mRNA_P-wetherbeei_contig107.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig107.2.1
Unique NamemRNA_P-wetherbeei_contig107.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: UPI0016034196 (beta-alanine-activating enzyme-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016034196)

HSP 1 Score: 60.8 bits (146), Expect = 5.660e-9
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   43 CVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRVRG 216
            CV  A+T G + +L+L SG+ L + +L GEVFSSPV  +N +V+GCR+DFVY ++V G
Sbjct:  941 CVAVASTKGTLYILTLDSGSCLASLRLPGEVFSSPVVWNNLLVVGCRDDFVYGIKVMG 998          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A8K0A0M6_BRALA (AASDH protein n=3 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A0M6_BRALA)

HSP 1 Score: 58.5 bits (140), Expect = 3.710e-8
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   43 CVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            CV  A+T G++ +L+L SG+ L + +L GEVFSSPV   N +V+GCRND VY ++V
Sbjct: 1122 CVAVASTKGMLYILTLDSGSCLTSLRLPGEVFSSPVVWGNLLVVGCRNDLVYGVKV 1177          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A2B4RXM3_STYPI (Acyl-CoA synthetase family member 4 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RXM3_STYPI)

HSP 1 Score: 56.6 bits (135), Expect = 1.580e-7
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   16 CDDCGRSIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            CD C   +A V A +  G + +L   SG +L    L GE+FSSPV VDN ++IGCR+D++Y L +
Sbjct:  263 CDKCDTQLA-VFALSIVGTLYILDFYSGVLLALHSLPGEIFSSPVVVDNQILIGCRDDYLYSLEI 326          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A0B6YV06_9EUPU (PQQ_3 domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YV06_9EUPU)

HSP 1 Score: 56.6 bits (135), Expect = 1.740e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   46 VVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            VV A+T G + +L+   G +L   +L GEVFSSPV VDN V +GCR++FVY L V
Sbjct:  654 VVTASTAGTIYMLNFQDGKLLSELKLPGEVFSSPVVVDNFVAVGCRDNFVYCLEV 708          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: D8LQF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   16 CDDCGRSIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRVRGLC 222
            C+ C      V+A +  GL++ LSLA G VL   QL GE+FSS V    +VV+GCR++ VYVL +   C
Sbjct: 1116 CEGCALLCPLVLACSVPGLISALSLADGEVLGEIQLPGEIFSSAVVAGPSVVVGCRDNRVYVLDILMTC 1184          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: G1T2T7_RABIT (Aminoadipate-semialdehyde dehydrogenase n=3 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1T2T7_RABIT)

HSP 1 Score: 55.8 bits (133), Expect = 3.300e-7
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   34 SIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRVRG 216
            S A + AA+T G + +L  ASG +    +L GEVFSSPV  ++ +VIGCRND+VY L +RG
Sbjct: 1028 SAALLAAASTDGKLWILDSASGQLQDVYELPGEVFSSPVVWESMLVIGCRNDYVYCLDLRG 1088          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: UPI0009E2835D (acyl-CoA synthetase family member 4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2835D)

HSP 1 Score: 55.1 bits (131), Expect = 6.180e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   61 TGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            T G + VL L SG  L +  L GEVFSSPV VDN ++IGCRND++Y L +
Sbjct: 1198 TLGTLYVLDLYSGVYLASYSLPGEVFSSPVVVDNRLLIGCRNDYMYSLEI 1247          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A3B5AM09_9TELE (Aminoadipate-semialdehyde dehydrogenase n=2 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5AM09_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 8.430e-7
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   28 GRSIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            GR+ A V  A+T G V +L   +G +L +  L GE+FSSPVA + ++VIGCRND+VY L++
Sbjct: 1059 GRTGALVGLASTDGTVWILDGQNGQMLASLALPGELFSSPVAWEQSLVIGCRNDYVYCLKL 1119          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A6S7H7P2_PARCT (Acyl- synthetase family member 4 isoform X1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H7P2_PARCT)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-6
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   10 FRCDDCGRSIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRV 210
            F     G +  C+V   T G + +L+ ++G +L    L GEVFSSP+ V + +V+GCRND++Y +++
Sbjct:  841 FTSQTFGSNSVCIVVVTTKGTMYLLAASNGKILKTFSLPGEVFSSPIIVGSDIVLGCRNDYLYCVKL 907          
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Match: A0A6P5AVT1_BRABE (acyl-CoA synthetase family member 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AVT1_BRABE)

