mRNA_P-wetherbeei_contig19736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19736.1.1
Unique NamemRNA_P-wetherbeei_contig19736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19736contigP-wetherbeei_contig19736:28..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI2G31610.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size303
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.18e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Descriptiongag-polypeptide of LTR copia-type
Cds size300
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.2809756-CDS-P-wetherbeei_contig19736:29..3291683186180.2809756-CDS-P-wetherbeei_contig19736:29..329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19736 30..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19736.1.1prot_P-wetherbeei_contig19736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19736 30..329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19736.1.1

>prot_P-wetherbeei_contig19736.1.1 ID=prot_P-wetherbeei_contig19736.1.1|Name=mRNA_P-wetherbeei_contig19736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
SCGDSSGGGSGSSKNSSAPATPLSSRIGSADLDMWHSRTHWPDGALQDLA
RRGLISLKPSTSNNRRHCSACAVANSRRLPTPKMTRRVETAPLELVYVDL
back to top

mRNA from alignment at P-wetherbeei_contig19736:28..329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19736.1.1 ID=mRNA_P-wetherbeei_contig19736.1.1|Name=mRNA_P-wetherbeei_contig19736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=302bp|location=Sequence derived from alignment at P-wetherbeei_contig19736:28..329- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGTGGCGACAGCAGCGGTGGCGGCAGTGGCAGCAGCAAGAACAGCAG
TGCGCCGGCGACACCGCTTTCGAGCCGCATCGGCTCGGCAGATCTGGACA
TGTGGCACAGCCGTACGCACTGGCCGGACGGCGCGCTGCAGGACCTGGCA
CGGCGCGGCTTAATCAGCCTTAAGCCCTCCACCTCGAACAACCGCCGCCA
CTGCAGCGCCTGCGCCGTTGCCAACAGCCGGCGCCTGCCTACGCCGAAGA
TGACGCGGCGAGTCGAGACGGCACCGCTTGAGCTGGTCTACGTCGATCTA
TC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19736:28..329-

>mRNA_P-wetherbeei_contig19736.1.1 ID=mRNA_P-wetherbeei_contig19736.1.1|Name=mRNA_P-wetherbeei_contig19736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig19736:28..329- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGTGGCGACAGCAGCGGTGGCGGCAGTGGCAGCAGCAAGAACAGCAG
TGCGCCGGCGACACCGCTTTCGAGCCGCATCGGCTCGGCAGATCTGGACA
TGTGGCACAGCCGTACGCACTGGCCGGACGGCGCGCTGCAGGACCTGGCA
CGGCGCGGCTTAATCAGCCTTAAGCCCTCCACCTCGAACAACCGCCGCCA
CTGCAGCGCCTGCGCCGTTGCCAACAGCCGGCGCCTGCCTACGCCGAAGA
TGACGCGGCGAGTCGAGACGGCACCGCTTGAGCTGGTCTACGTCGATCTA
back to top