mRNA_P-wetherbeei_contig1920.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1920.3.1
Unique NamemRNA_P-wetherbeei_contig1920.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1920.3.1 vs. uniprot
Match: A0A7S2Y118_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y118_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.980e-5
Identity = 28/94 (29.79%), Postives = 59/94 (62.77%), Query Frame = 3 
Query:   78 FTYTYSLLSSVSEFYRHTAFFYVKRKAWFERIALAYHILDNCVLVLLLTVITARLL-RTATDFMDIALDAVVLYFIADIDKMLISEFDQAHLKQ 356
            FT  Y    +++EFY HT   + + ++   R+ +A +++ N +  + L   TA +L R+++ F++I L++V +YF+AD+D M++ + D+  L++
Sbjct:    1 FTSNYVFSMAIAEFYTHTLAVFAESRSMIARMLIAANVMINSIFSVTLIFSTATILKRSSSSFLEIVLNSVAVYFVADLDDMMVWDVDEEVLEE 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1920.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2Y118_9STRA4.980e-529.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1920contigP-wetherbeei_contig1920:4090..6129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size931
Hectar predicted targeting categorysignal peptide
Exons6
Cds size594
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1920.3.1prot_P-wetherbeei_contig1920.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1920 4374..6076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.2944484-UTR-P-wetherbeei_contig1920:4089..43731683186166.2944484-UTR-P-wetherbeei_contig1920:4089..4373Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1920 4090..4373 -
1683186166.3726451-UTR-P-wetherbeei_contig1920:6076..61291683186166.3726451-UTR-P-wetherbeei_contig1920:6076..6129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1920 6077..6129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.3099189-CDS-P-wetherbeei_contig1920:4373..46461683186166.3099189-CDS-P-wetherbeei_contig1920:4373..4646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 4374..4646 -
1683186166.3243034-CDS-P-wetherbeei_contig1920:4802..48581683186166.3243034-CDS-P-wetherbeei_contig1920:4802..4858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 4803..4858 -
1683186166.3406622-CDS-P-wetherbeei_contig1920:5050..50741683186166.3406622-CDS-P-wetherbeei_contig1920:5050..5074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 5051..5074 -
1683186166.3504531-CDS-P-wetherbeei_contig1920:5332..53881683186166.3504531-CDS-P-wetherbeei_contig1920:5332..5388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 5333..5388 -
1683186166.357922-CDS-P-wetherbeei_contig1920:5650..57331683186166.357922-CDS-P-wetherbeei_contig1920:5650..5733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 5651..5733 -
1683186166.3654-CDS-P-wetherbeei_contig1920:5974..60761683186166.3654-CDS-P-wetherbeei_contig1920:5974..6076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1920 5975..6076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1920.3.1

>prot_P-wetherbeei_contig1920.3.1 ID=prot_P-wetherbeei_contig1920.3.1|Name=mRNA_P-wetherbeei_contig1920.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
MASLIIIAFTYTYSLLSSVSEFYRHTAFFYVKRKAWFERIALAYHILDNC
VLVLLLTVITARLLRTATDFMDIALDAVVLYFIADIDKMLISEFDQAHLK
QCFGRNAVRILQESGRSRDHCFMASRVRACAAARQAKSGSSSGNGGGSAK
AKDMEGLWAYGVPAEHFATYDTYAGVALVVTAQVALVFAIIEYWQLF*
