mRNA_P-wetherbeei_contig19038.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19038.1.1
Unique NamemRNA_P-wetherbeei_contig19038.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19038.1.1 vs. uniprot
Match: A0A7Y3H0M9_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3H0M9_9DELT)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-15
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 DHGPYITITGNRRLNFNIDTIVEELGRPYTVPTLLVVLSSYTGQVDVADRCVSIK 165
            DHG YI +     L F +D + EELGRPY VPT LVVLSSYTGQVDV DR V+I+
Sbjct:   39 DHGSYIDLAAETELVFEMDRVSEELGRPYDVPTFLVVLSSYTGQVDVQDRRVTIR 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y3H0M9_9DELT1.560e-1563.64Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19038contigP-wetherbeei_contig19038:3..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.2051654-CDS-P-wetherbeei_contig19038:2..1851683186162.2051654-CDS-P-wetherbeei_contig19038:2..185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19038 3..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19038.1.1prot_P-wetherbeei_contig19038.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19038 3..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19038.1.1

>prot_P-wetherbeei_contig19038.1.1 ID=prot_P-wetherbeei_contig19038.1.1|Name=mRNA_P-wetherbeei_contig19038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
DHGPYITITGNRRLNFNIDTIVEELGRPYTVPTLLVVLSSYTGQVDVADR
CVSIKEALAD*
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mRNA from alignment at P-wetherbeei_contig19038:3..185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19038.1.1 ID=mRNA_P-wetherbeei_contig19038.1.1|Name=mRNA_P-wetherbeei_contig19038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig19038:3..185+ (Phaeothamnion wetherbeei SAG_119_79)
GACCACGGTCCCTACATCACGATCACGGGCAACCGACGCTTGAATTTCAA
CATCGACACCATCGTCGAAGAATTGGGGCGGCCCTACACCGTCCCGACGC
TGCTTGTGGTGCTCTCGAGCTACACGGGACAGGTCGACGTCGCAGACCGC
TGTGTTTCCATTAAAGAAGCTCTTGCCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19038:3..185+

>mRNA_P-wetherbeei_contig19038.1.1 ID=mRNA_P-wetherbeei_contig19038.1.1|Name=mRNA_P-wetherbeei_contig19038.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig19038:3..185+ (Phaeothamnion wetherbeei SAG_119_79)
GACCACGGTCCCTACATCACGATCACGGGCAACCGACGCTTGAATTTCAA
CATCGACACCATCGTCGAAGAATTGGGGCGGCCCTACACCGTCCCGACGC
TGCTTGTGGTGCTCTCGAGCTACACGGGACAGGTCGACGTCGCAGACCGC
TGTGTTTCCATTAAAGAAGCTCTTGCCGACTGA
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