mRNA_P-wetherbeei_contig1893.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1893.2.1
Unique NamemRNA_P-wetherbeei_contig1893.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1893.2.1 vs. uniprot
Match: A0A6H5L8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H6_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 5.830e-78
Identity = 208/607 (34.27%), Postives = 295/607 (48.60%), Query Frame = 1 
Query:    4 GAVERPSLAHAPLGGSYAFADAAGKNLAADTSAAARQSXXXYGGAAARAADGGTDGRFSVGSASHTAAEAQPWWEIVLPQRNRIGFLRVFGPQAETERQEVQVVTITAISSDSAVSGGYFRLGFVDADGRANTTDAIRPTAVGSIMDEVSSTAAXXXXXXXXXXXXGESMEALLRALLVAGAVSVSSSSGDVTDDGGYGGVTHRTWTITFPTSSGDVGQLFVAEDALEDG--GSGHKVGVHTLQDGAAAGGISYGGLTHHTNATYAPAWLLLFDDXXXXXXXDGGGPLASLEGARALAVYSYYIASADRQLALTLPADTWARTVRIQLVGSGALSLAEVQIYEGGFAALSAYAGASPVPPRPRWDPLLAERSLTEAFAGVALSGAWTLRVADGGTAAASAAVSATALAMEHGEGGIGGWTLLLLDDAGIHRAYTMDAFATVETLPDYGTL---SMRSGAALMPAA-----------------------------GMLRHVASC-AAGGDVALQLPRDGGPGWQDGVPTAAACAAAFGAGPRLGGRQLGAVAWRNQIRPDADGGGGXXXXXXXXXXXXXXSAWLWYKPAAGFTGSDSFSFSVTIGGVK 1719
            GA  RP+  H  +G  YAFAD  G+N+A    A +RQS   +GG +  A DG     FS GS + T+ E QPWW++ L +   +G++R+FG + E  + EVQ +T+    S++A+ GG F L F D+ G ++ TD I+  AVG++ +E  +               GES+E+ L  L  +G  SV               V  RTWT+TF + SGDV Q+ +  D   DG    G+     T+QDG   GG+   G++H  N  + P+W+++F+        +    L SLE A+A A YS Y+   + ++ + +P     R +R+QL G+G LS++E+Q YE  F   S    ++PVP R  WDP+ AE SLT AF G  +SG WTLR+ D         +   A    HG+GG+ GW L++ D  G    +T D+  TVETLP YG L   +  +  AL  A+                             G  RH+ +C A GG       R+              C   FG+GP L  R LGAVA RN+++  A GGG                A  WY P  G+ G D F FSVT+ GVK
Sbjct:  864 GAPSRPAYWHRGIGYDYAFADVVGENVAKHEQAVSRQSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQVTLTKSYTLGYIRLFGREDEVVKPEVQTITLR---SNNAL-GGSFTLNFTDSLGISSLTDDIQYNAVGALGEERGNGTGTGS---------GESLESKLEEL--SGITSVEDED-----------VYQRTWTVTFVSPSGDVPQIGLGSD---DGLTSFGNTFTFATIQDGTTPGGVYVDGVSHSINTMHGPSWVMVFNST------EAAEGLESLEEAKAAASYSVYLPDNEPEVNMPIPGGVVGRVIRVQLEGTGYLSISELQAYELSFLPFSKSTRSNPVPVREEWDPIHAEESLTAAFMGTTVSGQWTLRLRDTTAMEVGTGIGRAANRHAHGDGGVAGWELVVTDFFGNVFRFTTDSVVTVETLPKYGRLFAGASNAAEALTAASTTTXXVTINXXXXXNYQETSTAYQITAADGFDRHLGTCHAVGGGDRGDRSRN--------------CPDMFGSGPSLSTRSLGAVAARNRVQA-APGGG----------------AKFWYLPEEGYLGPDDFGFSVTVAGVK 1404
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BLAST of mRNA_P-wetherbeei_contig1893.2.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 2.540e-69
