mRNA_P-wetherbeei_contig19200.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19200.1.1
Unique NamemRNA_P-wetherbeei_contig19200.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19200.1.1 vs. uniprot
Match: A0A6H5KJG2_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   25 VLQPPPRGLRSCCAVQRVRATLRTYFRMFLQEQRPI 132
            +LQP P+GL+S C +QR R+T+RTYFR+FLQEQRP+
Sbjct:  238 LLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPL 273
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BLAST of mRNA_P-wetherbeei_contig19200.1.1 vs. uniprot
Match: D8LGZ8_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   25 VLQPPPRGLRSCCAVQRVRATLRTYFRMFLQEQRPI 132
            +LQP P+GL+S C +QR R+T+RTYFR+FLQEQRP+
Sbjct:  168 LLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPL 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJG2_9PHAE2.780e-866.67Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGZ8_ECTSI2.780e-866.67Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19200contigP-wetherbeei_contig19200:38..169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-14_001300.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.4826326-CDS-P-wetherbeei_contig19200:37..1691683186166.4826326-CDS-P-wetherbeei_contig19200:37..169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19200 38..169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19200.1.1prot_P-wetherbeei_contig19200.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19200 38..169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19200.1.1

>prot_P-wetherbeei_contig19200.1.1 ID=prot_P-wetherbeei_contig19200.1.1|Name=mRNA_P-wetherbeei_contig19200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MALVLAGAVLQPPPRGLRSCCAVQRVRATLRTYFRMFLQEQRPI
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mRNA from alignment at P-wetherbeei_contig19200:38..169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19200.1.1 ID=mRNA_P-wetherbeei_contig19200.1.1|Name=mRNA_P-wetherbeei_contig19200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig19200:38..169- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGGTGTTGGCGGGGGCAGTGCTGCAGCCGCCGCCTCGGGGGCT
GCGGTCGTGCTGCGCCGTGCAGCGGGTGAGGGCGACGCTTCGGACGTACT
TTCGCATGTTTCTGCAGGAACAGCGGCCGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19200:38..169-

>mRNA_P-wetherbeei_contig19200.1.1 ID=mRNA_P-wetherbeei_contig19200.1.1|Name=mRNA_P-wetherbeei_contig19200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig19200:38..169- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGGTGTTGGCGGGGGCAGTGCTGCAGCCGCCGCCTCGGGGGCT
GCGGTCGTGCTGCGCCGTGCAGCGGGTGAGGGCGACGCTTCGGACGTACT
TTCGCATGTTTCTGCAGGAACAGCGGCCGATC
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