mRNA_P-wetherbeei_contig19084.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19084.1.1
Unique NamemRNA_P-wetherbeei_contig19084.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A1F4DFH6_9PROT (DNA repair protein RecO n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DFH6_9PROT)

HSP 1 Score: 313 bits (802), Expect = 2.350e-102
Identity = 156/245 (63.67%), Postives = 187/245 (76.33%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A ++R +G+PAFVLHSYPFRETSLII+ FT + GRVALVARGARRP+S LRGVLLAFQPLLLSW G+ ELRTLHKAEWQGG   L G  ++CGFYLNEL+LKLL RDD HE L+  Y  TL AL +G +HA TLR FE+  L+E GY L LD D  SG  I A+  Y Y++DRGPV+   DG   G     +EL+GQTL+D+  D Y++ +TQQQSK LMR LINHCLG+QTL+TRQLL+D+Q L
Sbjct:    5 ADKSRQDGQPAFVLHSYPFRETSLIIQTFTSDLGRVALVARGARRPKSALRGVLLAFQPLLLSWSGRTELRTLHKAEWQGGHAPLKGLAVICGFYLNELLLKLLPRDDPHERLFVVYRETLEALGSGTEHAATLRRFEKSLLQELGYGLMLDRDAESGTPIAAEARYTYVIDRGPVVHHDDGSQNG-----VELSGQTLIDLQSDNYANAVTQQQSKTLMRALINHCLGDQTLHTRQLLRDLQAL 244          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A1F4DHX2_9PROT (DNA repair protein RecO n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DHX2_9PROT)

HSP 1 Score: 309 bits (792), Expect = 6.870e-101
Identity = 154/243 (63.37%), Postives = 185/243 (76.13%), Query Frame = 1
Query:   16 RARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            ++RH+G+PAFVLHSYPFRETSLI+E+FTR+ GRVALVARGARRP+S L GVLLAFQPLLLSW GK +LRTLHKAEW+GG   L G  L+CGFYLNEL+LKLL RDD HE L+  Y  TL AL    DHAVTLR FE+  L+E GY L LD D  +G  IRA+ +Y Y+++RGPV+   D    G     +EL GQTL+DM  D+Y+S  + QQSK LMR LINH LGN+TL+TRQLL+D+Q L
Sbjct:    4 KSRHDGQPAFVLHSYPFRETSLIVESFTRDRGRVALVARGARRPKSTLHGVLLAFQPLLLSWSGKMDLRTLHKAEWEGGYTPLKGLSLICGFYLNELLLKLLPRDDPHEQLFAVYRETLEALGRNDDHAVTLRRFEKNLLRELGYGLMLDRDAETGAPIRAELSYTYVMERGPVVQRGDAARNG-----VELTGQTLIDMQSDDYASAASLQQSKLLMRALINHHLGNKTLHTRQLLRDLQAL 241          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A4R3YDM8_9PROT (DNA repair protein RecO n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YDM8_9PROT)

HSP 1 Score: 304 bits (778), Expect = 9.930e-99
Identity = 154/247 (62.35%), Postives = 190/247 (76.92%), Query Frame = 1
Query:    1 MADAGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQ 741
            M +  +++ E +PA+VLHSYPFRETSLI+E F+RN+GR+A+VARGARRP+S +RG+L+AFQPL L+W GKAEL+TLH AEWQGG PQL G  LLCGFYLNELMLKLL RDD HE L+  Y  TL +L++  D+A  LR FE + L+E GYALT  +DV SGE+I  D  YHY ++ GPV+A  +G      G  ++L+G+TLLDMA D Y  PLT QQSK LMR LINH LG+QTL+TRQLLKDMQQ
Sbjct:    1 MGNTQKSQQEAQPAYVLHSYPFRETSLIVEVFSRNFGRLAIVARGARRPKSAVRGLLMAFQPLQLNWFGKAELKTLHSAEWQGGQPQLQGMALLCGFYLNELMLKLLHRDDPHENLFMYYQETLQSLASQRDYAAVLRRFEIRLLQELGYALTFVNDVSSGESIVPDREYHYQIEYGPVVA--EGRNSHQIG--VQLSGKTLLDMAADNYRDPLTLQQSKTLMRTLINHYLGDQTLHTRQLLKDMQQ 243          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A3N5WRZ8_9PROT (DNA repair protein RecO n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WRZ8_9PROT)

