mRNA_P-wetherbeei_contig19632.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19632.1.1
Unique NamemRNA_P-wetherbeei_contig19632.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A7F5RBM8_AGRPL (CDK-activating kinase assembly factor MAT1 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5RBM8_AGRPL)

HSP 1 Score: 62.4 bits (150), Expect = 2.840e-9
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEE 261
            R FNK  EDFA  ++Y+DYLE  E II+NL  DID+ N N  + EYK N++ +I +++++   +E  + E +E +R++EE
Sbjct:   79 RDFNKKEEDFASVREYNDYLEDVETIIFNLTHDIDIVNTNKKIDEYKKNNKEQIMKSKSKMSRDEYELEEMIEFERQQEE 158          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A1Y1I1R8_KLENI (Repair factor TFIIH and CDK-activating kinase assembly factor n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1R8_KLENI)

HSP 1 Score: 60.5 bits (145), Expect = 4.480e-9
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 RVSSRIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQR 249
            R+ S I+NK REDF E K+Y+DYLE  EDI++NLV  IDV    A VA Y+  +Q +I  + AR   E+AA   +L+AQR
Sbjct:   10 RIQS-IYNKEREDFQELKEYNDYLETIEDIVFNLVEGIDVTATEASVARYQEENQEQILSSHARKASEKAA---NLKAQR 85          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: UPI0006231B5F (CDK-activating kinase assembly factor MAT1 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006231B5F)

HSP 1 Score: 61.2 bits (147), Expect = 7.660e-9
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEETDRL 273
            R FNK  EDFA  ++Y+DYLE+ E IIYNL  +IDV   N  + +YK +++ +IA+++++    E  + E +E +R+KEE  R+
Sbjct:   80 RDFNKREEDFATLREYNDYLEEIETIIYNLANNIDVVETNKRIEQYKRDNKEQIAKSKSKLGRSEYELEEMIELERQKEEERRI 163          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: UPI00084091C2 (CDK-activating kinase assembly factor MAT1 n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI00084091C2)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEETDRLYGSLEEQRAQR 306
            R FNK  EDFA  ++Y+DYLE+ E IIYNL  +IDV   N  + +YK +++ +I +++++    E  + E +E +R+KEE  +L  + EE  A+R
Sbjct:   80 RDFNKKEEDFATLREYNDYLEEVETIIYNLANNIDVIETNKKIEQYKKDNKDQITKSKSKLGRSEYELEEMIELERQKEEERKLELAKEEVEAKR 174          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: C1N136_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N136_MICPC)

HSP 1 Score: 60.1 bits (144), Expect = 1.160e-8
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   10 RVSSRIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIA 228
            R+ S I+NK + DF   KDY+DYLE +EDII+NL+  +DV    A V  Y+  H SEIAR Q R  +E+  +A
Sbjct:   16 RIKS-IYNKRQVDFTALKDYNDYLEAQEDIIFNLIEGVDVKETEARVDAYRREHASEIARLQKRNEEEDRRLA 87          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A8K0DA84_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DA84_9COLE)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-8
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKE 258
            R FNK  EDFA  ++Y+DYLE  E IIYNLV +ID+ N N  + +YK N++ +I +++ +   EE  + E L+ ++++E
Sbjct:   80 RDFNKKEEDFATVREYNDYLEDIETIIYNLVNNIDIVNTNKKIEDYKRNNREQILKSKGKLSREEYELEELLDLEKQQE 158          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A8H3EGW5_9LECA (RNA polymerase II transcription factor B subunit 3 n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3EGW5_9LECA)

HSP 1 Score: 60.5 bits (145), Expect = 1.580e-8
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   10 RVSSRIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQR 249
            R  + +FN+ +E+F   +DY++YLE+ E +I+NL+   DV+     +A Y A+H+S I+RN+A AH+E   I    EAQR
Sbjct:   95 RRVNAVFNRRQEEFETLRDYNNYLEEVEILIFNLINKTDVEETEKKIAAYAADHRSTISRNKALAHEESINITAEAEAQR 174          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A2P2PJC2_RHIMU (Uncharacterized protein MANES_14G112900 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2PJC2_RHIMU)

