mRNA_P-wetherbeei_contig19417.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19417.1.1
Unique NamemRNA_P-wetherbeei_contig19417.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A835YU62_9STRA (Tocopherol polyprenyltransferase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU62_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.090e-25
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YNI T A R GV + A  A +VL LNY+SA+ EAA+ PA  FN+ +M  GH  F  YL+R+   L+   KESVKAFYARIWDLFY EYLLYPFI
Sbjct:  226 YNISTFAVRAGVARIANAACIVLGLNYVSAIVEAALVPA--FNKAIMIAGHSAFALYLYRARTKLQPDSKESVKAFYARIWDLFYLEYLLYPFI 317          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A7S3XLT2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLT2_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 1.680e-21
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            Y + T A+R+GV+K A  +S+VL  NY+SAV  AA APA  F + VM V H LF  YL++S+  L A    S+K FY RIWDLFYA+Y +YPFI
Sbjct:  218 YGVSTFATRLGVRKVAKYSSLVLGANYVSAVLNAAFAPAHHFRKPVMVVAHTLFAGYLFKSYKELDAESTASIKQFYGRIWDLFYAQYCIYPFI 311          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: D7FLG8_ECTSI (Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.780e-20
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YNI T AS+ GV+  A  AS +L +NY+SA+AE  ++PA  FNRRVM  GH   LA L  +   L   ++ S+K FY RIWDLFY EY +YPF+
Sbjct:  196 YNISTFASKRGVKFTARAASAILAVNYLSAIAEGILSPAGTFNRRVMVGGHSALLAILGLAIRRLVPDDQGSIKRFYLRIWDLFYLEYAMYPFM 289          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A6H5JNV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.660e-20
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            Y I T AS+ GV+  A  AS VL +NY+SA+AE A++PA  FNRRVM  GH   LA L  +   L   ++ S+K FY RIWDLFY EY +YPF+
Sbjct:  320 YKISTFASKRGVKFTARAASAVLAVNYLSAIAEGALSPAGTFNRRVMVGGHSALLAILGLAIRKLVPDDQGSIKRFYLRIWDLFYLEYAMYPFM 413          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: H6WB95_VAULI (Tocopherol polyprenyltransferase-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB95_VAULI)

HSP 1 Score: 90.5 bits (223), Expect = 2.360e-19
Identity = 54/94 (57.45%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            +NI T A R G +K A     VL +NY SAV EA   P   FNR VM  GH LF AYL R+ A   AG+KES K+FYA+IW+LFY EYLLYPFI
Sbjct:  318 FNINTWAVRAGSEKVANVGCAVLGVNYASAVVEAVTCPG--FNRGVMVGGHCLFGAYLLRARAMFVAGQKESSKSFYAKIWNLFYMEYLLYPFI 409          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: W7TS50_9STRA (Tocopherol polyprenyltransferase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS50_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.970e-19
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YN+RT A+RVGV+  A GA+ VL LNY+SA+A+  + P+ AF + VM  GH +  A L + +  L      S+KAFY  IWDLFY EY LYPF+
Sbjct:  309 YNVRTFATRVGVKNMARGAAGVLFLNYLSAIAQGVVNPSGAFRQWVMVGGHTVLAALLIQRYKKLEPDSLASIKAFYKSIWDLFYLEYALYPFL 402          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A7S2UTD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTD4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.730e-18
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YNI TL  R GV   A  A+ VL+ NYISA+    +APA  FN+ VM  GH LF  +L + +  L A    SVK FY  IWDLFYAEY LYPFI
Sbjct:  294 YNINTLTVRKGVPAVAKLATGVLLANYISAIVNGIVAPAQQFNKVVMVSGHALFSVWLIKLYKDLNASSTTSVKKFYKGIWDLFYAEYCLYPFI 387          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A7S0AKR4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AKR4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.180e-14
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YNI TLA++VG+ K A GA+V L+LNYISA+ +  +A    FN+  M  GH      L   F  L A    SVK +Y  IWD FY EYLLY  I
Sbjct:  201 YNIETLATKVGIPKIAKGATVCLLLNYISAIGQGLLATPGTFNKIPMIGGHLALATMLLVRFRKLDADSIPSVKLYYKHIWDNFYLEYLLYTLI 294          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: A0A7S2TSF5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TSF5_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 4.420e-14
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            + ++T ASR+G +K A  A + L  NY+ A+  A  +    FN  +M   H      L R+   L   ++ S+K FYARIWDLFY EY LYPF+
Sbjct:   11 FGVKTFASRLGAKKVALMACLTLGANYVHAIGTALFSQPGTFNTPLMVGAHAALALMLARNHKKLDPDDQTSIKRFYARIWDLFYLEYALYPFL 104          
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Match: B8CAB5_THAPS (Tocopherol polyprenyltransferase-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAB5_THAPS)

