mRNA_P-wetherbeei_contig1909.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1909.2.1
Unique NamemRNA_P-wetherbeei_contig1909.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1909.2.1 vs. uniprot
Match: A0A4Q2UKJ5_9BACT (Uncharacterized protein n=3 Tax=Spirosoma TaxID=107 RepID=A0A4Q2UKJ5_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 5.270e-13
Identity = 62/239 (25.94%), Postives = 112/239 (46.86%), Query Frame = 1 
Query:  247 CEQDRRGHLIREPSNCTSDLAFLAVALYMLRKAADDRKRKHSVDESPLKARPELSLLCGVSNVLQFLGTSFNHASRTHEGHRCDCTCMYGVVWYFVPYAVVRQRYWKHGGIRRSEMVLFVASLAAGLLLFWPLTSVYYTDPRCELIEALTVA-SLALLTLALDRRFTRRHRGNIVLRGSLIGAAAGVLIFGAICQKLDIRKVGCNPMSFFQLHGVWHCCSASTLLLVYQYFRSERRVAP 960
            CE +    +  +P N  S+LA+L   +++L  A  D++       + +   P LS L G   V   LG++F HAS T+ G R D    Y ++   V   +    +     ++ ++  L+V  L A + L+ PL  +    P   L+ AL +  ++ +L   +  R  +R  G ++L   LI       +     + +D+RK+ C+P S++Q H +WH  +A +    Y +FR ++   P
Sbjct:   51 CEFNHPHRVFHQPINTYSNLAYLFFGVFILLVAYQDQQNHGLPVTNRMAGFPLLSGLMGACFVYLCLGSAFFHASLTYVGQRVDMNATYSILLTLVGITIYHVFHKLQ--LKPTQQRLWVVVLLALIGLWAPLALLV---PSSRLVPALILLLNVGMLVNYVQFR-VQRSIGLVLLSFVLI-------VLAIYIRTMDVRKINCDPYSYYQGHALWHVLTALSSFCSYCFFRFDKASNP 276
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BLAST of mRNA_P-wetherbeei_contig1909.2.1 vs. uniprot
Match: A0A521GFB2_9BACT (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A521GFB2_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 7.010e-12
Identity = 57/231 (24.68%), Postives = 97/231 (41.99%), Query Frame = 1 
Query:  247 CEQDRRGHLIREPSNCTSDLAFLAVALYMLRKAADDRKRKHSVDESPLKARPELSLLCGVSNVLQFLGTSFNHASRTHEGHRCDCTCMYGVVWYFVPYAVVRQRYWKHGGIRRSEMVLFVASLAAGLLLFWPLTSVYYTDPRCELIEALTVASLALLTLALDRRFTRRHRGNIVLRGSLIGAAAGVLIFGAICQKLDIRKVGCNPMSFFQLHGVWHCCSASTLLLVYQYFR 939
            CE +       + SN  S+L F    + +   A +D K K++  E+ ++  PELS+L G   +    G+SF HAS T  G R D   +Y +       A++   Y       R  +     +L    LL   +                    L  +   ++    R+ R  ++   S +     +++  A  ++LD+ K+GC+P+S FQ H +WH  S  +  L Y +FR
Sbjct:   50 CELNNHERFFHQSSNTYSNLFFFFFGILICLVAREDFKNKNA--ENRMQQFPELSMLMGFCFIYLCFGSSFFHASLTWIGQRADMNGVYSLNIVLATIALLNVFY-------RISLSNRSRNLLIAFLLILIVXXXXXXXXXXXXXXXXXXXXLIWVLTTINYFQFRQKRSLLIALSSFV-----LILIAAKIRQLDVDKIGCDPVSIFQGHSLWHLLSGMSCFLGYAFFR 266
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BLAST of mRNA_P-wetherbeei_contig1909.2.1 vs. uniprot
Match: A0A286IVE9_9BACT (Per1-like n=1 Tax=Cytophagales bacterium TFI 002 TaxID=1945892 RepID=A0A286IVE9_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.410e-10
Identity = 57/235 (24.26%), Postives = 103/235 (43.83%), Query Frame = 1 
Query:  235 SILRCEQDRRGHLIREPSNCTSDLAFLAVALYMLRKAADDRKRKHSVDESPLKARPELSLLCGVSNVLQFLGTSFNHASRTHEGHRCDCTCMYGVVWYFVPYAVVRQRYWKHGGIRRSEMVLFVASLAAGLLLFWPLTSVYYTDPRCELIEALTVASLALLTLALDRRFTRRHRGNIVLRGSLIGAAAGVLIFGAICQKLDIRKVGCNPMSFFQLHGVWHCCSASTLLLVYQYFR 939
            ++  CE +       +  N  S+LA+      +L     D++R  +     L     LS++ G   +    G++F HAS T  G R D    YG+    +  AV+    + H    + +  +    L+ GLL F  + + Y           + V  LA L   L   F  R + +I+L    I  +  +++     +  D++K+GC+P+S+FQ H +WH  +A +  + Y ++R
