mRNA_P-wetherbeei_contig19845.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19845.1.1
Unique NamemRNA_P-wetherbeei_contig19845.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: D8LC06_ECTSI (Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC06_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.090e-45
Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKV-DPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            Q+A  +RP LE +   L+S L H+ G EIEDNKFS+SVHYR+V  P  VEE+H IVH+YV   P++ +K GKKVLELRP V W+KGSAV WIL+AL L  R DVFP+YLGDDITDEDAF  +E  A G
Sbjct:  130 QMAEDMRPMLEATTDTLHSLLGHIQGYEIEDNKFSLSVHYRQVPSPPHVEELHNIVHEYVATAPEIVVKAGKKVLELRPKVDWHKGSAVNWILDALDLGNRSDVFPIYLGDDITDEDAFVAMETRACG 257          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A7S2D2V7_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2V7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.860e-39
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLA-HVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIEN 390
            QVA+  RP L+R+       +A  + G EIEDNKF++SVHYR V P  + EVHA V+ Y+     + L+HGK VLE+RP V WNKGSAV+WIL+ALGLD+ +DVFPLYLGDD+TDEDAF  + +
Sbjct:  189 QVADGFRPLLKRAVEDFEETIAKRIQGAEIEDNKFALSVHYRNVSPELIPEVHAAVNAYIADESSLELRHGKMVLEVRPKVSWNKGSAVVWILKALGLDQSEDVFPLYLGDDMTDEDAFLALRS 312          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A7S2WT46_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT46_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.330e-38
Identity = 71/118 (60.17%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAF 375
            QV +  RP LE     L  +L+ + G ++EDNKF++SVHYR V    VE V  IV   V   PD+ALKHGKKVLELRP V WNKGSAVLWI+  LGLD  +D+FP YLGDDITDEDAF
Sbjct:  206 QVGDQFRPLLEDVRQQLEDQLSAIPGTKVEDNKFALSVHYRNVPDQYVELVFEIVSALVERQPDLALKHGKKVLELRPKVDWNKGSAVLWIMRQLGLDTAEDIFPFYLGDDITDEDAF 323          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A662WPT2_9STRA (Trehalose 6-phosphate phosphatase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPT2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.750e-33
Identity = 65/127 (51.18%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            QVA+  RPTLE++   L  + AH+ G E+EDN  ++S+HYR VDPT    V  IV DYV   P +  K GK V ELRP V W+KG AV++IL  LGLD  +DV P YLGDD++DEDAF  +     G
Sbjct:  103 QVADHYRPTLEQALRDLTEQTAHIRGAELEDNGLAISIHYRHVDPTLQGAVEQIVDDYVSFHPSLTKKLGKMVFELRPRVDWDKGRAVMFILAELGLD-AEDVVPFYLGDDVSDEDAFNALNGRGLG 228          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: K3WM19_GLOUD (Trehalose 6-phosphate phosphatase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM19_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 1.470e-31
Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            QV + +RP LE     L+ +LA + G EIEDN+ ++SVHYR V P     V  IV DYV   P +A KHGKKV ELRP V WNKG AVL+IL  LGLD  + V P YLGDD++DEDAF  +     G
Sbjct:  104 QVGDHLRPALEDCIRDLSVKLAEIPGAEIEDNRLAVSVHYRHVAPALQSVVEGIVDDYVVHHPSLAKKHGKKVFELRPQVDWNKGRAVLFILSQLGLD-AEHVVPFYLGDDVSDEDAFNALNARGNG 229          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A7I8LL71_SPIIN (Trehalose 6-phosphate phosphatase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LL71_SPIIN)

HSP 1 Score: 124 bits (310), Expect = 2.800e-31
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            Q A+   P +E    +L    + + G ++E+NKF +SVHYR VD T    +  +VHD ++  P + L +G+KVLE+RP + WNKG AV ++LE+LGLD  DDV P+Y+GDD TDEDAF+V+ +  RG
Sbjct:  221 QPASEFIPMIEEVFRSLVESASEIPGSKVENNKFCVSVHYRNVDETNWAAIAQLVHDTLKQYPRLRLTYGRKVLEIRPVIDWNKGKAVEFLLESLGLDNSDDVLPIYIGDDRTDEDAFEVLRSSGRG 347          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A2P4Y0S3_9STRA (Trehalose 6-phosphate phosphatase n=18 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y0S3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.450e-31
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            QVA+  RP LE++   L  + AH+ G E+EDN  ++SVHYR VD      V  IV DYV   P +  K GK V E+RP V W+KG AV++IL  LGLD  +DV P YLGDD++DEDAF  +     G
Sbjct:   94 QVADHFRPKLEQALRDLTEQTAHIAGAELEDNGLAISVHYRHVDSALQNAVEQIVDDYVAYHPSLTKKMGKMVFEVRPRVDWDKGRAVMYILSELGLD-AEDVVPFYLGDDVSDEDAFNALNGRGLG 219          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A8K1CGA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGA6_PYTOL)