HSP 1 Score: 300 bits (769), Expect = 2.050e-97
Identity = 153/248 (61.69%), Postives = 182/248 (73.39%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPV---LAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A RAR +G+PA++LH+YP+RETSL+ E +TR+ GRVAL+ARGARRPRS LRGVL+AFQPLLL W GKAEL+TLHKAEWQGG   L G  L+CGFYLNEL+LKLL R+D HE L+E Y   L  L +  DHA  LR FE+  L+E GY L LD +V+ G  I     Y Y+ +RGPV   LAA   G        +ELAGQTL+DMA D Y+ P T QQSKALMR LINHCLG QTL+TRQLL+D+QQL
Sbjct:    2 AERARRDGQPAYLLHTYPYRETSLVAEIYTRDAGRVALIARGARRPRSALRGVLMAFQPLLLGWSGKAELKTLHKAEWQGGYLPLRGLSLICGFYLNELLLKLLPREDPHERLFEAYADALAQLPHAQDHAAVLRRFERVLLRELGYGLVLDREVVGGTPIEPATRYCYVPERGPVPAGLAAAQSG--------VELAGQTLIDMAVDHYADPQTVQQSKALMRALINHCLGRQTLHTRQLLRDLQQL 241          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A0S8CAS3_9PROT (DNA repair protein RecO n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8CAS3_9PROT)

HSP 1 Score: 296 bits (758), Expect = 1.010e-95
Identity = 148/248 (59.68%), Postives = 183/248 (73.79%), Query Frame = 1
Query:    1 MADAGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            M+  G+ R + +P FVLHSYPFRETSL++E FTR++GR+ALVARGARRPRS LRGVLL+FQPLLLSW G++ELRTL +AEWQG    L G  L+CGFYLNEL+LKLL RDD HE L+  Y ATL AL+   +H   LR FE Q L+E GYA+ LD D  +G+ I  D  Y Y+++RGPV A         +GK +ELAGQTLLDM   ++ S +TQQQSKALMR LINH LG Q L+TRQ+L+++Q L
Sbjct:    1 MSTRGQVRQDAQPGFVLHSYPFRETSLVVETFTRDHGRIALVARGARRPRSSLRGVLLSFQPLLLSWTGRSELRTLTRAEWQGAYTALRGETLMCGFYLNELLLKLLPRDDPHERLHGIYQATLAALAADAEHESILRRFELQLLRELGYAVMLDRDAETGDVIHPDQRYVYVVERGPVAAETSA-----SGKGVELAGQTLLDMQSSKFDSAVTQQQSKALMRALINHYLGKQVLHTRQMLRELQDL 243          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A7V8ZNQ2_9BURK (DNA repair protein RecO n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZNQ2_9BURK)

HSP 1 Score: 295 bits (756), Expect = 3.350e-95
Identity = 152/256 (59.38%), Postives = 187/256 (73.05%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDG-----------GGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A +AR + + AFVLH+YPFRETSL+IE F R+ GRVALVARGARRP+S LRG LLAFQPL LSW GK ELRTLH+AEW GGLP L G  L+CGFYLNEL+LKLLARDD H  L+++Y+A L  L+  G+ A  LR FE++FL+E GYALTL  D  +G TI AD  Y Y+++RG +  A  G           G GG     +E++G+TLLDMARD+YS   T QQSK LMR +I+H LG Q+LNTRQL+KD++QL
Sbjct:    3 ADKARQDAQTAFVLHTYPFRETSLVIEIFARDAGRVALVARGARRPKSALRGALLAFQPLALSWFGKNELRTLHRAEWLGGLPMLHGEALICGFYLNELLLKLLARDDPHPLLFDSYHAALQELAGAGEVAPILRRFEKRFLQELGYALTLTRDARNGATIEADRQYAYVMERGALPVAPAGVREKKVESVGPGTGGGKPPLVEISGKTLLDMARDDYSDATTLQQSKLLMRAIIDHYLGAQSLNTRQLMKDLRQL 258          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: UPI001BBF2BE0 (DNA repair protein RecO n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BBF2BE0)