HSP 1 Score: 58.9 bits (141), Expect = 1.750e-8
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   10 RVSSRIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAA 222
            R+SS IFNK  EDF   ++Y+DYLE+ ED+I+NLV  +DV  + A +AEY+ ++  +I  NQAR  +E AA
Sbjct:   18 RISS-IFNKREEDFPSLREYNDYLEEVEDMIFNLVNGVDVPAIEAKIAEYQKDNAEQIMINQARKAEELAA 87          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: A0A3P4NGK2_GULGU (RING-type domain-containing protein n=9 Tax=Boreoeutheria TaxID=1437010 RepID=A0A3P4NGK2_GULGU)

HSP 1 Score: 59.7 bits (143), Expect = 1.900e-8
Identity = 33/94 (35.11%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEETDRLYGSLEEQRAQ 303
            +I+NK  EDF   ++Y+D+LE+ E+I++NL  ++D+DN    +  Y+  ++  I +N+ +   E+  + E+LE +R++ E  RL+   EEQR Q
Sbjct:   80 KIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEMYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQRQQ 173          
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Match: UPI00062541BE (CDK-activating kinase assembly factor MAT1 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI00062541BE)

HSP 1 Score: 60.1 bits (144), Expect = 1.920e-8
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   22 RIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALVAEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEETDRL 273
            R FNK  EDFA  ++Y+DYLE+ E+II+NL  +ID+   N  + +YK +++ +I +N++R   +E  + + LE +R +EE  RL
Sbjct:   80 RDFNKKEEDFATLREYNDYLEEIENIIFNLANNIDIIETNKRIEQYKRDNKEQIMKNKSRIGRKECELEQLLELERLQEEEKRL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19632.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7F5RBM8_AGRPL2.840e-942.50CDK-activating kinase assembly factor MAT1 n=1 Tax... [more]
A0A1Y1I1R8_KLENI4.480e-950.00Repair factor TFIIH and CDK-activating kinase asse... [more]
UPI0006231B5F7.660e-941.67CDK-activating kinase assembly factor MAT1 n=1 Tax... [more]
UPI00084091C21.050e-840.00CDK-activating kinase assembly factor MAT1 n=1 Tax... [more]
C1N136_MICPC1.160e-847.95Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A8K0DA84_9COLE1.400e-841.77Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8H3EGW5_9LECA1.580e-841.25RNA polymerase II transcription factor B subunit 3... [more]
A0A2P2PJC2_RHIMU1.750e-849.30Uncharacterized protein MANES_14G112900 n=1 Tax=Rh... [more]
A0A3P4NGK2_GULGU1.900e-835.11RING-type domain-containing protein n=9 Tax=Boreoe... [more]
UPI00062541BE1.920e-840.48CDK-activating kinase assembly factor MAT1 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19632contigP-wetherbeei_contig19632:102..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog12957.ACEP25198-PA
Preferred nameMNAT1
PFAMsMAT1,zf-C3HC4_5
Model size306
Max annot lvl33208|Metazoa
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000082,GO:0000278,GO:0000428,GO:0001932,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007512,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0016043,GO:0016070,GO:0016071,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0021591,GO:0022402,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036260,GO:0042127,GO:0042221,GO:0042325,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045859,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0046914,GO:0047485,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048660,GO:0048661,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051252,GO:0051254,GO:0051338,GO:0051592,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060322,GO:0060548,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0072359,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1990234,GO:2000112,GO:2001141
Exons2
Evalue3.23e-09
EggNOG OGsCOG5220@1|root,KOG3800@2759|Eukaryota,38CBI@33154|Opisthokonta,3BDRT@33208|Metazoa,3CRG2@33213|Bilateria,41UAC@6656|Arthropoda,3SJUT@50557|Insecta,46FS3@7399|Hymenoptera
DescriptionCDK-activating kinase assembly factor MAT1
Cds size306
COG categoryO
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.7594151-CDS-P-wetherbeei_contig19632:101..2601683186177.7594151-CDS-P-wetherbeei_contig19632:101..260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19632 102..260 -
1683186177.7711213-CDS-P-wetherbeei_contig19632:606..7531683186177.7711213-CDS-P-wetherbeei_contig19632:606..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19632 607..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19632.1.1prot_P-wetherbeei_contig19632.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19632 102..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19632.1.1