Sbjct:   43 TVEYCEFNNPKQFFHQSINTYSNLAYFFFGSIILFTGIADKRRMGNF----LSNFSWLSIITGACMIYLSFGSAFFHASLTWIGQRVDMNGTYGIT---IVLAVIG---FVHLFKAQFQSSISQKWLSFGLLAF--ILAFYEIALHVSSGVVVPVLILASLIFMLVEYFKNRSKKSILL----ISLSMIIIVVAVKVRSWDVQKIGCDPLSYFQGHSLWHLLTAMSSFVTYSFYR 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1909.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4Q2UKJ5_9BACT5.270e-1325.94Uncharacterized protein n=3 Tax=Spirosoma TaxID=10... [more]
A0A521GFB2_9BACT7.010e-1224.68Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
A0A286IVE9_9BACT2.410e-1024.26Per1-like n=1 Tax=Cytophagales bacterium TFI 002 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1909contigP-wetherbeei_contig1909:4290..6327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog504472.Slin_4999
PFAMsCeramidase
Model size1371
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.04e-13
EggNOG OGs28K16@1|root,2Z9R0@2|Bacteria,4NGEW@976|Bacteroidetes,47M7P@768503|Cytophagia
DescriptionCeramidase
Cds size741
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1909.2.1prot_P-wetherbeei_contig1909.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1909 4620..6027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.683602-UTR-P-wetherbeei_contig1909:4289..46191683186163.683602-UTR-P-wetherbeei_contig1909:4289..4619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1909 4290..4619 +
1683186163.7360492-UTR-P-wetherbeei_contig1909:6027..63271683186163.7360492-UTR-P-wetherbeei_contig1909:6027..6327Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1909 6028..6327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.6938615-CDS-P-wetherbeei_contig1909:4619..47981683186163.6938615-CDS-P-wetherbeei_contig1909:4619..4798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 4620..4798 +
1683186163.7049084-CDS-P-wetherbeei_contig1909:4930..51211683186163.7049084-CDS-P-wetherbeei_contig1909:4930..5121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 4931..5121 +
1683186163.7180183-CDS-P-wetherbeei_contig1909:5404..55501683186163.7180183-CDS-P-wetherbeei_contig1909:5404..5550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 5405..5550 +
1683186163.7286358-CDS-P-wetherbeei_contig1909:5802..60271683186163.7286358-CDS-P-wetherbeei_contig1909:5802..6027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1909 5803..6027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1909.2.1

>prot_P-wetherbeei_contig1909.2.1 ID=prot_P-wetherbeei_contig1909.2.1|Name=mRNA_P-wetherbeei_contig1909.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
MLRKAADDRKRKHSVDESPLKARPELSLLCGVSNVLQFLGTSFNHASRTH
EGHRCDCTCMYGVVWYFVPYAVVRQRYWKHGGIRRSEMVLFVASLAAGLL
LFWPLTSVYYTDPRCELIEALTVASLALLTLALDRRFTRRHRGNIVLRGS
LIGAAAGVLIFGAICQKLDIRKVGCNPMSFFQLHGVWHCCSASTLLLVYQ
YFRSERRVAPAGAAAAFAAPDSETERLRSGEAAAPASEPESLWVRD*
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mRNA from alignment at P-wetherbeei_contig1909:4290..6327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1909.2.1 ID=mRNA_P-wetherbeei_contig1909.2.1|Name=mRNA_P-wetherbeei_contig1909.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2038bp|location=Sequence derived from alignment at P-wetherbeei_contig1909:4290..6327+ (Phaeothamnion wetherbeei SAG_119_79)