HSP 1 Score: 294 bits (753), Expect = 5.160e-95
Identity = 148/244 (60.66%), Postives = 180/244 (73.77%), Query Frame = 1
Query:   16 RARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAA--RDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQ 741
            ++R E +P FVLH+YPFRETSL++E F+ N+GR+ALVARGARRPRS +RG+LLAFQPL L+W GK+ELRTLH AEWQGG P L G  L+CGFYLNEL+LKLL RDD HE L+  Y  TL  L+   DHA  LR FE + LKE GYALTLDH+V SG  + A+  Y Y  DRGP+L A  RDG         ++L G+TLLDMA D+Y  P TQQQSK LMR L+NH LG Q L+TRQ+LK++ +
Sbjct:    5 KSRQENQPVFVLHTYPFRETSLVVEVFSLNFGRLALVARGARRPRSAVRGLLLAFQPLSLAWFGKSELRTLHAAEWQGGQPLLQGNALICGFYLNELLLKLLPRDDPHEQLFLYYRDTLLELARDPDHAAVLRRFETRLLKELGYALTLDHEVESGTPLEAEQTYTYAFDRGPLLRAAPRDG---------VQLRGKTLLDMAADDYRDPATQQQSKMLMRALLNHYLGEQILHTRQMLKELAE 239          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A4V0X9K8_9PROT (DNA repair protein RecO n=1 Tax=Nitrosomonadaceae bacterium TaxID=2026767 RepID=A0A4V0X9K8_9PROT)

HSP 1 Score: 294 bits (753), Expect = 5.530e-95
Identity = 143/245 (58.37%), Postives = 185/245 (75.51%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A + R + EPAFVLH+YP+ ETSL++E FTRN+GR+ ++A+GA+RPRS LRG+LLAFQPL LSW GK+ELRTLHK EWQGG P L G  L+CGFYLNEL+++LL R+D HE L+E Y  TL ALS+  D+   LR FEQ+ LKE GYALTL +DV + + + A   Y Y ++RGP +      G GD  + L+L+G+TLLDM   +YS  +T+QQSKALMR ++NH LG+Q L+TRQLLKD+QQL
Sbjct:    3 ANKYRQDTEPAFVLHAYPYLETSLVVETFTRNFGRIPMIAKGAKRPRSALRGLLLAFQPLHLSWAGKSELRTLHKVEWQGGQPSLQGMALICGFYLNELLVRLLRREDPHEQLFEYYQETLIALSSQQDYTPILRHFEQRMLKELGYALTLSYDVTTNKPLNAQEKYCYEIERGPKIL-----GAGDCSRGLQLSGRTLLDMETGDYSDSITRQQSKALMRYILNHYLGDQPLHTRQLLKDLQQL 242          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: UPI0019ADB0ED (DNA repair protein RecO n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019ADB0ED)

HSP 1 Score: 294 bits (752), Expect = 1.490e-94
Identity = 154/259 (59.46%), Postives = 186/259 (71.81%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGG------------GGGDAGKRL--ELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A RAR + + AFVLHSYPFRETSL+ E F R+ GR+ALVARGARRP+S LRG LLAFQPL LSW GK ELRTLH+AEW GGLP L G  L+CGFYLNEL+LKLLARDD H  L++TY   L  L+  G++A  LR FE++ L+E GYALTL HD  +G  I AD  Y Y+++RG +  A D G            GG   GK L  E++G+TLLDMA D+YS  LT QQSK LMR +I+H LG Q+LNTRQL+KD++QL
Sbjct:    3 ADRARQDAQTAFVLHSYPFRETSLVAEIFARDAGRIALVARGARRPKSALRGSLLAFQPLALSWFGKNELRTLHRAEWLGGLPMLHGEALICGFYLNELLLKLLARDDPHPLLFDTYRDALQELAGAGEYAPILRRFEKRLLQELGYALTLTHDARNGAEIEADRQYTYVMERGAMPVAPDDGKEKKVESGGLELGGKAGGKPLLVEVSGKTLLDMAHDDYSDELTLQQSKLLMRAIIDHYLGAQSLNTRQLMKDLRQL 261          
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Match: A0A1G4XJR5_9PROT (DNA repair protein RecO n=5 Tax=Nitrosospira TaxID=35798 RepID=A0A1G4XJR5_9PROT)