Identity = 202/605 (33.39%), Postives = 283/605 (46.78%), Query Frame = 1 
Query:    4 GAVERPSLAHAPLGGSYAFADAAGKNLAADTSAAARQSXXXYGGAAARAADGGTDGRFSVGSASHTAAEAQPWWEIVLPQRNRIGFLRVFGPQAETERQEVQVVTITAISSDSAVSGGYFRLGFVDADGRANTTDAIRPTAVGSIMDEVSSTAAXXXXXXXXXXXXGESMEALLRALLVAGAVSVSSSSGDVTDDGGYGGVTHRTWTITFPTSSGDVGQLFVAEDALEDGGSGHKVGVHTLQDGAAAGGISYGGLTHHTNATYAPAWLLLFDDXXXXXXXDGGGPLASLEGARALAVYSYYIASADRQLALTLPADTWARTVRIQLVGSGALSLAEVQIYEGGFAALSAYAGASPVPPRPRWDPLLAERSLTEAFAGVALSGAWTLRVADGGTAAASAAVSATALAMEHGEGGIGGWTLLLLDDAGIHRAYTMDAFATVETLPDYGTL---SMRSGAALMPAA-----------------------------GMLRHVASC-AAGGDVALQLPRDGGPGWQDGVPTAAACAAAFGAGPRLGGRQLGAVAWRNQIRPDADGGGGXXXXXXXXXXXXXXSAWLWYKPAAGFTGSDSFSFSVTIGGVK 1719
            GA  RP+  H  +G  YAFAD  G+N+A    A +RQS   +GG +  A DG     FS GS + T+ E QPWW++   +   +G++R+FG + E  + EVQ +T+    S++A+ GG F L F D+ G ++ TD I+  AVG++ +E  +               GES+E+ L  L    +V V+ SS   + D     V  RTWT+TF + SGDV Q+ +  D       G+     T+QDG   GG+                                     +LE A+A A YS Y+   + ++ + +P     R +R+QL G+G LS++E+Q YE  F  LS    ++PVP R  WDP+ AE SLT AF G  +SG WTLR+ D    A    +   A    HG+GG+ GW L++ D  G    +T D+  TVETLP YG L   +  +  AL  A+                             G  RH+ +C A GG       R+              C   FG+GP L  R LGAVA RN+++  A GGG                A LWY P  G+ G D F FSVT+ GVK
Sbjct: 1577 GAPSRPAYWHRGIGYDYAFADVVGENVAKHEQAVSRQSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQVTFIKSYTLGYVRLFGREDEVVKPEVQTITLR---SNNAL-GGSFTLNFTDSLGTSSLTDDIQYNAVGALGEERGNGTGTGS---------GESLESKLEELSGITSVEVTRSSSPSSQDED---VYQRTWTVTFVSPSGDVPQIGLGSDEGLTS-FGNTFTFATIQDGTTPGGLE------------------------------------TLEEAKAAASYSVYLPDNEPEVNIPIPGGIVGRVIRVQLEGTGYLSISELQAYELSFLPLSKPTRSNPVPVREEWDPIHAEESLTAAFMGTTVSGQWTLRLRDTTAMAVGTGIGRAANRHAHGDGGVAGWELVVTDFFGNVFRFTTDSVVTVETLPKYGRLFAGASNAAEALTAASTTTXXXXXXXXXXTNYQETSTAYHITAADGFDRHLGACHAVGGGDRGDRSRN--------------CPDMFGSGPSLSTRSLGAVAARNRVQA-APGGG----------------AKLWYLPEEGYLGPDDFGFSVTVAGVK 2097
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BLAST of mRNA_P-wetherbeei_contig1893.2.1 vs. uniprot
Match: A0A2E1VSR9_9BACT (FTP domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VSR9_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 7.510e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  106 ARQSXXXYGGAAARAADGGTDGRFSVGSASHTAAEAQPWWEIVLPQRNRIGFLRVF 273
            ARQS   Y G A  A DG TDGRF   S +HT  EA PWWE+ LP+   +  +RV+
Sbjct:  542 ARQSSTSYDGPAELAIDGNTDGRFEQASVTHTRTEANPWWELELPEAQTLDEIRVW 597
