mRNA_P-wetherbeei_contig1948.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1948.1.1
Unique NamemRNA_P-wetherbeei_contig1948.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: W6MH53_9EUCA (Peroxiredoxin-like-1 protein (Fragment) n=1 Tax=Coenobita clypeatus TaxID=474045 RepID=W6MH53_9EUCA)

HSP 1 Score: 77.0 bits (188), Expect = 6.410e-18
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQFVDEHGEVCPAGWKPG K MKADP+GSKE+F
Sbjct:    1 RLVQAFQFVDEHGEVCPAGWKPGAKTMKADPSGSKEYF 38
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A0A836CJ15_9STRA (Natural killer enhancing factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ15_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.870e-17
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWFAGAHK 129
            RL++AFQ+ D+HGEVCPAGWKPG+K MKADPTGSKE+FAG  +
Sbjct:  176 RLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGVEE 218
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A0A7G3S0M2_ERISI (Peroxiredoxin n=1 Tax=Eriocheir sinensis TaxID=95602 RepID=A0A7G3S0M2_ERISI)

HSP 1 Score: 78.2 bits (191), Expect = 9.470e-17
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWFA 117
            RL++AFQFVD+HGEVCPAGWKPG K MKADPTGSKE+F+
Sbjct:  157 RLVQAFQFVDKHGEVCPAGWKPGSKTMKADPTGSKEYFS 195
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: W6MH28_PAGBR (Peroxiredoxin-like-1 protein (Fragment) n=1 Tax=Pagurus bernhardus TaxID=174397 RepID=W6MH28_PAGBR)

HSP 1 Score: 77.0 bits (188), Expect = 1.050e-16
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQFVDEHGEVCPAGWKPG K MKADP+GSKE+F
Sbjct:  113 RLVQAFQFVDEHGEVCPAGWKPGAKTMKADPSGSKEYF 150
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A0A5B7D5J8_PORTR (Peroxiredoxin 1 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7D5J8_PORTR)

HSP 1 Score: 76.6 bits (187), Expect = 1.120e-16
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQFVD+HGEVCPAGWKPG K MKADP GSKE+F
Sbjct:   89 RLVQAFQFVDKHGEVCPAGWKPGSKSMKADPVGSKEYF 126
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A0A0B4L994_MACNP (Peroxiredoxin n=1 Tax=Macrobrachium nipponense TaxID=159736 RepID=A0A0B4L994_MACNP)

HSP 1 Score: 77.8 bits (190), Expect = 1.330e-16
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQF DEHGEVCPAGWKPG K MKADPTGSKE+F
Sbjct:  157 RLVQAFQFTDEHGEVCPAGWKPGSKTMKADPTGSKEYF 194
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A0A2H4GVG3_PENMO (Peroxiredoxin n=4 Tax=Penaeus TaxID=133894 RepID=A0A2H4GVG3_PENMO)

HSP 1 Score: 77.0 bits (188), Expect = 2.650e-16
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQF DEHGEVCPAGWKPG K MKADPTGSKE+F
Sbjct:  157 RLVQAFQFTDEHGEVCPAGWKPGAKTMKADPTGSKEYF 194
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: A8R072_PENJP (Peroxiredoxin n=3 Tax=Penaeus TaxID=133894 RepID=A8R072_PENJP)

HSP 1 Score: 77.0 bits (188), Expect = 2.650e-16
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWF 114
            RL++AFQF DEHGEVCPAGWKPG K MKADPTGSKE+F
Sbjct:  157 RLVQAFQFTDEHGEVCPAGWKPGAKTMKADPTGSKEYF 194
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: B6DTL7_BODSA (Tryparedoxin peroxidase n=1 Tax=Bodo saltans TaxID=75058 RepID=B6DTL7_BODSA)

HSP 1 Score: 77.0 bits (188), Expect = 2.650e-16
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWFAGA 123
            RLL+AFQFV+EHGEVCPAGWKPG K MKADP GS+E+F  A
Sbjct:  158 RLLQAFQFVEEHGEVCPAGWKPGSKSMKADPKGSQEYFGSA 198
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BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Match: UPI001E678C86 (peroxiredoxin 1-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E678C86)