HSP 1 Score: 291 bits (745), Expect = 8.910e-94
Identity = 146/245 (59.59%), Postives = 184/245 (75.10%), Query Frame = 1
Query:   10 AGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPRSVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLNELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGYALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQTLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL 744
            A + R + +PAFVLH+YP+ ETSL++EAFTRN+GRV LVA+GA+RP+S  RG+L AFQPL LSWGGK ELRTLHKAEWQ G   L G GL+CGFYLNEL+++LL R+D HE L+  Y   L ALSNG D+   LR FEQ+ L+E GYALTLDHD  SG  I A+ +Y Y ++RGPV +      G    + L+L G+TLLDM R +YS  LT+QQSKALMR ++NH LG++ L+TRQLLK++QQL
Sbjct:    3 ADKQRQDAQPAFVLHTYPYLETSLVVEAFTRNFGRVPLVAKGAKRPKSAFRGLLRAFQPLQLSWGGKTELRTLHKAEWQAGQMPLQGTGLICGFYLNELLVRLLHRNDPHEQLFIYYQEALSALSNGKDYIPILRRFEQRLLQELGYALTLDHDAASGNPIDANEDYCYEIERGPVPS-----NGHRCDQGLQLGGKTLLDMERGDYSDTLTRQQSKALMRYILNHYLGDKPLHTRQLLKNLQQL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19084.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DFH6_9PROT2.350e-10263.67DNA repair protein RecO n=1 Tax=Betaproteobacteria... [more]
A0A1F4DHX2_9PROT6.870e-10163.37DNA repair protein RecO n=1 Tax=Betaproteobacteria... [more]
A0A4R3YDM8_9PROT9.930e-9962.35DNA repair protein RecO n=1 Tax=Sulfurirhabdus aut... [more]
A0A3N5WRZ8_9PROT2.050e-9761.69DNA repair protein RecO n=1 Tax=Betaproteobacteria... [more]
A0A0S8CAS3_9PROT1.010e-9559.68DNA repair protein RecO n=1 Tax=Betaproteobacteria... [more]
A0A7V8ZNQ2_9BURK3.350e-9559.38DNA repair protein RecO n=1 Tax=Burkholderiales ba... [more]
UPI001BBF2BE05.160e-9560.66DNA repair protein RecO n=1 Tax=Sulfuricella sp. T... [more]
A0A4V0X9K8_9PROT5.530e-9558.37DNA repair protein RecO n=1 Tax=Nitrosomonadaceae ... [more]
UPI0019ADB0ED1.490e-9459.46DNA repair protein RecO n=1 Tax=Burkholderiales ba... [more]
A0A1G4XJR5_9PROT8.910e-9459.59DNA repair protein RecO n=5 Tax=Nitrosospira TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19084contigP-wetherbeei_contig19084:17..1308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1266925.JHVX01000002_gene1090
Preferred namerecO
PFAMsRecO_C,RecO_N
Model size1292
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03584
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-98
EggNOG OGsCOG1381@1|root,COG1381@2|Bacteria,1RHIC@1224|Proteobacteria,2VJUC@28216|Betaproteobacteria,372H0@32003|Nitrosomonadales
DescriptionInvolved in DNA repair and RecF pathway recombination
Cds size747
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.5195177-CDS-P-wetherbeei_contig19084:16..7631683186163.5195177-CDS-P-wetherbeei_contig19084:16..763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19084 17..763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.5304756-UTR-P-wetherbeei_contig19084:763..13081683186163.5304756-UTR-P-wetherbeei_contig19084:763..1308Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19084 764..1308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19084.1.1prot_P-wetherbeei_contig19084.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19084 17..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19084.1.1