HSP 1 Score: 72.8 bits (177), Expect = 3.250e-13
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    1 YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVGHGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI 282
            YNI T A+++GV K A GA++ L LNYI A+    ++ A  F    M  GH    A L   F  L      S+K +Y  IWDLFYAEY+LY  I
Sbjct:  204 YNISTFATKIGVPKIAKGATLCLFLNYIHAILTGVLSKAGTFRALPMIGGHAALAALLLTRFKELDPESMPSIKKYYKHIWDLFYAEYVLYTLI 297          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU62_9STRA4.090e-2559.57Tocopherol polyprenyltransferase-like protein n=1 ... [more]
A0A7S3XLT2_HETAK1.680e-2153.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FLG8_ECTSI1.780e-2051.06Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JNV9_9PHAE6.660e-2052.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H6WB95_VAULI2.360e-1957.45Tocopherol polyprenyltransferase-like protein n=1 ... [more]
W7TS50_9STRA5.970e-1950.00Tocopherol polyprenyltransferase-like protein n=2 ... [more]
A0A7S2UTD4_9STRA2.730e-1853.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0AKR4_9STRA1.180e-1447.87Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2TSF5_9EUKA4.420e-1440.43Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
B8CAB5_THAPS3.250e-1343.62Tocopherol polyprenyltransferase-like protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19417contigP-wetherbeei_contig19417:263..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FLG8
Preferred nameVTE2-2
PFAMsUbiA
Model size285
Max annot lvl2759|Eukaryota
KEGG rclassRC01840
KEGG koko:K12501
KEGG ReactionR08782
KEGG Pathwayko00130,map00130
Hectar predicted targeting categorychloroplast
Exons1
Evalue2.92e-21
EggNOG OGsCOG0382@1|root,2QUHT@2759|Eukaryota
EC2.5.1.117
Descriptionhomogentisate solanyltransferase activity
Cds size285
COG categoryH
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.6350775-CDS-P-wetherbeei_contig19417:262..5471683186171.6350775-CDS-P-wetherbeei_contig19417:262..547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19417 263..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19417.1.1prot_P-wetherbeei_contig19417.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19417 263..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19417.1.1

>prot_P-wetherbeei_contig19417.1.1 ID=prot_P-wetherbeei_contig19417.1.1|Name=mRNA_P-wetherbeei_contig19417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
YNIRTLASRVGVQKAAAGASVVLVLNYISAVAEAAMAPAAAFNRRVMTVG
HGLFLAYLWRSFAALRAGEKESVKAFYARIWDLFYAEYLLYPFI*
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mRNA from alignment at P-wetherbeei_contig19417:263..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19417.1.1 ID=mRNA_P-wetherbeei_contig19417.1.1|Name=mRNA_P-wetherbeei_contig19417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig19417:263..547+ (Phaeothamnion wetherbeei SAG_119_79)
TACAACATCCGAACGCTGGCGTCGCGGGTCGGGGTTCAGAAGGCGGCGGC GGGCGCCTCGGTGGTGCTCGTGCTGAACTACATCTCGGCCGTGGCAGAGG CGGCAATGGCACCCGCCGCAGCCTTTAACCGGCGGGTCATGACGGTCGGC CACGGCCTCTTCCTAGCCTACCTGTGGCGGAGCTTCGCGGCTCTGCGGGC TGGGGAGAAGGAGAGCGTCAAGGCGTTTTACGCGCGTATCTGGGACCTTT TCTACGCCGAGTACCTACTGTACCCGTTCATTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19417:263..547+

>mRNA_P-wetherbeei_contig19417.1.1 ID=mRNA_P-wetherbeei_contig19417.1.1|Name=mRNA_P-wetherbeei_contig19417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig19417:263..547+ (Phaeothamnion wetherbeei SAG_119_79)
TACAACATCCGAACGCTGGCGTCGCGGGTCGGGGTTCAGAAGGCGGCGGC
GGGCGCCTCGGTGGTGCTCGTGCTGAACTACATCTCGGCCGTGGCAGAGG
CGGCAATGGCACCCGCCGCAGCCTTTAACCGGCGGGTCATGACGGTCGGC
CACGGCCTCTTCCTAGCCTACCTGTGGCGGAGCTTCGCGGCTCTGCGGGC
TGGGGAGAAGGAGAGCGTCAAGGCGTTTTACGCGCGTATCTGGGACCTTT
TCTACGCCGAGTACCTACTGTACCCGTTCATTTGA
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