mRNA_P-wetherbeei_contig19700.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19700.1.1
Unique NamemRNA_P-wetherbeei_contig19700.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19700.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19700contigP-wetherbeei_contig19700:193..1266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1074
Hectar predicted targeting categoryother localisation
Exons1
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.5355031-CDS-P-wetherbeei_contig19700:192..9811683186179.5355031-CDS-P-wetherbeei_contig19700:192..981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19700 193..981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.5454037-UTR-P-wetherbeei_contig19700:981..12661683186179.5454037-UTR-P-wetherbeei_contig19700:981..1266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19700 982..1266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19700.1.1prot_P-wetherbeei_contig19700.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19700 193..981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19700.1.1

>prot_P-wetherbeei_contig19700.1.1 ID=prot_P-wetherbeei_contig19700.1.1|Name=mRNA_P-wetherbeei_contig19700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MQSRPSAHAPAAKFASPPLRLPPDLLLAAMRWLPTASRLRAAAADVAFRD
AAYGSLAADDRLDVSTDHLTDNVLLWLVGRATAHVAVAAPAAATAAANED
GCACTAPPPIRALAVRSRRVTDAAVRGIVVAHGAALTELSLRGCSAVAEP
VTALAVAAHCRRLEVLDLSGCGRRAPTLSLLTTAGTSRSQLERLVQAPDF
QSYSLTDDVVSAAVMASAASLRVLRLAGCLAVTDLTAARAVAACPRLAEL
DLGAGARDGASGA
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mRNA from alignment at P-wetherbeei_contig19700:193..1266-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19700.1.1 ID=mRNA_P-wetherbeei_contig19700.1.1|Name=mRNA_P-wetherbeei_contig19700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig19700:193..1266- (Phaeothamnion wetherbeei SAG_119_79)
AGTTGGGGAAAAGAAAAAAAGAGGAGGATGTGGGAGTGCATAGGTTTCTT
GACCCATCCGTCGTCGTCCACATCTTTCTAGCTTTGTTCCTCTACGCTTT
TGAGGCAACATCGAAGGCTCTCCAAATCCTTTTTCGTAGTGGAAAAGAGG
AGAAACGATTCCATACAACAGTTGACCCATCCCTCGTTCTGAACTCGCTC
TGAATCCAGCGGCGACCTTCTTTCAATTCGTTGGAAAGGATAGATTACAT
CGGGCGGAAGAGGAGAGCAAGGAGAGAAAGGACAGATGCAATCAAGGCCA
TCAGCGCATGCTCCAGCAGCAAAATTTGCGTCGCCGCCATTGCGGTTGCC
GCCTGATTTGCTGCTTGCGGCGATGCGCTGGCTACCGACGGCATCGCGCC
TCCGCGCGGCGGCAGCGGATGTGGCGTTTCGCGATGCTGCCTATGGTTCG
CTGGCGGCGGACGACCGCCTCGACGTTTCGACCGACCATCTGACCGACAA
TGTCCTCCTCTGGCTGGTCGGACGCGCCACCGCCCACGTCGCCGTCGCTG
CCCCGGCTGCCGCCACCGCTGCCGCAAACGAAGACGGCTGTGCCTGCACG
GCTCCTCCCCCGATCCGCGCGCTCGCCGTGCGCAGCCGGCGCGTGACCGA
CGCCGCAGTCCGCGGTATCGTGGTTGCCCACGGCGCTGCGCTCACCGAGT
TGAGCCTTCGCGGCTGCTCGGCCGTCGCCGAGCCGGTGACGGCACTCGCC
GTCGCCGCACATTGCCGGCGTCTGGAGGTCCTGGACTTGTCCGGCTGCGG
GCGCCGGGCGCCAACGCTGTCGCTGCTGACGACGGCCGGCACCAGCCGCT
CGCAGCTGGAGCGTCTCGTGCAGGCACCGGATTTTCAGAGCTATTCGTTA
ACGGACGACGTTGTGAGCGCCGCCGTAATGGCCAGCGCCGCGTCGCTGCG
TGTGCTGCGGCTCGCCGGGTGCCTTGCCGTCACGGACTTAACCGCTGCGC
GCGCCGTCGCCGCCTGCCCGCGCCTCGCCGAACTGGACCTTGGGGCTGGC
GCTCGCGACGGGGCCAGCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19700:193..1266-

>mRNA_P-wetherbeei_contig19700.1.1 ID=mRNA_P-wetherbeei_contig19700.1.1|Name=mRNA_P-wetherbeei_contig19700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig19700:193..1266- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCAAGGCCATCAGCGCATGCTCCAGCAGCAAAATTTGCGTCGCC
GCCATTGCGGTTGCCGCCTGATTTGCTGCTTGCGGCGATGCGCTGGCTAC
CGACGGCATCGCGCCTCCGCGCGGCGGCAGCGGATGTGGCGTTTCGCGAT
GCTGCCTATGGTTCGCTGGCGGCGGACGACCGCCTCGACGTTTCGACCGA
CCATCTGACCGACAATGTCCTCCTCTGGCTGGTCGGACGCGCCACCGCCC
ACGTCGCCGTCGCTGCCCCGGCTGCCGCCACCGCTGCCGCAAACGAAGAC
GGCTGTGCCTGCACGGCTCCTCCCCCGATCCGCGCGCTCGCCGTGCGCAG
CCGGCGCGTGACCGACGCCGCAGTCCGCGGTATCGTGGTTGCCCACGGCG
CTGCGCTCACCGAGTTGAGCCTTCGCGGCTGCTCGGCCGTCGCCGAGCCG
GTGACGGCACTCGCCGTCGCCGCACATTGCCGGCGTCTGGAGGTCCTGGA
CTTGTCCGGCTGCGGGCGCCGGGCGCCAACGCTGTCGCTGCTGACGACGG
CCGGCACCAGCCGCTCGCAGCTGGAGCGTCTCGTGCAGGCACCGGATTTT
CAGAGCTATTCGTTAACGGACGACGTTGTGAGCGCCGCCGTAATGGCCAG
CGCCGCGTCGCTGCGTGTGCTGCGGCTCGCCGGGTGCCTTGCCGTCACGG
ACTTAACCGCTGCGCGCGCCGTCGCCGCCTGCCCGCGCCTCGCCGAACTG
GACCTTGGGGCTGGCGCTCGCGACGGGGCCAGCGGCGCC
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