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mRNA from alignment at P-wetherbeei_contig1920:4090..6129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1920.3.1 ID=mRNA_P-wetherbeei_contig1920.3.1|Name=mRNA_P-wetherbeei_contig1920.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2040bp|location=Sequence derived from alignment at P-wetherbeei_contig1920:4090..6129- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGCTGGAGGCGGCGGAAGATCGCACCGACTCAGGCACCCTCTTCACG
CTGATGGCCAGCCTCATCATCATCGCCTTCACGTACACGTACAGCCTGCT
CTCCTCCGTCAGCGAGTTCTACCGGCACACCGCCTTCTTCTACGTCAAGC
GAAAAGTGCGATAGTTCTTTCGCTCATGCCGTGGTTTGATCCACCACCCT
CCTCATCGCTGCCGTCCACCGCATTTTCGCAGTTGGCCACCCCGCTGTCG
TTGCCGCCATTGGACGCCGTTTGTCGCTGTCGCCGCCGCCACCGCTGCTG
CCCCTGCCTCCCCGTGTTACTGCCTGTCGCTTTGATTATAATGTTTCTTT
TTTAATTTTCACTGCTGCTTTTTACATCGTTTGCGGTCTGCTGCAGGCAT
GGTTCGAGCGGATCGCACTTGCGTATCACATCCTAGACAACTGCGTGTTG
GTCCTGCTGCTCACCGTCATTACCGCCAGGTCAGACTTGTGGCCAAGGCT
CTGCGCCACCATGTTTCCTTCCTTTCTCCAATATTACATACGCTGTGAGG
TGTTTTTGTTCAAAGTCCAGCTAGAAACGCTTCTGTCTGCGATTTCATGG
AATGCCGGAAAAAGTTTTGTTTGTGCTTGCTGCGTTTTTTGAAGATGACG
CTTCTCCGTTGAATCGCTGGGGTGTTCTGCATCTGGTGGCCTAATACACT
GAAGTTGCGCCTTCCCCCCTAACATAACACCGATGCCGCAGGCTCTTACG
GACGGCGACGGACTTCATGGACATCGCCCTCGACGCCGTCGTCTTGTGTG
AGTCGGCGGGCCGTCTGTGTTTGCAAGTCGGGGCGTGTCACTTGCACCCC
AAGATCGTTGCTGCCTGTGTCGCTGCGACCGCTGCCGTAGCCATCACCCG
CGGCCGCTATCCACCGCCGCTGACGTAGCTGTGCGTTTTAGTAGTCCTTC
CGCTGTCGTTGCTCAACCATTGCACGCAGTAGAGACGAGATTTATTAACC
TCCTACCTCCATCTTCCTTGCAATCTTCCTTGCCTTCGACCCGTCCCTGC
CGCAGATTTCATTGCCGATATTGACAAAAGTGAGCTTGTGCCTGGCAATG
ACGAAGATGGAATAGTTTTGAGTTTAGGTCTACTGTGGAACCGGCTAAAG
TCTTTATTTTTCGTATGCGTTGTGAAAATCTAGATTTCCTTGAAATTTCT
GAGCCTCGCTCTTGATTGCTGCCTGCCGCGCCGCCGCCGCTTACGCTGCC
AACGCTGTGGTTACCTACCAGTGCTCATCTCCGAGTTCGATCAGGCGCAC
CTGAAGCAGTGCTTCGGAAGGAATGCGGTAAGCTGGTCGTGAGGCTGGAT
GAAACTACAGGTAGCGCCGTCCAACCGTTGGAAGACAGTTCCTTCGGCAG
CCTTGCATTGCTAGCCTTGACATGGGCCCCCATTCTGATCGTCGATCTCA
TCTCTTCCTTTCTGGCAACGCGCCCACCGGCAGGTGCGCATTTTGCAAGA
GTCGGGACGCTCGCGCGACCACTGCTTCATGGCCAGCCGCGTCCGCGCCT
GCGCTGCGGCACGCCAGGCCAAGTCTGGCAGCAGTAGTGGCAACGGCGGT
GGCAGCGCCAAGGCGAAGGACATGGAGGGGCTGTGGGCGTACGGGGTGCC
GGCGGAGCACTTCGCTACGTATGATACTTATGCGGGGGTCGCGTTGGTGG
TGACGGCGCAGGTGGCGCTGGTGTTTGCAATCATAGAGTACTGGCAGCTC
TTCTAGTCAGCCATGGAAGCTGTTTTAGCCCGCCGCCGGCCCGGCTGGGG
CGGTTCATCTTTTCGCGCGCTTTAGCCTGGGTGTGAGGGTTGCGGGAAAG
GCAAAGTCCGCCTTTTTGTTAAGAATTTTGGCTTGCAATGGAGGGGGGCG
TTGGGCGCGGTGTGGGTGATCTCGTAAAAACACAAAATCCTGTCGCTAGT
GTCGACGAAGGCGTAGAAGGAAATCAATTTCTGTATCGCGGTTTAGCCCA
GCGCTTCATGTTTGTTAAAAGAGTGAATCAAACGTAAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1920:4090..6129-

>mRNA_P-wetherbeei_contig1920.3.1 ID=mRNA_P-wetherbeei_contig1920.3.1|Name=mRNA_P-wetherbeei_contig1920.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig1920:4090..6129- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGCCTCATCATCATCGCCTTCACGTACACGTACAGCCTGCTCTC
CTCCGTCAGCGAGTTCTACCGGCACACCGCCTTCTTCTACGTCAAGCGAA
AAGCATGGTTCGAGCGGATCGCACTTGCGTATCACATCCTAGACAACTGC
GTGTTGGTCCTGCTGCTCACCGTCATTACCGCCAGGCTCTTACGGACGGC
GACGGACTTCATGGACATCGCCCTCGACGCCGTCGTCTTGTATTTCATTG
CCGATATTGACAAAATGCTCATCTCCGAGTTCGATCAGGCGCACCTGAAG
CAGTGCTTCGGAAGGAATGCGGTGCGCATTTTGCAAGAGTCGGGACGCTC
GCGCGACCACTGCTTCATGGCCAGCCGCGTCCGCGCCTGCGCTGCGGCAC
GCCAGGCCAAGTCTGGCAGCAGTAGTGGCAACGGCGGTGGCAGCGCCAAG
GCGAAGGACATGGAGGGGCTGTGGGCGTACGGGGTGCCGGCGGAGCACTT
CGCTACGTATGATACTTATGCGGGGGTCGCGTTGGTGGTGACGGCGCAGG
TGGCGCTGGTGTTTGCAATCATAGAGTACTGGCAGCTCTTCTAG
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