HSP 1 Score: 77.4 bits (189), Expect = 3.700e-16
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWFA 117
            RL++AFQFV+EHGEVCPAGWKPG K MKADPTGSKE+F+
Sbjct:  196 RLVQAFQFVEEHGEVCPAGWKPGAKTMKADPTGSKEYFS 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1948.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W6MH53_9EUCA6.410e-1884.21Peroxiredoxin-like-1 protein (Fragment) n=1 Tax=Co... [more]
A0A836CJ15_9STRA3.870e-1774.42Natural killer enhancing factor n=1 Tax=Tribonema ... [more]
A0A7G3S0M2_ERISI9.470e-1782.05Peroxiredoxin n=1 Tax=Eriocheir sinensis TaxID=956... [more]
W6MH28_PAGBR1.050e-1684.21Peroxiredoxin-like-1 protein (Fragment) n=1 Tax=Pa... [more]
A0A5B7D5J8_PORTR1.120e-1681.58Peroxiredoxin 1 n=1 Tax=Portunus trituberculatus T... [more]
A0A0B4L994_MACNP1.330e-1684.21Peroxiredoxin n=1 Tax=Macrobrachium nipponense Tax... [more]
A0A2H4GVG3_PENMO2.650e-1684.21Peroxiredoxin n=4 Tax=Penaeus TaxID=133894 RepID=A... [more]
A8R072_PENJP2.650e-1684.21Peroxiredoxin n=3 Tax=Penaeus TaxID=133894 RepID=A... [more]
B6DTL7_BODSA2.650e-1678.05Tryparedoxin peroxidase n=1 Tax=Bodo saltans TaxID... [more]
UPI001E678C863.700e-1682.05peroxiredoxin 1-like isoform X1 n=2 Tax=Procambaru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1948contigP-wetherbeei_contig1948:525..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog69319.XP_008546058.1
Preferred nameJafrac1
PFAMs1-cysPrx_C,AhpC-TSA
Model size132
Max annot lvl33208|Metazoa
KEGG koko:K03386,ko:K13279
KEGG Pathwayko04146,ko04214,map04146,map04214
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006928,GO:0006950,GO:0006979,GO:0007155,GO:0007275,GO:0007276,GO:0007281,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008354,GO:0008379,GO:0009056,GO:0009605,GO:0009636,GO:0009987,GO:0009991,GO:0010259,GO:0016209,GO:0016477,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0022610,GO:0030154,GO:0031667,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0040011,GO:0042221,GO:0042592,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043230,GO:0044237,GO:0044248,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045454,GO:0048468,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051674,GO:0051704,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070062,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1903561,GO:1990748
Exons2
Evalue1.26e-15
EggNOG OGsCOG0450@1|root,KOG0852@2759|Eukaryota,38B9P@33154|Opisthokonta,3B9IG@33208|Metazoa,3CS1I@33213|Bilateria,41X1P@6656|Arthropoda,3SIJE@50557|Insecta,46E3E@7399|Hymenoptera
EC1.11.1.15
DescriptionRedoxin
Cds size132
COG categoryO
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.6223776-CDS-P-wetherbeei_contig1948:524..5781683186173.6223776-CDS-P-wetherbeei_contig1948:524..578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1948 525..578 +
1683186173.6427398-CDS-P-wetherbeei_contig1948:789..8671683186173.6427398-CDS-P-wetherbeei_contig1948:789..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1948 790..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1948.1.1prot_P-wetherbeei_contig1948.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1948 525..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1948.1.1

>prot_P-wetherbeei_contig1948.1.1 ID=prot_P-wetherbeei_contig1948.1.1|Name=mRNA_P-wetherbeei_contig1948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
RLLKAFQFVDEHGEVCPAGWKPGDKGMKADPTGSKEWFAGAHK*
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mRNA from alignment at P-wetherbeei_contig1948:525..867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1948.1.1 ID=mRNA_P-wetherbeei_contig1948.1.1|Name=mRNA_P-wetherbeei_contig1948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=343bp|location=Sequence derived from alignment at P-wetherbeei_contig1948:525..867+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGCTAAAGGCCTTCCAGTTCGTCGACGAGCATGGCGAGGTTTGCCC
TGCGGTGAGTTCAGTCTGTCGTCTTTTTTTGTACCGCTGGCGTATATACC
GGCGTGGCCTGCTCCGCTCGATGGACATGTACAAATTCCTTGGAAGGCAA
GGTCCGGGTGGGTATTAAGGTCTACGTTATCAGCTTTAAAACTCCGCTGA
CTGGGTCTGCATGTGCAATCCTGCCTCCACTCTTTCTCGTACATGTATGT
TCTCTGGGGCTGCAGGGCTGGAAGCCTGGAGACAAGGGCATGAAGGCCGA
CCCGACTGGGAGCAAGGAGTGGTTCGCGGGCGCTCACAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1948:525..867+

>mRNA_P-wetherbeei_contig1948.1.1 ID=mRNA_P-wetherbeei_contig1948.1.1|Name=mRNA_P-wetherbeei_contig1948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1948:525..867+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGCTAAAGGCCTTCCAGTTCGTCGACGAGCATGGCGAGGTTTGCCC
TGCGGGCTGGAAGCCTGGAGACAAGGGCATGAAGGCCGACCCGACTGGGA
GCAAGGAGTGGTTCGCGGGCGCTCACAAGTGA
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