mRNA_P-wetherbeei_contig1903.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1903.1.1
Unique NamemRNA_P-wetherbeei_contig1903.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1903.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1903contigP-wetherbeei_contig1903:3642..6458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2187
Hectar predicted targeting categorymitochondrion
Exons4
Cds size2184
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.0544677-CDS-P-wetherbeei_contig1903:3641..50871683186162.0544677-CDS-P-wetherbeei_contig1903:3641..5087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1903 3642..5087 +
1683186162.071087-CDS-P-wetherbeei_contig1903:5329..58771683186162.071087-CDS-P-wetherbeei_contig1903:5329..5877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1903 5330..5877 +
1683186162.0824115-CDS-P-wetherbeei_contig1903:6035..61861683186162.0824115-CDS-P-wetherbeei_contig1903:6035..6186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1903 6036..6186 +
1683186162.0928743-CDS-P-wetherbeei_contig1903:6418..64571683186162.0928743-CDS-P-wetherbeei_contig1903:6418..6457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1903 6419..6457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1903.1.1prot_P-wetherbeei_contig1903.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1903 3642..6457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1903.1.1

>prot_P-wetherbeei_contig1903.1.1 ID=prot_P-wetherbeei_contig1903.1.1|Name=mRNA_P-wetherbeei_contig1903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=728bp
PRPRRASRGRKAVPQFRLFLNTVLYSTSRCLLPPPWPPSHPHLPEQLASP
KLTSKAAAITSNFPLYRFPPQPENLPSHSGGRMDSDGDDDVVRFGIPVLI
ALFDSGGDLPPFQHGLGATGRGTARLIAEDAWEPCTFQNAAAECVGNALL
LVGGTGAVTLHSGGLTLCAAPRGSALLWIPASECDDTLITEFRLKGISDA
SKTLAVGGVFSLRLAGGTGAAICTRRAEGSEELELFVDGGIGGSVAWFNI
DGIVDASLSFGDAVTKAEAALAPLEAEPEAADGAAVAVAVVASTQPPSSA
AGPAKGLSPPQWLRRGRSPPKTDAAATAPAIAATAAVTAAAPAVAAIAKE
ADKGAPPPPPPPAMPSPAAMCERGRGTVSEFSCEFGDGPLGVTLRLGAGG
GVEFFGIHEGGQGARAGIVDDDLLLQIGDAFIGAEQPLSEGEWQGLIARI
REGERPLAMRVGRRRGGGTGGADDTGTAAGKQISSAVSVGAAVAAPAKTP
