mRNA_P-wetherbeei_contig18973.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18973.1.1
Unique NamemRNA_P-wetherbeei_contig18973.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A3C0TUE0_9PROT (Short chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUE0_9PROT)

HSP 1 Score: 207 bits (527), Expect = 9.540e-65
Identity = 112/154 (72.73%), Postives = 123/154 (79.87%), Query Frame = 1
Query:    7 QPKAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            + K ALVTGA RRIGRAIAL LAADGWRVAVHY  S +DA ATVADI    G A AVQADLAD AS  ALI +AA+ LGP+SCLVNNAS+FENDRM DFT+ S    + +NL+APALLTQA ARQ P G  GNVINILDQRVWRLTPRY+SYTL
Sbjct:    9 ETKTALVTGAARRIGRAIALALAADGWRVAVHYQNSEKDARATVADIRAENGIAEAVQADLADAASCGALIARAADVLGPVSCLVNNASLFENDRMTDFTRESMGATLEVNLIAPALLTQALARQLPKGAQGNVINILDQRVWRLTPRYLSYTL 162          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A3M0XYG8_9PROT (SDR family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XYG8_9PROT)

HSP 1 Score: 182 bits (462), Expect = 9.080e-55
Identity = 95/155 (61.29%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    4 EQPKAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            + P+AALVTGA RR+GRAIAL LA  GW VAVHY  S  DA ATVADI  AGG A+A+QADLAD A ++ L+P+A  ALGPL CLVNNAS FE D ++  T+ SWDRH+  NL AP +L+QAFAR  P    G +IN++DQRVW LTP ++SYT+
Sbjct:   20 DYPRAALVTGAARRVGRAIALDLARHGWAVAVHYRTSAADAAATVADIEAAGGRALALQADLADEADVETLVPRAVAALGPLGCLVNNASTFEMDTIETATRESWDRHIEPNLRAPLVLSQAFARALPMPDGGVIINLIDQRVWNLTPYFLSYTV 174          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A2S2CLX8_9PROT (Short chain dehydrogenase n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CLX8_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.720e-54
Identity = 96/152 (63.16%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            KAALVTGAG+RIGRAIAL LAA GW VAVHY  SR DA+A VA+I  AGG AVAV  DL   + ++ L+P A E LGPL  LVNNASVFE D   D T+ SWDRHM  NL AP +L+Q FARQ P G+ G ++NILDQRVW  TP ++SYT+
Sbjct:    7 KAALVTGAGKRIGRAIALDLAAHGWDVAVHYLRSRADADAVVAEIAAAGGRAVAVAGDLERESEVEGLVPAAVERLGPLGLLVNNASVFERDEALDATRRSWDRHMEANLRAPFVLSQQFARQLPEGERGLIVNILDQRVWNPTPHFVSYTV 158          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A351T7T7_9PROT (Short-chain dehydrogenase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T7T7_9PROT)

HSP 1 Score: 178 bits (451), Expect = 3.230e-54
Identity = 95/152 (62.50%), Postives = 109/152 (71.71%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            K  LVTGA RRIGRAIA  LAA GW V VHYG S   A A VADI  AGG AVA+ ADLAD A++  LI + A   GP++CL+NNAS+FE+D +   T+ SW  HM +NL APALL QAFA Q P    GNVINI+DQRVWRLTPR+ SYTL
Sbjct:    8 KVVLVTGAARRIGRAIATDLAAHGWHVGVHYGTSATQASALVADIRAAGGQAVALDADLADAAAVGDLIDRLAAEFGPVNCLINNASLFEHDAIDTMTRDSWAAHMDVNLYAPALLMQAFAAQLPEPMRGNVINIIDQRVWRLTPRFFSYTL 159          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: W9H4H7_9PROT (Short-chain dehydrogenase n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9H4H7_9PROT)

HSP 1 Score: 179 bits (454), Expect = 9.780e-54
Identity = 92/152 (60.53%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            K  L+TGAG+RIGRA+AL LAA GW VAVHY  SR+DA+  VA+I  AGG AVA+Q DL D A    L+P+A E LGPL+ L+NNASVFE D +    + SWDRH+  NL AP +L+QAFARQ P  + G V+NILDQRVW LTP ++SYTL
Sbjct:    7 KTVLITGAGKRIGRAMALDLAAHGWAVAVHYFTSRDDADGVVAEIASAGGRAVAIQGDLGDEADTVRLVPEAVERLGPLTALINNASVFERDEIGTADRTSWDRHIETNLRAPLVLSQAFARQLPDDERGCVVNILDQRVWNLTPHFLSYTL 158          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: W6KCF0_MAGSQ (Putative short chain dehydrogenase/reductase n=1 Tax=Magnetospira sp. (strain QH-2) TaxID=1288970 RepID=W6KCF0_MAGSQ)