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1893.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L8H6_9PHAE5.830e-7834.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8I0_ECTSI2.540e-6933.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E1VSR9_9BACT7.510e-550.00FTP domain-containing protein n=1 Tax=Planctomycet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1893contigP-wetherbeei_contig1893:3978..6474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8I0
PFAMsYHYH
Model size1720
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.16e-70
EggNOG OGs2CN6T@1|root,2QU8Z@2759|Eukaryota
Cds size1719
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.2530382-CDS-P-wetherbeei_contig1893:3977..47261683186159.2530382-CDS-P-wetherbeei_contig1893:3977..4726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1893 3978..4726 +
1683186159.2778301-CDS-P-wetherbeei_contig1893:4914..51281683186159.2778301-CDS-P-wetherbeei_contig1893:4914..5128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1893 4915..5128 +
1683186159.2868452-CDS-P-wetherbeei_contig1893:5509..57991683186159.2868452-CDS-P-wetherbeei_contig1893:5509..5799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1893 5510..5799 +
1683186159.2949526-CDS-P-wetherbeei_contig1893:6008..64741683186159.2949526-CDS-P-wetherbeei_contig1893:6008..6474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1893 6009..6474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1893.2.1prot_P-wetherbeei_contig1893.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1893 3978..6474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1893.2.1

>prot_P-wetherbeei_contig1893.2.1 ID=prot_P-wetherbeei_contig1893.2.1|Name=mRNA_P-wetherbeei_contig1893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=573bp
AGAVERPSLAHAPLGGSYAFADAAGKNLAADTSAAARQSSAAYGGAAARA
ADGGTDGRFSVGSASHTAAEAQPWWEIVLPQRNRIGFLRVFGPQAETERQ
EVQVVTITAISSDSAVSGGYFRLGFVDADGRANTTDAIRPTAVGSIMDEV
SSTAAAAAAAVGTGAGIGESMEALLRALLVAGAVSVSSSSGDVTDDGGYG
GVTHRTWTITFPTSSGDVGQLFVAEDALEDGGSGHKVGVHTLQDGAAAGG
ISYGGLTHHTNATYAPAWLLLFDDDSNAAGGDGGGPLASLEGARALAVYS
YYIASADRQLALTLPADTWARTVRIQLVGSGALSLAEVQIYEGGFAALSA
YAGASPVPPRPRWDPLLAERSLTEAFAGVALSGAWTLRVADGGTAAASAA
VSATALAMEHGEGGIGGWTLLLLDDAGIHRAYTMDAFATVETLPDYGTLS
MRSGAALMPAAGMLRHVASCAAGGDVALQLPRDGGPGWQDGVPTAAACAA
AFGAGPRLGGRQLGAVAWRNQIRPDADGGGGDGGGGDGGGSGGGGSAWLW
YKPAAGFTGSDSFSFSVTIGGVK