TCACGGTGGCTCTCGTGGGATTGCTGTCATGGATGCTCGGCGATCGCGGC
TTCTGGGCCTCTCTTTCTCCCGATCCGGCACCGTGGTGACGGCGCTACTA
CTTTCTTTTTCCCATTGCGCCTCGTACAAGTTTCAAAAATTCATTCTCTT
CGCAGTTCTCTCTTCAGGCGTGAACGCTTTCTTCATTTTCATGCGCCTGG
TACATGCTTCAAAAAGCCTTCTTTTTGTACGACCTCCATCCTCAGGTGTG
AACAAGATCGCCGTGGGCATTTAATCCGCGAACCTTCCAACTGCACGAGT
GATCTCGCTTTCCTCGCGGTCGCTCTCTACATGCTGCGCAAGGCCGCCGA
CGATCGAAAGAGGAAGCACTCCGTTGACGAATCCCCGCTAAAAGCCCGCC
CGGAGCTGTCACTCCTTTGTGGCGTGTCCAACGTCCTTCAATTCCTCGGA
ACATCCTTCAACCATGCCTCGCGGACGCATGAAGGGCATAGATGCGATTG
CACGTGTATGTGAGTAGCTTGTCTGGCCGGATGGTACCCATCGCCCAACG
CATCGATGACAAGAGAGGAAGGGAAAATTGCATCGTAATTATCGATCCCT
GTTCACTCCATCTTCTTCGCACCCTTTGCAAACGATCCCAGGTACGGGGT
AGTCTGGTACTTCGTCCCTTACGCGGTAGTGCGGCAGCGCTACTGGAAGC
ACGGCGGCATCCGGCGCTCCGAGATGGTGCTGTTCGTGGCTTCGCTCGCC
GCGGGGCTGCTGCTGTTCTGGCCGTTGACGAGCGTTTACTACACGGATCC
CCGCTGCGAGCTGATCGAGGCGCTCACCGTAGGTAAGCAAGGAAAAGGGT
GACGAGAGAATGCATCTTTTCCTTCGGTTTTTGGTCTCCACGGCCTTAAA
TTTGTTTCCAAGCTCTGGCTGCCTGTGCTTAAGAGCGTCCCATCGCAGTG
GTCATTCCCGTCTGTGTTTTTTCCTCTCATGCGCGTAGCTTTTGCGCGTT
GTTCTCTTCTGCCTAGCATCGCTAGTGAAAGTAACGAAACGAACGAATTG
TCGCTCGCGCCGCTCGCCGTCGACCTTACTTCCTCTTCCTGAACGACCTT
TCTTCTTGGCTGCAGCCTCGCTGGCGCTCCTGACGCTGGCCCTCGACCGG
CGCTTCACCCGCCGCCATCGCGGCAATATCGTGCTGCGCGGCAGCCTCAT
CGGTGCGGCGGCGGGGGTACTTATCTTTGGCGCCATATGCCAGAAGCTCG
ACATACGGAAGGTGAGTGCGACGGGATAGCTTTCGTGGTCCGAAATTGGC
GACGCTGCGCGGCCGCGTGGACGGACTGGGTGATTCGAATTTTGTTGTGC
ATCAAATTTTGGGCTCACGGTACGCTCTCTCTTTTTTCCTTCTGCTGTTT
CGTTTCCTTGTCAATTAAGTTCAGTAGCCCTTTCATTTTTGCTCTTCAGA
ATGGGGTTTCCGTTCATTTCCCTCCTCTCCTCTTCTGCTGGCCACCGCCC
TTGCTGCCCTCAGGTTGGCTGCAACCCGATGAGCTTCTTTCAGCTGCACG
GCGTGTGGCACTGCTGCTCCGCCTCCACCCTCCTGCTCGTCTACCAGTAC
TTTCGCAGCGAGCGCCGCGTGGCGCCGGCGGGAGCGGCGGCAGCCTTTGC
GGCGCCCGATTCAGAGACGGAGCGGCTCCGGTCGGGGGAGGCGGCGGCGC
CCGCGTCGGAGCCCGAGAGTCTGTGGGTGCGCGATTGAGGGATTTCGTCT
CGCCGCGCGTCAGTTTCGTGGGGCTATGCTTTGAAAGGGGTTGCTTCGTG
GCATGCACATAAAGAGGTTGGAAGTTTTTAAGGTGTTCTTGGGTTCGGCG
AAGGTATGTATGTGTAGGGACTCGGGAGCAAAGTAGAAATTAGGGAGTCC
ATTGTGGACAGAACCACAGAAACGAAAAGTAGGCAACGCAGAAGCGAATT
GCCCGCCCCACACACCAGAGCATAACAGAAACGCCGTGCACGGCCGAAAG
AACCAGCCAAAATTGCCCTTTTCAACCCTTTCTTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1909:4290..6327+

>mRNA_P-wetherbeei_contig1909.2.1 ID=mRNA_P-wetherbeei_contig1909.2.1|Name=mRNA_P-wetherbeei_contig1909.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig1909:4290..6327+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGCAAGGCCGCCGACGATCGAAAGAGGAAGCACTCCGTTGACGA
ATCCCCGCTAAAAGCCCGCCCGGAGCTGTCACTCCTTTGTGGCGTGTCCA
ACGTCCTTCAATTCCTCGGAACATCCTTCAACCATGCCTCGCGGACGCAT
GAAGGGCATAGATGCGATTGCACGTGTATGTACGGGGTAGTCTGGTACTT
CGTCCCTTACGCGGTAGTGCGGCAGCGCTACTGGAAGCACGGCGGCATCC
GGCGCTCCGAGATGGTGCTGTTCGTGGCTTCGCTCGCCGCGGGGCTGCTG
CTGTTCTGGCCGTTGACGAGCGTTTACTACACGGATCCCCGCTGCGAGCT
GATCGAGGCGCTCACCGTAGCCTCGCTGGCGCTCCTGACGCTGGCCCTCG
ACCGGCGCTTCACCCGCCGCCATCGCGGCAATATCGTGCTGCGCGGCAGC
CTCATCGGTGCGGCGGCGGGGGTACTTATCTTTGGCGCCATATGCCAGAA
GCTCGACATACGGAAGGTTGGCTGCAACCCGATGAGCTTCTTTCAGCTGC
ACGGCGTGTGGCACTGCTGCTCCGCCTCCACCCTCCTGCTCGTCTACCAG
TACTTTCGCAGCGAGCGCCGCGTGGCGCCGGCGGGAGCGGCGGCAGCCTT
TGCGGCGCCCGATTCAGAGACGGAGCGGCTCCGGTCGGGGGAGGCGGCGG
CGCCCGCGTCGGAGCCCGAGAGTCTGTGGGTGCGCGATTGA
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