HSP 1 Score: 177 bits (450), Expect = 3.500e-53
Identity = 97/152 (63.82%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            KAALVTGAG RIGRAIAL LAA GW VA+HY  S E A+  VADI   GG A+AV A+LAD A +  LI +AA  LGPLSCLVNNASVFE+D     ++ SWDRHM +NL AP +LTQA A Q P    G VINI+DQRVW LTP + SYTL
Sbjct:    3 KAALVTGAGVRIGRAIALDLAAQGWAVAIHYNQSAEPADKVVADIHAQGGRAIAVDAELADEAQVATLIDRAASKLGPLSCLVNNASVFEHDDALGASRDSWDRHMEVNLRAPFVLTQALADQLPEAAQGQVINIIDQRVWNLTPHFTSYTL 154          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A6C1SRG6_9PROT (SDR family oxidoreductase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6C1SRG6_9PROT)

HSP 1 Score: 177 bits (449), Expect = 6.260e-53
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            K ALVTGAGRRIGRAIAL LA DGW+VAVHY  S  +A A V +I EAGG +V V+ DL   A + ALI +AA  +GPL+CL+NNASVFE D +   T+  WDRHM++NL AP +LTQA   Q P    GNVINILDQRVW LTP + SYT+
Sbjct:   11 KTALVTGAGRRIGRAIALALAGDGWKVAVHYNRSDAEARAVVEEIAEAGGRSVPVRGDLGVDADVAALIDRAAAEIGPLTCLINNASVFERDEVMTTTRAGWDRHMQVNLWAPFMLTQALVSQLPDEAGGNVINILDQRVWNLTPHFTSYTV 162          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A512DRC8_9PROT (Short chain dehydrogenase n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DRC8_9PROT)

HSP 1 Score: 176 bits (445), Expect = 2.240e-52
Identity = 91/152 (59.87%), Postives = 111/152 (73.03%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            K+ L+TGAG+RIG+AIAL LAA GW VAVHY  SR+DA+A V +I   GG A AVQA+L   A    L+P A E LGPL+ LVNNASVFE D + D  + SWDRHM  NL AP +L+QAFARQ P  + G ++NI+DQRVW LTP ++SYTL
Sbjct:    7 KSVLITGAGKRIGKAIALDLAAQGWGVAVHYFTSRDDADAVVEEITRQGGRAAAVQANLGIEAETVGLVPAAVEQLGPLTALVNNASVFERDEIDDADRESWDRHMETNLRAPLVLSQAFARQLPADEDGCIVNIIDQRVWNLTPHFVSYTL 158          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A0P0ESV8_AZOBR (SDR family oxidoreductase n=18 Tax=Azospirillum TaxID=191 RepID=A0A0P0ESV8_AZOBR)

HSP 1 Score: 175 bits (444), Expect = 3.170e-52
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 KAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            KAALVTGAG+RIGRAIAL LA  GWRV VH+G SR +A+A V  I   GG AVA+QADL       AL+P+A E LG LS LVNNAS FE D ++D T+ SWDRHM  NL AP +L+QAFA Q P    G ++N++DQRVW LTP +ISYTL
Sbjct:    7 KAALVTGAGKRIGRAIALDLAVRGWRVGVHFGHSRNEADAVVTQIVGQGGVAVALQADLEREMDAQALVPEAVERLGTLSLLVNNASRFERDEVEDVTRESWDRHMEANLRAPFVLSQAFAAQVPGDAEGLIVNMIDQRVWNLTPHFISYTL 158          
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Match: A0A1Y5U1D0_9PROT (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=2 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5U1D0_9PROT)