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mRNA from alignment at P-wetherbeei_contig1893:3978..6474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1893.2.1 ID=mRNA_P-wetherbeei_contig1893.2.1|Name=mRNA_P-wetherbeei_contig1893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2497bp|location=Sequence derived from alignment at P-wetherbeei_contig1893:3978..6474+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGTGCTGTGGAGCGTCCGTCCTTAGCGCACGCGCCGCTGGGCGGCAG
TTATGCTTTTGCGGACGCCGCCGGCAAGAACCTGGCGGCGGACACGAGCG
CCGCGGCGCGTCAGAGCTCCGCCGCCTACGGTGGTGCGGCGGCGCGGGCG
GCGGACGGCGGCACCGACGGCCGCTTCTCCGTCGGCTCGGCGTCGCACAC
CGCCGCGGAGGCGCAGCCGTGGTGGGAAATTGTTCTGCCGCAGCGGAACC
GCATCGGCTTTCTGCGCGTCTTCGGCCCGCAGGCCGAGACGGAGCGCCAG
GAGGTTCAGGTCGTGACAATTACGGCGATTTCATCGGATTCGGCGGTTAG
CGGCGGTTATTTCCGCCTGGGCTTCGTCGACGCCGACGGCCGCGCCAACA
CGACTGACGCCATCCGGCCCACGGCCGTTGGATCCATCATGGACGAAGTG
TCGTCCACTGCCGCTGCAGCCGCCGCCGCAGTCGGCACCGGTGCCGGCAT
CGGCGAGTCGATGGAAGCGTTGCTGCGGGCGCTGCTGGTGGCGGGCGCTG
TCAGCGTCAGCAGCAGCAGCGGCGATGTAACGGACGACGGCGGATACGGA
GGCGTGACACACCGGACGTGGACCATTACATTTCCGACGTCTTCTGGCGA
CGTCGGGCAGCTGTTCGTCGCGGAGGATGCTCTTGAAGACGGCGGCAGCG
GGCACAAAGTCGGCGTTCACACGCTGCAGGACGGCGCTGCGGCGGGCGGG
TGAGTTGTCGAAATGATCAGGTGCTTTTGATGGGTGGTGGCGGTGGTAGG
AACCACCAAGTTTTCCAGCGCGTGTTGCACCGTCTTGCTCATTTTGGAGC
TGTTTTCCGTAGGTCTATTCAACTCCGCTGTTTATTTCTAAATGATATTG
TCGACTCTCGATGGTTTCTAAATCCCCTTCAATGCAGGATCTCGTACGGC
GGCCTGACCCACCACACCAACGCCACCTACGCGCCGGCGTGGCTGCTGCT
CTTCGATGACGACAGCAACGCTGCCGGCGGCGACGGCGGCGGGCCGCTCG
CTTCGCTAGAGGGCGCTCGGGCTCTGGCCGTCTACTCCTACTACATTGCG
AGCGCCGACCGCCAGCTGGCACTGACGCTTCCTGCCGACACGTGGGCCCG
GGTAAGGCACGGCTTTCTTAATAGGGATGAAGACTACGGGGTGGAAGCGG
CGGCAGCGGTTTCTGCGGCGGCAGCAGGAGAAGATGGAAGCAGAGAAAGC
TGCTGTTAGGAGTAAATCGAGAAGAAGGCGGTGATCTTAGTCACCTGCAG
TTGCTATGGACGCTGCGGGGGGGCTTTATGCGCCGCCTGCGCGGCTCAAA
GGGCCCTGGGTACCGCTATGGTTGGTGATGCAGTTGCGGGTATTCCCTTG
GCCTCTATTTCTGTTCTGCCCGTTGGCTCTCTGAACCGCCGGCCCACTCA
CGCCGCAAACATGCCGCAAATAAACGACCCACTCCTTCTTCTTCGTCCGC
ATATAACACTCTGTCCTGTTTTGGTGCCGCAGACAGTGCGCATCCAGCTG
GTTGGGAGCGGCGCCCTCTCCCTCGCCGAGGTGCAGATCTACGAGGGCGG
CTTCGCGGCGCTCTCCGCCTACGCCGGCGCCAGCCCTGTGCCGCCGCGCC
CGCGGTGGGACCCGCTGCTCGCGGAGCGGAGCCTGACGGAGGCGTTTGCC
GGGGTGGCGCTGTCGGGAGCGTGGACCCTGCGGGTGGCTGACGGCGGCAC
GGCGGCGGCGAGCGCGGCAGTGTCGGCGACGGCGCTGGCGATGGAGCACG
GCGAAGGTGGCATCGGCGGCTGGTGAGCTCTCAGAAACGGAAAGATAGAG
GCATGCACCGTTTGCTTCTTTCAAACTTTCCCTCTATTATGTGCCCCAAC
GCCCACCGCGTCCCGCTGATACGCTTGCCTCTGTGCTTGCGGCACCGGCC
TGATGGCCTCTCATATGCCCGTTTTATTGGCTTCTGCTCTACTGCCCCTA
CCAAAGATCGTTTCGCATCTCCTGTCTGCAGGACTCTCCTCCTGCTGGAC
GATGCCGGAATCCACCGCGCCTACACGATGGACGCCTTCGCCACCGTCGA
GACGCTTCCTGACTACGGGACCCTTTCCATGCGCAGCGGCGCCGCCCTGA
TGCCGGCCGCCGGTATGCTCCGCCACGTAGCCTCCTGCGCGGCCGGCGGC