HSP 1 Score: 121 bits (303), Expect = 9.240e-31
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG 402
            QV +  RP LE+    L++ +AH+ G E+EDN  ++SVHYR V      EV  IV DY+   P +  KHGKKV ELRP V W+KG AV++IL  LGLD  ++V P YLGDD++DEDAF  + + + G
Sbjct:  138 QVGDHFRPMLEQCVRDLSAAIAHIPGAEMEDNHLAVSVHYRHVAMEFQAEVEDIVDDYIIQHPSLVKKHGKKVFELRPRVDWDKGRAVMYILSELGLD-AENVVPFYLGDDVSDEDAFSALNSRSIG 263          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A6A2Y215_HIBSY (Trehalose 6-phosphate phosphatase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y215_HIBSY)

HSP 1 Score: 120 bits (302), Expect = 9.270e-31
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVI 384
            Q A+ + PT+E   ++L      + G ++E+NKF +SVHYR VD    + V   VHD +R  P + L HG+KVLE+RP + W+KG AV ++LE+LGL   DDV P+Y+GDD TDEDAF+V+
Sbjct:  138 QPASKLLPTIEEVYNSLVKSTKEIKGAKVENNKFCVSVHYRNVDEKNWKTVAQCVHDVIRNYPRLRLSHGRKVLEVRPVIDWDKGKAVTFLLESLGLSDCDDVLPIYVGDDRTDEDAFKVL 258          
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Match: A0A5P1E2N4_ASPOF (Trehalose 6-phosphate phosphatase n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E2N4_ASPOF)

HSP 1 Score: 122 bits (305), Expect = 1.300e-30
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   22 QVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKVDPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILEALGLDKRDDVFPLYLGDDITDEDAFQVI 384
            Q A+   P ++    +L      + G  +E+NKF +SVHYR VD      +  IVHD ++G P + L HG+KVLE+RP + WNKG AV ++LE+LGL+ RDDV P+Y+GDDITDEDAF+V+
Sbjct:  214 QPASEFLPMIDEVFRSLVENTNDIEGATVENNKFCVSVHYRLVDEELWPMIAEIVHDILKGYPKLKLTHGRKVLEIRPVIDWNKGKAVEFLLESLGLNNRDDVLPIYVGDDITDEDAFKVL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC06_ECTSI4.090e-4561.72Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarp... [more]
A0A7S2D2V7_9STRA5.860e-3956.45Trehalose 6-phosphate phosphatase n=1 Tax=Dictyoch... [more]
A0A7S2WT46_9STRA6.330e-3860.17Trehalose 6-phosphate phosphatase n=1 Tax=Rhizochr... [more]
A0A662WPT2_9STRA9.750e-3351.18Trehalose 6-phosphate phosphatase n=2 Tax=Nothophy... [more]
K3WM19_GLOUD1.470e-3152.76Trehalose 6-phosphate phosphatase n=1 Tax=Globispo... [more]
A0A7I8LL71_SPIIN2.800e-3146.46Trehalose 6-phosphate phosphatase n=1 Tax=Spirodel... [more]
A0A2P4Y0S3_9STRA6.450e-3148.82Trehalose 6-phosphate phosphatase n=18 Tax=Phytoph... [more]
A0A8K1CGA6_PYTOL9.240e-3148.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A2Y215_HIBSY9.270e-3147.93Trehalose 6-phosphate phosphatase n=1 Tax=Hibiscus... [more]
A0A5P1E2N4_ASPOF1.300e-3048.76Trehalose 6-phosphate phosphatase n=1 Tax=Asparagu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19845contigP-wetherbeei_contig19845:147..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T006011
PFAMsETC_C1_NDUFA4,Trehalose_PPase
Model size402
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.42e-32
EggNOG OGsCOG1877@1|root,KOG3389@1|root,KOG1050@2759|Eukaryota,KOG3389@2759|Eukaryota,1MCCD@121069|Pythiales
DescriptionNADH dehydrogenase ubiquinone iron-sulfur protein 4. Source PGD
Cds size402
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.05784-CDS-P-wetherbeei_contig19845:146..2931683186183.05784-CDS-P-wetherbeei_contig19845:146..293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19845 147..293 +
1683186183.0664134-CDS-P-wetherbeei_contig19845:521..6111683186183.0664134-CDS-P-wetherbeei_contig19845:521..611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19845 522..611 +
1683186183.074089-CDS-P-wetherbeei_contig19845:814..9791683186183.074089-CDS-P-wetherbeei_contig19845:814..979Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19845 815..979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19845.1.1prot_P-wetherbeei_contig19845.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19845 147..979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19845.1.1

