mRNA_P-wetherbeei_contig18990.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18990.1.1
Unique NamemRNA_P-wetherbeei_contig18990.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18990.1.1 vs. uniprot
Match: A6C7Y6_9PLAN (Bacteriophage (PhiC31) resistance gene PglZ n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6C7Y6_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 9.520e-7
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 PTPEAIEALVLEVLKKNRRARVIGVRVDPLARWDGPSRLQLGDTVFAIAHARSLLEFRGHLATHEVDQSGLICLVGVDDRELGLDLRARLARRGLLAVEPRRTTQSRFH 327
            PT   I+A V  + +K+ RA VIG++     RW   +R+Q GD  + I    S L  R  +      ++  + + G+D+ ELG DLR RLA+  L  ++P +   S+F+
Sbjct:    6 PTFSQIKAQVATIQQKSSRADVIGIQSS--GRWSDDTRIQDGDQTYLIYQCDSPLACRIAIREPVEKKTTKVLITGLDENELGDDLRYRLAKHKLFNIDPWQMVCSQFN 112
[Close]
BLAST of mRNA_P-wetherbeei_contig18990.1.1 vs. uniprot
Match: A0A5A8BQ71_9PLAN (BREX-2 system phosphatase PglZ n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BQ71_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 6.150e-6
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    1 PTPEAIEALVLEVLKKNRRARVIGVRVDPLARWDGPSRLQLGDTVFAIAHARSLLEFRGHLATHEVDQSGLICLVGVDDRELGLDLRARLARRGLLAVEPRRTTQSRFH 327
            PT   I+A V  + +K  RA VIG+      RW   +R+Q GD  + I    S L  R  +     D++  + + G+++ +LG DLR RLA++ L  ++P +   S F+
Sbjct:    6 PTFSQIKAQVATIQQKTTRADVIGIH--SRGRWSDETRIQDGDQTYLIYQCDSPLACRIAIREPVPDKTTKVLITGLEENDLGDDLRYRLAKQRLFPLQPWQIVCSLFN 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A6C7Y6_9PLAN9.520e-733.03Bacteriophage (PhiC31) resistance gene PglZ n=1 Ta... [more]
A0A5A8BQ71_9PLAN6.150e-632.11BREX-2 system phosphatase PglZ n=1 Tax=Gimesia chi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18990contigP-wetherbeei_contig18990:409..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog344747.PM8797T_23469
PFAMsPglZ
Model size327
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.56e-07
EggNOG OGsCOG1524@1|root,COG1524@2|Bacteria,2J1TG@203682|Planctomycetes
DescriptionPglZ domain
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.7460432-CDS-P-wetherbeei_contig18990:408..7351683186160.7460432-CDS-P-wetherbeei_contig18990:408..735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18990 409..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18990.1.1prot_P-wetherbeei_contig18990.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18990 409..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18990.1.1

>prot_P-wetherbeei_contig18990.1.1 ID=prot_P-wetherbeei_contig18990.1.1|Name=mRNA_P-wetherbeei_contig18990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
PTPEAIEALVLEVLKKNRRARVIGVRVDPLARWDGPSRLQLGDTVFAIAH
ARSLLEFRGHLATHEVDQSGLICLVGVDDRELGLDLRARLARRGLLAVEP
RRTTQSRFH
back to top

mRNA from alignment at P-wetherbeei_contig18990:409..735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18990.1.1 ID=mRNA_P-wetherbeei_contig18990.1.1|Name=mRNA_P-wetherbeei_contig18990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig18990:409..735+ (Phaeothamnion wetherbeei SAG_119_79)
CCCACTCCTGAAGCAATCGAAGCTCTGGTCCTCGAAGTGCTCAAAAAGAA
CCGGCGAGCACGCGTCATAGGAGTCCGCGTAGATCCCCTCGCCCGCTGGG
ATGGCCCCTCTCGCCTCCAACTTGGAGACACCGTCTTTGCCATCGCTCAC
GCGCGCTCGCTCCTCGAATTTCGCGGCCATCTCGCGACTCACGAGGTCGA
CCAATCGGGACTCATTTGCCTGGTGGGAGTCGACGATCGAGAGCTCGGGC
TCGATCTCCGGGCGCGCCTGGCACGGCGCGGCCTCCTGGCCGTAGAACCG
CGACGCACAACACAGTCTCGCTTTCAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18990:409..735+

>mRNA_P-wetherbeei_contig18990.1.1 ID=mRNA_P-wetherbeei_contig18990.1.1|Name=mRNA_P-wetherbeei_contig18990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig18990:409..735+ (Phaeothamnion wetherbeei SAG_119_79)
CCCACTCCTGAAGCAATCGAAGCTCTGGTCCTCGAAGTGCTCAAAAAGAA
CCGGCGAGCACGCGTCATAGGAGTCCGCGTAGATCCCCTCGCCCGCTGGG
ATGGCCCCTCTCGCCTCCAACTTGGAGACACCGTCTTTGCCATCGCTCAC
GCGCGCTCGCTCCTCGAATTTCGCGGCCATCTCGCGACTCACGAGGTCGA
CCAATCGGGACTCATTTGCCTGGTGGGAGTCGACGATCGAGAGCTCGGGC
TCGATCTCCGGGCGCGCCTGGCACGGCGCGGCCTCCTGGCCGTAGAACCG
CGACGCACAACACAGTCTCGCTTTCAT
back to top