GACGTAGCGCTGCAGCTGCCGCGCGACGGCGGTCCTGGCTGGCAGGACGG
CGTCCCCACCGCCGCCGCCTGCGCCGCCGCTTTTGGCGCTGGGCCGCGCC
TCGGTGGTCGGCAGCTGGGGGCTGTGGCGTGGAGAAATCAAATTCGCCCG
GACGCAGACGGCGGGGGCGGCGACGGCGGCGGTGGCGACGGTGGCGGCAG
CGGCGGCGGCGGCAGCGCTTGGCTGTGGTACAAGCCGGCGGCGGGCTTCA
CCGGGTCAGACAGCTTCAGCTTCAGTGTGACAATTGGTGGGGTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1893:3978..6474+

>mRNA_P-wetherbeei_contig1893.2.1 ID=mRNA_P-wetherbeei_contig1893.2.1|Name=mRNA_P-wetherbeei_contig1893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1719bp|location=Sequence derived from alignment at P-wetherbeei_contig1893:3978..6474+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGTGCTGTGGAGCGTCCGTCCTTAGCGCACGCGCCGCTGGGCGGCAG
TTATGCTTTTGCGGACGCCGCCGGCAAGAACCTGGCGGCGGACACGAGCG
CCGCGGCGCGTCAGAGCTCCGCCGCCTACGGTGGTGCGGCGGCGCGGGCG
GCGGACGGCGGCACCGACGGCCGCTTCTCCGTCGGCTCGGCGTCGCACAC
CGCCGCGGAGGCGCAGCCGTGGTGGGAAATTGTTCTGCCGCAGCGGAACC
GCATCGGCTTTCTGCGCGTCTTCGGCCCGCAGGCCGAGACGGAGCGCCAG
GAGGTTCAGGTCGTGACAATTACGGCGATTTCATCGGATTCGGCGGTTAG
CGGCGGTTATTTCCGCCTGGGCTTCGTCGACGCCGACGGCCGCGCCAACA
CGACTGACGCCATCCGGCCCACGGCCGTTGGATCCATCATGGACGAAGTG
TCGTCCACTGCCGCTGCAGCCGCCGCCGCAGTCGGCACCGGTGCCGGCAT
CGGCGAGTCGATGGAAGCGTTGCTGCGGGCGCTGCTGGTGGCGGGCGCTG
TCAGCGTCAGCAGCAGCAGCGGCGATGTAACGGACGACGGCGGATACGGA
GGCGTGACACACCGGACGTGGACCATTACATTTCCGACGTCTTCTGGCGA
CGTCGGGCAGCTGTTCGTCGCGGAGGATGCTCTTGAAGACGGCGGCAGCG
GGCACAAAGTCGGCGTTCACACGCTGCAGGACGGCGCTGCGGCGGGCGGG
ATCTCGTACGGCGGCCTGACCCACCACACCAACGCCACCTACGCGCCGGC
GTGGCTGCTGCTCTTCGATGACGACAGCAACGCTGCCGGCGGCGACGGCG
GCGGGCCGCTCGCTTCGCTAGAGGGCGCTCGGGCTCTGGCCGTCTACTCC
TACTACATTGCGAGCGCCGACCGCCAGCTGGCACTGACGCTTCCTGCCGA
CACGTGGGCCCGGACAGTGCGCATCCAGCTGGTTGGGAGCGGCGCCCTCT
CCCTCGCCGAGGTGCAGATCTACGAGGGCGGCTTCGCGGCGCTCTCCGCC
TACGCCGGCGCCAGCCCTGTGCCGCCGCGCCCGCGGTGGGACCCGCTGCT
CGCGGAGCGGAGCCTGACGGAGGCGTTTGCCGGGGTGGCGCTGTCGGGAG
CGTGGACCCTGCGGGTGGCTGACGGCGGCACGGCGGCGGCGAGCGCGGCA
GTGTCGGCGACGGCGCTGGCGATGGAGCACGGCGAAGGTGGCATCGGCGG
CTGGACTCTCCTCCTGCTGGACGATGCCGGAATCCACCGCGCCTACACGA
TGGACGCCTTCGCCACCGTCGAGACGCTTCCTGACTACGGGACCCTTTCC
ATGCGCAGCGGCGCCGCCCTGATGCCGGCCGCCGGTATGCTCCGCCACGT
AGCCTCCTGCGCGGCCGGCGGCGACGTAGCGCTGCAGCTGCCGCGCGACG
GCGGTCCTGGCTGGCAGGACGGCGTCCCCACCGCCGCCGCCTGCGCCGCC
GCTTTTGGCGCTGGGCCGCGCCTCGGTGGTCGGCAGCTGGGGGCTGTGGC
GTGGAGAAATCAAATTCGCCCGGACGCAGACGGCGGGGGCGGCGACGGCG
GCGGTGGCGACGGTGGCGGCAGCGGCGGCGGCGGCAGCGCTTGGCTGTGG
TACAAGCCGGCGGCGGGCTTCACCGGGTCAGACAGCTTCAGCTTCAGTGT
GACAATTGGTGGGGTCAAG
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