HSP 1 Score: 174 bits (442), Expect = 7.560e-52
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   22 LVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADICEAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQDFTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPRYISYTL 468
            LVTG   RIGRAIA+ LAADGW VA+H   SR  AEATVA+I ++GG A  V ADLAD  +L  L+P AA A+GPL+ LVNNASVFE D + D T+ SW RH+ +NL AP  L QAFA Q P G+ GN+IN+ DQRV+RLTP ++SYT+
Sbjct:   16 LVTGGAARIGRAIAIALAADGWSVALHCNRSRAAAEATVAEIEKSGGRAAVVLADLADPGALAGLVPAAARAIGPLTALVNNASVFERDEIDDLTEESWQRHIDVNLKAPLFLAQAFAAQRPAGRPGNIINLTDQRVFRLTPHFVSYTV 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUE0_9PROT9.540e-6572.73Short chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A3M0XYG8_9PROT9.080e-5561.29SDR family oxidoreductase n=1 Tax=Alphaproteobacte... [more]
A0A2S2CLX8_9PROT1.720e-5463.16Short chain dehydrogenase n=1 Tax=Azospirillum the... [more]
A0A351T7T7_9PROT3.230e-5462.50Short-chain dehydrogenase (Fragment) n=2 Tax=Alpha... [more]
W9H4H7_9PROT9.780e-5460.53Short-chain dehydrogenase n=1 Tax=Skermanella stib... [more]
W6KCF0_MAGSQ3.500e-5363.82Putative short chain dehydrogenase/reductase n=1 T... [more]
A0A6C1SRG6_9PROT6.260e-5361.18SDR family oxidoreductase n=1 Tax=Rhodospirillales... [more]
A0A512DRC8_9PROT2.240e-5259.87Short chain dehydrogenase n=1 Tax=Skermanella aero... [more]
A0A0P0ESV8_AZOBR3.170e-5261.18SDR family oxidoreductase n=18 Tax=Azospirillum Ta... [more]
A0A1Y5U1D0_9PROT7.560e-5260.403-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18973contigP-wetherbeei_contig18973:3..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380394.JADL01000002_gene1144
PFAMsadh_short,adh_short_C2
Model size468
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.61e-55
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2TR0A@28211|Alphaproteobacteria,2JPRF@204441|Rhodospirillales
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Cds size468
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.470995-CDS-P-wetherbeei_contig18973:2..4701683186160.470995-CDS-P-wetherbeei_contig18973:2..470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18973 3..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18973.1.1prot_P-wetherbeei_contig18973.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18973 3..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18973.1.1

>prot_P-wetherbeei_contig18973.1.1 ID=prot_P-wetherbeei_contig18973.1.1|Name=mRNA_P-wetherbeei_contig18973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MEQPKAALVTGAGRRIGRAIALGLAADGWRVAVHYGASREDAEATVADIC
EAGGYAVAVQADLADTASLDALIPQAAEALGPLSCLVNNASVFENDRMQD
FTQHSWDRHMRINLLAPALLTQAFARQHPHGQAGNVINILDQRVWRLTPR
YISYTL
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mRNA from alignment at P-wetherbeei_contig18973:3..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18973.1.1 ID=mRNA_P-wetherbeei_contig18973.1.1|Name=mRNA_P-wetherbeei_contig18973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig18973:3..470- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACAACCAAAGGCAGCGCTGGTCACCGGGGCCGGGCGCCGTATCGG GCGGGCGATTGCGCTGGGGCTGGCCGCCGATGGCTGGCGGGTGGCGGTGC ATTATGGCGCATCGCGCGAAGACGCCGAGGCGACGGTTGCCGATATATGC GAGGCGGGCGGTTATGCCGTCGCCGTGCAGGCGGACCTCGCCGATACGGC GTCCCTTGACGCCTTGATCCCGCAGGCGGCCGAGGCGCTGGGGCCGCTCA GCTGTCTGGTCAATAACGCCTCCGTCTTTGAAAATGACCGGATGCAGGAT TTCACGCAGCATAGCTGGGACCGGCATATGCGCATTAATCTGCTGGCGCC TGCACTGCTGACCCAGGCGTTTGCCCGCCAGCACCCGCACGGACAGGCAG GCAATGTCATCAATATTCTGGATCAGCGGGTATGGCGGCTGACACCGCGT TATATTTCCTATACACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18973:3..470-

>mRNA_P-wetherbeei_contig18973.1.1 ID=mRNA_P-wetherbeei_contig18973.1.1|Name=mRNA_P-wetherbeei_contig18973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig18973:3..470- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACAACCAAAGGCAGCGCTGGTCACCGGGGCCGGGCGCCGTATCGG
GCGGGCGATTGCGCTGGGGCTGGCCGCCGATGGCTGGCGGGTGGCGGTGC
ATTATGGCGCATCGCGCGAAGACGCCGAGGCGACGGTTGCCGATATATGC
GAGGCGGGCGGTTATGCCGTCGCCGTGCAGGCGGACCTCGCCGATACGGC
GTCCCTTGACGCCTTGATCCCGCAGGCGGCCGAGGCGCTGGGGCCGCTCA
GCTGTCTGGTCAATAACGCCTCCGTCTTTGAAAATGACCGGATGCAGGAT
TTCACGCAGCATAGCTGGGACCGGCATATGCGCATTAATCTGCTGGCGCC
TGCACTGCTGACCCAGGCGTTTGCCCGCCAGCACCCGCACGGACAGGCAG
GCAATGTCATCAATATTCTGGATCAGCGGGTATGGCGGCTGACACCGCGT
TATATTTCCTATACACTC
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