mRNA_P-wetherbeei_contig1924.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1924.1.1
Unique NamemRNA_P-wetherbeei_contig1924.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1924.1.1 vs. uniprot
Match: A0A7S3Y456_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y456_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 5.210e-14
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    4 PAYKLGNAQTSSRENVELFDAAKRGDLRSLRSALSAGGNPNYYKHPEEGATALLAASATGHADVIRTLLEAGAAVGERLITNHNGPLHI 270
            P Y     Q  +  +  L++AAK G+L  ++  LS GGNPN++ H +EGATAL AA   GH +  R L+  GAAV  RL+T+ +  LH+
Sbjct:   32 PEYYKAENQQKTPISTSLYEAAKEGNLVKIQECLSEGGNPNWFNHDDEGATALFAACIGGHLEAARALVAGGAAVEPRLLTSKDTVLHM 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1924.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y456_HETAK5.210e-1442.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1924contigP-wetherbeei_contig1924:667..1176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMW3
PFAMsAnk_2,Ank_4
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.51e-13
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_003870.1
Descriptionspectrin binding
Cds size339
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.5363262-CDS-P-wetherbeei_contig1924:666..9311683186167.5363262-CDS-P-wetherbeei_contig1924:666..931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1924 667..931 -
1683186167.5475998-CDS-P-wetherbeei_contig1924:1102..11761683186167.5475998-CDS-P-wetherbeei_contig1924:1102..1176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1924 1103..1176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1924.1.1prot_P-wetherbeei_contig1924.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1924 667..1176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1924.1.1

>prot_P-wetherbeei_contig1924.1.1 ID=prot_P-wetherbeei_contig1924.1.1|Name=mRNA_P-wetherbeei_contig1924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
YPAYKLGNAQTSSRENVELFDAAKRGDLRSLRSALSAGGNPNYYKHPEEG
ATALLAASATGHADVIRTLLEAGAAVGERLITNHNGPLHIAAAAGHLEAV
ELLLRAGALINTG
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mRNA from alignment at P-wetherbeei_contig1924:667..1176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1924.1.1 ID=mRNA_P-wetherbeei_contig1924.1.1|Name=mRNA_P-wetherbeei_contig1924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig1924:667..1176- (Phaeothamnion wetherbeei SAG_119_79)
TACCCGGCCTACAAGCTCGGCAACGCGCAAACGTCGTCAAGAGAGAATGT
TGAGCTATTTGATGCAGCAAAGAGGTGAGATCGAACCTGGATTGCAGGAG
GTCGCAGTCGTTTTGTTCTCACCGAGTTGCACGAGAGGGCCCTTGAATAG
CGCACGGGAGTCAGTCAGAAGAGAGGTTGTCGTGGTTTTAGCGATTAAAA
TCCATCTCCAAACGCTACCTTTACATTCCCCGCCTCTCCCTACAGAGGCG
ACTTGCGATCATTGCGTTCAGCGCTGAGTGCCGGCGGAAATCCCAACTAC
TACAAACACCCAGAAGAAGGCGCCACGGCGCTGCTGGCAGCCAGCGCCAC
CGGCCATGCAGACGTAATTCGGACCCTCTTGGAGGCGGGCGCGGCCGTGG
GTGAGAGGCTCATCACGAATCACAACGGGCCTCTCCACATCGCGGCCGCC
GCGGGCCACTTAGAGGCCGTGGAGCTGCTCCTCCGGGCAGGCGCCCTGAT
TAACACGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1924:667..1176-

>mRNA_P-wetherbeei_contig1924.1.1 ID=mRNA_P-wetherbeei_contig1924.1.1|Name=mRNA_P-wetherbeei_contig1924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig1924:667..1176- (Phaeothamnion wetherbeei SAG_119_79)
TACCCGGCCTACAAGCTCGGCAACGCGCAAACGTCGTCAAGAGAGAATGT
TGAGCTATTTGATGCAGCAAAGAGAGGCGACTTGCGATCATTGCGTTCAG
CGCTGAGTGCCGGCGGAAATCCCAACTACTACAAACACCCAGAAGAAGGC
GCCACGGCGCTGCTGGCAGCCAGCGCCACCGGCCATGCAGACGTAATTCG
GACCCTCTTGGAGGCGGGCGCGGCCGTGGGTGAGAGGCTCATCACGAATC
ACAACGGGCCTCTCCACATCGCGGCCGCCGCGGGCCACTTAGAGGCCGTG
GAGCTGCTCCTCCGGGCAGGCGCCCTGATTAACACGGGC
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