>prot_P-wetherbeei_contig19632.1.1 ID=prot_P-wetherbeei_contig19632.1.1|Name=mRNA_P-wetherbeei_contig19632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
AVCRVSSRIFNKTREDFAEAKDYDDYLEKREDIIYNLVRDIDVDNMNALV
AEYKANHQSEIARNQARAHDEEAAIAESLEAQRKKEETDRLYGSLEEQRA
QR
back to top

mRNA from alignment at P-wetherbeei_contig19632:102..753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19632.1.1 ID=mRNA_P-wetherbeei_contig19632.1.1|Name=mRNA_P-wetherbeei_contig19632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=652bp|location=Sequence derived from alignment at P-wetherbeei_contig19632:102..753- (Phaeothamnion wetherbeei SAG_119_79)
GCTGTATGTCGTGTGTCCAGCAGAATATTCAACAAGACGCGCGAGGACTT TGCGGAGGCGAAGGACTATGACGACTACCTCGAGAAGCGGGAGGACATCA TCTACAACCTCGTGCGCGACATCGACGTCGACAATATGAATGCCCTGGTG AGTTTTGAGCGGCACGGCTAGCCCAGGCATGGCAGAGTGCGCCTTGCGTT GCCGCAGCCCTCTCGGAGGGTTTGAACTACTGCTAGTGTTCTTTCCAGTA TCAGATTATTATTTCTACAGCAATGCACCAAATCGCTGCTCCTAGATCTT GCAGACTGACAGTGTTCTTTATTCCCACCCCTTTCTCGACCATGCCGCCT CTGACATGTGTCGTGGCGGAGGCCGCCATGCCGCCGTGGTTTGCGGCGGC GGCTTGCGGTGGCGGCGGCGGCTTGTGGCGGCGGTCAAACCGCGGCGGCT TTTGCATCGTTTGGCACTGGCGGCGAACGATTGCAACCACCAGGTGGCAG AGTACAAGGCGAACCACCAATCAGAGATCGCCCGAAACCAGGCGCGCGCC CATGACGAGGAGGCGGCCATTGCCGAGTCGCTGGAGGCGCAGCGCAAGAA GGAGGAGACGGACCGCCTCTACGGCTCGCTCGAGGAGCAGCGGGCACAGC GG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19632:102..753-

>mRNA_P-wetherbeei_contig19632.1.1 ID=mRNA_P-wetherbeei_contig19632.1.1|Name=mRNA_P-wetherbeei_contig19632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig19632:102..753- (Phaeothamnion wetherbeei SAG_119_79)
GCTGTATGTCGTGTGTCCAGCAGAATATTCAACAAGACGCGCGAGGACTT
TGCGGAGGCGAAGGACTATGACGACTACCTCGAGAAGCGGGAGGACATCA
TCTACAACCTCGTGCGCGACATCGACGTCGACAATATGAATGCCCTGGTG
GCAGAGTACAAGGCGAACCACCAATCAGAGATCGCCCGAAACCAGGCGCG
CGCCCATGACGAGGAGGCGGCCATTGCCGAGTCGCTGGAGGCGCAGCGCA
AGAAGGAGGAGACGGACCGCCTCTACGGCTCGCTCGAGGAGCAGCGGGCA
CAGCGG
back to top