ASAVPSLPPPPPVTRAASVGSSTSGRDRGPVLKQGPVKVVRAGALWNNVS
PRQLFLYQEELMLRPPPPGGSAGGGNGGAFGTGGFAACVSSLDDGSDDGD
SSGGGGRAGNGGGSGGGGVGALLASVDEGDTAVPLATAKVRLPRPGASAA
LSPRRRSAAPEEQYSFELLSPFGSLLLCFPTAEAKAAWVAALGEAIMTAL
QGHMAGPMALGSRHQVVLGTLHSAVVCG
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mRNA from alignment at P-wetherbeei_contig1903:3642..6458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1903.1.1 ID=mRNA_P-wetherbeei_contig1903.1.1|Name=mRNA_P-wetherbeei_contig1903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2817bp|location=Sequence derived from alignment at P-wetherbeei_contig1903:3642..6458+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGACCACGGCGCGCTTCACGAGGCCGAAAAGCTGTCCCCCAGTTTCG
CCTCTTCTTAAACACTGTGCTGTACAGCACGTCAAGGTGCTTACTGCCTC
CTCCTTGGCCGCCGTCACATCCTCACCTGCCAGAACAACTAGCGTCACCG
AAACTAACGTCCAAGGCCGCTGCCATAACCAGTAACTTTCCCCTGTACCG
CTTCCCCCCCCAACCCGAAAATCTTCCCTCTCACAGCGGCGGCAGGATGG
ATAGCGATGGTGATGATGACGTTGTGCGGTTTGGGATCCCAGTCTTGATT
GCGCTCTTCGACTCCGGCGGAGATTTGCCTCCCTTTCAGCATGGGCTCGG
AGCCACGGGCCGTGGGACAGCTCGCCTCATCGCAGAAGACGCTTGGGAAC
CTTGTACCTTTCAGAATGCGGCGGCGGAATGTGTTGGCAACGCGCTGCTG
CTTGTGGGTGGTACTGGCGCCGTGACTCTGCACAGTGGGGGTCTAACCCT
CTGTGCCGCGCCAAGAGGCAGTGCGCTGTTGTGGATACCGGCCTCCGAGT
GCGACGATACGCTGATCACGGAATTCCGGCTCAAGGGCATCAGTGACGCA
AGCAAAACGCTGGCTGTCGGGGGCGTATTCAGCCTGCGCTTGGCTGGCGG
GACTGGCGCTGCGATTTGCACGCGCCGCGCCGAGGGATCCGAGGAGCTTG
AACTATTCGTCGATGGCGGCATCGGAGGCAGCGTGGCGTGGTTCAACATC
GACGGCATCGTAGATGCCTCGCTCTCGTTTGGAGACGCGGTCACCAAGGC
TGAAGCCGCGCTGGCGCCGCTGGAAGCAGAGCCCGAGGCGGCAGACGGCG
CAGCAGTTGCTGTAGCTGTCGTTGCCTCCACGCAGCCGCCATCATCGGCA
GCAGGCCCCGCAAAGGGACTCAGCCCCCCCCAGTGGCTGCGCCGCGGCCG
CTCGCCTCCCAAGACCGATGCTGCTGCCACCGCTCCTGCCATAGCCGCCA
CCGCCGCTGTCACCGCCGCCGCTCCTGCTGTGGCCGCTATCGCAAAAGAG
GCCGACAAAGGTGCTCCACCGCCGCCCCCGCCACCAGCGATGCCGTCTCC
GGCGGCGATGTGCGAGCGCGGCCGCGGCACGGTAAGCGAGTTCTCCTGCG
AGTTCGGCGACGGGCCGCTGGGCGTTACACTGCGTCTCGGCGCCGGCGGC
GGCGTCGAGTTTTTTGGCATCCACGAAGGGGGGCAGGGCGCTCGCGCCGG
CATCGTCGACGACGACCTGCTGCTGCAGATCGGGGACGCTTTCATCGGGG
CGGAGCAGCCGCTGAGCGAAGGGGAGTGGCAAGGGCTCATCGCACGCATC