HSP 1 Score: 53.5 bits (127), Expect = 2.150e-6
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   43 CVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPVAVDNAVVIGCRNDFVYVLRVR 213
            CV  A+T G + +L+L SG+ L    L GEVFSSPV   + +V+GCR+D VY ++VR
Sbjct: 1074 CVAVASTKGTLYILTLDSGSCLSTLTLPGEVFSSPVVWGDLLVVGCRDDLVYGVKVR 1130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig107.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00160341965.660e-951.72beta-alanine-activating enzyme-like n=1 Tax=Branch... [more]
A0A8K0A0M6_BRALA3.710e-851.79AASDH protein n=3 Tax=Branchiostoma lanceolatum Ta... [more]
A0A2B4RXM3_STYPI1.580e-744.62Acyl-CoA synthetase family member 4 n=1 Tax=Stylop... [more]
A0A0B6YV06_9EUPU1.740e-752.73PQQ_3 domain-containing protein (Fragment) n=1 Tax... [more]
D8LQF8_ECTSI2.420e-744.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G1T2T7_RABIT3.300e-750.82Aminoadipate-semialdehyde dehydrogenase n=3 Tax=Or... [more]
UPI0009E2835D6.180e-756.00acyl-CoA synthetase family member 4-like n=1 Tax=O... [more]
A0A3B5AM09_9TELE8.430e-749.18Aminoadipate-semialdehyde dehydrogenase n=2 Tax=St... [more]
A0A6S7H7P2_PARCT1.140e-637.31Acyl- synthetase family member 4 isoform X1 n=1 Ta... [more]
A0A6P5AVT1_BRABE2.150e-649.12acyl-CoA synthetase family member 4-like n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig107contigP-wetherbeei_contig107:12322..12561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQF8
Preferred nameAASDH
PFAMsAMP-binding,AMP-binding_C,PP-binding,PQQ,PQQ_2,PQQ_3
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K00142
Hectar predicted targeting categorysignal anchor
GOsGO:0001505,GO:0003674,GO:0003824,GO:0006082,GO:0006518,GO:0006520,GO:0006629,GO:0006631,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016877,GO:0016878,GO:0019184,GO:0019482,GO:0019752,GO:0032787,GO:0034641,GO:0042133,GO:0043038,GO:0043041,GO:0043043,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue3.96e-08
EggNOG OGsCOG1020@1|root,COG1520@1|root,KOG1178@2759|Eukaryota,KOG4649@2759|Eukaryota
Descriptionamino acid activation for nonribosomal peptide biosynthetic process
Cds size240
COG categoryQ
BRITEko00000,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185881.4268422-CDS-P-wetherbeei_contig107:12321..125611683185881.4268422-CDS-P-wetherbeei_contig107:12321..12561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig107 12322..12561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig107.2.1prot_P-wetherbeei_contig107.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig107 12322..12561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig107.2.1

>prot_P-wetherbeei_contig107.2.1 ID=prot_P-wetherbeei_contig107.2.1|Name=mRNA_P-wetherbeei_contig107.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
PCRFRCDDCGRSIACVVAAATGGLVAVLSLASGTVLVATQLGGEVFSSPV
AVDNAVVIGCRNDFVYVLRVRGLCCRAQP*
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mRNA from alignment at P-wetherbeei_contig107:12322..12561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig107.2.1 ID=mRNA_P-wetherbeei_contig107.2.1|Name=mRNA_P-wetherbeei_contig107.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig107:12322..12561+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGCCGCTTCCGGTGCGACGACTGCGGCAGGTCGATCGCGTGTGTAGT GGCGGCGGCGACCGGCGGACTCGTGGCGGTGCTCTCGCTGGCTTCTGGCA CAGTCCTCGTCGCTACACAGCTCGGCGGGGAGGTGTTCTCGTCGCCGGTG GCGGTGGACAATGCTGTCGTCATCGGGTGCCGCAACGACTTCGTCTACGT GTTGCGGGTGCGCGGGCTTTGTTGCCGGGCGCAGCCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig107:12322..12561+

>mRNA_P-wetherbeei_contig107.2.1 ID=mRNA_P-wetherbeei_contig107.2.1|Name=mRNA_P-wetherbeei_contig107.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig107:12322..12561+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGCCGCTTCCGGTGCGACGACTGCGGCAGGTCGATCGCGTGTGTAGT
GGCGGCGGCGACCGGCGGACTCGTGGCGGTGCTCTCGCTGGCTTCTGGCA
CAGTCCTCGTCGCTACACAGCTCGGCGGGGAGGTGTTCTCGTCGCCGGTG
GCGGTGGACAATGCTGTCGTCATCGGGTGCCGCAACGACTTCGTCTACGT
GTTGCGGGTGCGCGGGCTTTGTTGCCGGGCGCAGCCGTAG
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