223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig19861	contig	P-wetherbeei_contig19861:189..866 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig19861.1.1	mRNA_P-wetherbeei_contig19861.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig19861 189..866 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig19861.1.1 ID=prot_P-wetherbeei_contig19861.1.1|Name=mRNA_P-wetherbeei_contig19861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MAIVCRPETFEHTSEENGKPLPAPLDAGVVLQTVNTGDILFQAGDERTHY
RVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVV
SVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVA
NFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKE
GAVRETSGGLRIVDPHTLQKLADAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014710	RmlC-like_jellyroll
IPR036388	WH-like_DNA-bd_sf
IPR000595	cNMP-bd_dom
IPR018490	cNMP-bd-like
IPR036390	WH_DNA-bd_sf