CGTGAGGGGGAGCGGCCGTTAGCGATGCGGGTGGGGCGGCGGCGCGGCGG
CGGAACGGGCGGCGCTGACGACACTGGGACTGCTGCCGGCAAGCAGGTGC
GACTGGTTGAGGCTGTTTCGGTGCGTCTGAAGCCCAATGTCTCCTCCAGG
GTTTCTTTTTTGTTCTTTTTGCTTGCCTGAGTTTCAGCCCCGCGCATTCA
ATTGTCATTCAGTGCGTTGGTGTCCTCAATCTCGGCTTTTACACCTTCAG
CCGTCAATTCCAAGTCTCGGCCTTTATATTTTCAGCCTTCAATTCCAATT
CCTCAATCGCACAATTTGCAACGTATATTCGTTCGCAGATCAGCTCTGCG
GTTTCCGTTGGAGCTGCTGTAGCTGCGCCGGCGAAGACGCCGGCATCAGC
AGTGCCTTCGTTGCCGCCGCCGCCGCCGGTCACCAGGGCAGCCTCGGTGG
GCAGCTCCACCAGCGGGCGGGACCGCGGGCCGGTGCTGAAACAGGGCCCC
GTGAAAGTCGTCCGGGCCGGGGCGCTCTGGAATAATGTGTCCCCGCGGCA
GCTCTTTTTGTACCAGGAGGAGCTCATGCTGCGGCCGCCGCCGCCCGGCG
GGTCCGCCGGCGGCGGGAACGGCGGCGCATTCGGCACCGGCGGGTTCGCC
GCTTGCGTCAGCAGCTTGGACGATGGCAGCGATGACGGCGACAGCAGCGG
CGGTGGCGGTAGGGCCGGCAATGGCGGCGGTAGCGGCGGCGGCGGGGTCG
GAGCCTTGCTGGCGTCGGTGGACGAAGGGGACACGGCGGTGCCGCTCGCG
ACGGCGAAGGTGCGGCTGCCGCGGCCGGGGGCGTCGGCGGCGCTCAGCCC
GCGCAGGCGCAGCGCAGCTCCTGAGGAGCAATACAGGTGCGGGGACGCTT
GTCCTTGCCAGCTAATCTACCAGTTGAAAGACTTGGCCGTCATGGTCTGT
TGTTTGCTTGTCTGATAATATCTGCCCCGATCTGCTGCACCACCGCATCC
CTCTTTACTTTCTTAAACATCTCCTTACTATGCCATACTTGCAGTTTTGA
GCTGCTGTCGCCGTTCGGGAGCCTCCTATTGTGCTTCCCGACGGCGGAGG
CCAAGGCGGCGTGGGTGGCGGCGCTGGGGGAGGCGATTATGACCGCGCTC
CAAGGGCACATGGCTGGCCCGATGGCACTGGGCTCCCGCCACCAGGTCCG
TTACGCTCGTCTTCTTTTTTTGGTCCTTCATGGTTCGGTGCTTTGTCTGA
TTGGTCATGAAAACGGGAAATGTCCCCTCTTTGCAAGGTTGCTGGGCGAA
TTTCCGCCGAGACACTTTTGGATCTGAGGGGTTGCCGTAAGCGTATTCTC
ACCGTGTTTCTGCTTTCATGGCGGACCCTTCTTTCTTTCCCGGCGTTGGT
GATGGCTGGGCCGCTGGACCGCTGCAGGTGGTGCTGGGCACGCTGCACAG
CGCCGTCGTATGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1903:3642..6458+

>mRNA_P-wetherbeei_contig1903.1.1 ID=mRNA_P-wetherbeei_contig1903.1.1|Name=mRNA_P-wetherbeei_contig1903.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2184bp|location=Sequence derived from alignment at P-wetherbeei_contig1903:3642..6458+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGACCACGGCGCGCTTCACGAGGCCGAAAAGCTGTCCCCCAGTTTCG
CCTCTTCTTAAACACTGTGCTGTACAGCACGTCAAGGTGCTTACTGCCTC
CTCCTTGGCCGCCGTCACATCCTCACCTGCCAGAACAACTAGCGTCACCG
AAACTAACGTCCAAGGCCGCTGCCATAACCAGTAACTTTCCCCTGTACCG