>prot_P-wetherbeei_contig19084.1.1 ID=prot_P-wetherbeei_contig19084.1.1|Name=mRNA_P-wetherbeei_contig19084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=249bp
MADAGRARHEGEPAFVLHSYPFRETSLIIEAFTRNYGRVALVARGARRPR
SVLRGVLLAFQPLLLSWGGKAELRTLHKAEWQGGLPQLTGRGLLCGFYLN
ELMLKLLARDDAHETLYETYYATLGALSNGGDHAVTLRSFEQQFLKEAGY
ALTLDHDVMSGETIRADCNYHYLLDRGPVLAARDGGGGGDAGKRLELAGQ
TLLDMARDEYSSPLTQQQSKALMRMLINHCLGNQTLNTRQLLKDMQQL*
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mRNA from alignment at P-wetherbeei_contig19084:17..1308+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19084.1.1 ID=mRNA_P-wetherbeei_contig19084.1.1|Name=mRNA_P-wetherbeei_contig19084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1292bp|location=Sequence derived from alignment at P-wetherbeei_contig19084:17..1308+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATGCAGGCAGGGCGCGTCACGAAGGAGAGCCCGCTTTCGTGCT GCATAGCTACCCGTTTCGCGAGACCAGTCTGATCATCGAGGCGTTCACGC GCAATTACGGCCGCGTGGCGCTGGTCGCGCGCGGCGCGCGGCGGCCCCGT TCGGTATTGCGAGGGGTGTTGCTGGCGTTTCAGCCTTTGTTGTTGAGCTG GGGCGGCAAGGCCGAGCTGCGCACATTGCACAAAGCCGAATGGCAGGGCG GACTGCCGCAACTGACGGGCCGCGGCCTGCTGTGCGGTTTCTACCTGAAC GAGCTGATGCTGAAGCTGCTGGCGCGCGACGATGCGCATGAAACCCTCTA TGAGACCTACTATGCGACGCTTGGCGCGTTGAGCAACGGCGGCGACCACG CCGTGACGCTGCGCAGCTTCGAGCAGCAGTTTCTGAAAGAGGCCGGCTAC GCGCTGACGCTGGACCACGACGTGATGAGCGGCGAGACGATCCGCGCGGA CTGCAATTATCATTACCTGCTCGATCGCGGGCCCGTACTCGCCGCGCGCG ATGGCGGCGGGGGCGGCGACGCTGGAAAACGGTTAGAATTGGCGGGACAA ACCCTGCTCGATATGGCGCGCGACGAGTATTCGAGTCCGCTTACCCAGCA GCAAAGCAAGGCATTGATGCGCATGCTGATCAATCACTGTCTTGGCAACC AGACGCTGAATACCCGGCAGTTATTGAAGGATATGCAACAGCTATGACGC GCCTGAGCGTCAACCTCAACAAGATAGCGCTGCTGCGCAACGCGCGCACG CTCGGCATTCCGAGCGTGACGCGCGCGGCGACGATTGCGCTCGACGCCGG CGCCCACGGCATCACGGTCCATCCGCGTCCCGATGCGCGGCATATCCGCA TCGATGATGTGCGTGAGCTGTCGGCCCTGCTCAAGCAGCGCGCGGACGCT GAATTCAACATCGAAGGCAATCCTTTCGAGGGTTTGATCGAGATCGCGCG CGAAGTCCGCCCCCAGCAGTGCACGCTGGTGCCGGATGAGCCCGGCGCGG TGACTTCGGACCATGGCTGGGATATCGGGCGCGATGGCAGGCGTCTAAAG CCGCTGATCGCAGAGCTCAAGGCGCTGGGAATGCGCGTCAGCCTTTTCAT GGATCCGCTGCCGGAGGCGATGGCGGCAGTGCGCGACCTCGGCGCCGACC GCATCGAACTTTATACCGAGCCGTACGCGCAGGCGTATGGCAGCGCCGGC GAGCAGGCGGCGGTAATGAACTATGCCCTCGCCGCCGAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19084:17..1308+

>mRNA_P-wetherbeei_contig19084.1.1 ID=mRNA_P-wetherbeei_contig19084.1.1|Name=mRNA_P-wetherbeei_contig19084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig19084:17..1308+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATGCAGGCAGGGCGCGTCACGAAGGAGAGCCCGCTTTCGTGCT
GCATAGCTACCCGTTTCGCGAGACCAGTCTGATCATCGAGGCGTTCACGC
GCAATTACGGCCGCGTGGCGCTGGTCGCGCGCGGCGCGCGGCGGCCCCGT
TCGGTATTGCGAGGGGTGTTGCTGGCGTTTCAGCCTTTGTTGTTGAGCTG
GGGCGGCAAGGCCGAGCTGCGCACATTGCACAAAGCCGAATGGCAGGGCG
GACTGCCGCAACTGACGGGCCGCGGCCTGCTGTGCGGTTTCTACCTGAAC
GAGCTGATGCTGAAGCTGCTGGCGCGCGACGATGCGCATGAAACCCTCTA
TGAGACCTACTATGCGACGCTTGGCGCGTTGAGCAACGGCGGCGACCACG
CCGTGACGCTGCGCAGCTTCGAGCAGCAGTTTCTGAAAGAGGCCGGCTAC
GCGCTGACGCTGGACCACGACGTGATGAGCGGCGAGACGATCCGCGCGGA
CTGCAATTATCATTACCTGCTCGATCGCGGGCCCGTACTCGCCGCGCGCG
ATGGCGGCGGGGGCGGCGACGCTGGAAAACGGTTAGAATTGGCGGGACAA
ACCCTGCTCGATATGGCGCGCGACGAGTATTCGAGTCCGCTTACCCAGCA
GCAAAGCAAGGCATTGATGCGCATGCTGATCAATCACTGTCTTGGCAACC
AGACGCTGAATACCCGGCAGTTATTGAAGGATATGCAACAGCTATGA
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