>prot_P-wetherbeei_contig19845.1.1 ID=prot_P-wetherbeei_contig19845.1.1|Name=mRNA_P-wetherbeei_contig19845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MLCRRAKQVANSIRPTLERSASALNSRLAHVGGCEIEDNKFSMSVHYRKV
DPTRVEEVHAIVHDYVRGCPDVALKHGKKVLELRPNVPWNKGSAVLWILE
ALGLDKRDDVFPLYLGDDITDEDAFQVIENEARG
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mRNA from alignment at P-wetherbeei_contig19845:147..979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19845.1.1 ID=mRNA_P-wetherbeei_contig19845.1.1|Name=mRNA_P-wetherbeei_contig19845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=833bp|location=Sequence derived from alignment at P-wetherbeei_contig19845:147..979+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTGTCGGCGTGCAAAGCAGGTGGCAAACTCGATCCGGCCCACGCT GGAGCGATCGGCGTCGGCTTTGAACTCGCGGCTGGCGCACGTCGGCGGCT GCGAGATCGAGGACAACAAGTTCTCCATGTCCGTTCACTACCGCAAGGTA CCCATTATTCATTACCAATAACAGATATATTCTATACCTCGGGTTACACG CGGGTTTTTGTCTGTTCGTAGTTGGGCGGCGGATGGACTCCGAGGAGCGC TTGATCTTGTTGAATCTGGCGTTTCTCCCTTTCTCAACCTGCTCGTTGGC ATTTCGACGTCACTCTGCCGTGCTTCCGAATCAAAAAATGGGCGCCGCTT GAACGAACACTGCCCCGCTGTGCAGGTGGACCCGACGCGCGTGGAGGAGG TGCACGCCATCGTCCACGACTACGTTCGCGGCTGCCCCGACGTCGCCCTC AAGCACGGCAAGAAGGTGCGCTGATGGATTCACTGGGAGGCGCTGTGACG CTTGTGGCTTCTGTGTCTCATCGTCACATTTTGCTGTTTCCTGTTCGTCT TTCTTCTGCTTAATCGCTTCTCTACGAACAACTGTTTTCTGTTTCTTTGT CCTCTTCTAATCTGTTTTCCCCGCCTCTGCCTCTTTCCTTCCTCCTACTT ATCCACCGCGACTAACAGGTACTGGAGCTGCGGCCGAACGTGCCGTGGAA CAAGGGATCGGCGGTGCTATGGATCCTCGAAGCGCTGGGGCTTGACAAGC GCGACGACGTTTTCCCTCTCTACCTCGGCGATGACATCACCGACGAGGAC GCTTTCCAGGTCATAGAGAATGAGGCGCGGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19845:147..979+

>mRNA_P-wetherbeei_contig19845.1.1 ID=mRNA_P-wetherbeei_contig19845.1.1|Name=mRNA_P-wetherbeei_contig19845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig19845:147..979+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTGTCGGCGTGCAAAGCAGGTGGCAAACTCGATCCGGCCCACGCT
GGAGCGATCGGCGTCGGCTTTGAACTCGCGGCTGGCGCACGTCGGCGGCT
GCGAGATCGAGGACAACAAGTTCTCCATGTCCGTTCACTACCGCAAGGTG
GACCCGACGCGCGTGGAGGAGGTGCACGCCATCGTCCACGACTACGTTCG
CGGCTGCCCCGACGTCGCCCTCAAGCACGGCAAGAAGGTACTGGAGCTGC
GGCCGAACGTGCCGTGGAACAAGGGATCGGCGGTGCTATGGATCCTCGAA
GCGCTGGGGCTTGACAAGCGCGACGACGTTTTCCCTCTCTACCTCGGCGA
TGACATCACCGACGAGGACGCTTTCCAGGTCATAGAGAATGAGGCGCGGG
GA
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