CTTCCCCCCCCAACCCGAAAATCTTCCCTCTCACAGCGGCGGCAGGATGG
ATAGCGATGGTGATGATGACGTTGTGCGGTTTGGGATCCCAGTCTTGATT
GCGCTCTTCGACTCCGGCGGAGATTTGCCTCCCTTTCAGCATGGGCTCGG
AGCCACGGGCCGTGGGACAGCTCGCCTCATCGCAGAAGACGCTTGGGAAC
CTTGTACCTTTCAGAATGCGGCGGCGGAATGTGTTGGCAACGCGCTGCTG
CTTGTGGGTGGTACTGGCGCCGTGACTCTGCACAGTGGGGGTCTAACCCT
CTGTGCCGCGCCAAGAGGCAGTGCGCTGTTGTGGATACCGGCCTCCGAGT
GCGACGATACGCTGATCACGGAATTCCGGCTCAAGGGCATCAGTGACGCA
AGCAAAACGCTGGCTGTCGGGGGCGTATTCAGCCTGCGCTTGGCTGGCGG
GACTGGCGCTGCGATTTGCACGCGCCGCGCCGAGGGATCCGAGGAGCTTG
AACTATTCGTCGATGGCGGCATCGGAGGCAGCGTGGCGTGGTTCAACATC
GACGGCATCGTAGATGCCTCGCTCTCGTTTGGAGACGCGGTCACCAAGGC
TGAAGCCGCGCTGGCGCCGCTGGAAGCAGAGCCCGAGGCGGCAGACGGCG
CAGCAGTTGCTGTAGCTGTCGTTGCCTCCACGCAGCCGCCATCATCGGCA
GCAGGCCCCGCAAAGGGACTCAGCCCCCCCCAGTGGCTGCGCCGCGGCCG
CTCGCCTCCCAAGACCGATGCTGCTGCCACCGCTCCTGCCATAGCCGCCA
CCGCCGCTGTCACCGCCGCCGCTCCTGCTGTGGCCGCTATCGCAAAAGAG
GCCGACAAAGGTGCTCCACCGCCGCCCCCGCCACCAGCGATGCCGTCTCC
GGCGGCGATGTGCGAGCGCGGCCGCGGCACGGTAAGCGAGTTCTCCTGCG
AGTTCGGCGACGGGCCGCTGGGCGTTACACTGCGTCTCGGCGCCGGCGGC
GGCGTCGAGTTTTTTGGCATCCACGAAGGGGGGCAGGGCGCTCGCGCCGG
CATCGTCGACGACGACCTGCTGCTGCAGATCGGGGACGCTTTCATCGGGG
CGGAGCAGCCGCTGAGCGAAGGGGAGTGGCAAGGGCTCATCGCACGCATC
CGTGAGGGGGAGCGGCCGTTAGCGATGCGGGTGGGGCGGCGGCGCGGCGG
CGGAACGGGCGGCGCTGACGACACTGGGACTGCTGCCGGCAAGCAGATCA
GCTCTGCGGTTTCCGTTGGAGCTGCTGTAGCTGCGCCGGCGAAGACGCCG
GCATCAGCAGTGCCTTCGTTGCCGCCGCCGCCGCCGGTCACCAGGGCAGC
CTCGGTGGGCAGCTCCACCAGCGGGCGGGACCGCGGGCCGGTGCTGAAAC
AGGGCCCCGTGAAAGTCGTCCGGGCCGGGGCGCTCTGGAATAATGTGTCC
CCGCGGCAGCTCTTTTTGTACCAGGAGGAGCTCATGCTGCGGCCGCCGCC
GCCCGGCGGGTCCGCCGGCGGCGGGAACGGCGGCGCATTCGGCACCGGCG
GGTTCGCCGCTTGCGTCAGCAGCTTGGACGATGGCAGCGATGACGGCGAC
AGCAGCGGCGGTGGCGGTAGGGCCGGCAATGGCGGCGGTAGCGGCGGCGG
CGGGGTCGGAGCCTTGCTGGCGTCGGTGGACGAAGGGGACACGGCGGTGC
CGCTCGCGACGGCGAAGGTGCGGCTGCCGCGGCCGGGGGCGTCGGCGGCG
CTCAGCCCGCGCAGGCGCAGCGCAGCTCCTGAGGAGCAATACAGTTTTGA
GCTGCTGTCGCCGTTCGGGAGCCTCCTATTGTGCTTCCCGACGGCGGAGG
CCAAGGCGGCGTGGGTGGCGGCGCTGGGGGAGGCGATTATGACCGCGCTC
CAAGGGCACATGGCTGGCCCGATGGCACTGGGCTCCCGCCACCAGGTGGT
GCTGGGCACGCTGCACAGCGCCGTCGTATGCGGC
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