mRNA_P-wetherbeei_contig18868.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18868.1.1
Unique NamemRNA_P-wetherbeei_contig18868.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.140e-10
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSKT 108
            +QMFERFLEER A+P QPE+RFFDESI AKLNRSKT
Sbjct:  731 SQMFERFLEERTANPTQPEVRFFDESIAAKLNRSKT 766
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: I2CS53_NANGC (dDENN domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS53_NANGC)

HSP 1 Score: 54.7 bits (130), Expect = 5.810e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSKT 108
            +QMFERF+EER+  P  P+I+FFDESI+AKLNRSKT
Sbjct:    7 SQMFERFIEERLNEPDHPQIKFFDESIVAKLNRSKT 42
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.680e-8
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            +QMFERFLEE+++HP QPEIRFF+ESI+ KLNR K
Sbjct: 1036 SQMFERFLEEQLSHPDQPEIRFFEESIVQKLNRGK 1070
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A1E7FED1_9STRA (DENN-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FED1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.190e-7
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    4 QMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            Q+F+RFLEER+ +P  PEIRFFDESI+AK NRSK
Sbjct:  827 QLFQRFLEERIENPNLPEIRFFDESIVAKRNRSK 860
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: B7FQ36_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ36_PHATC)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    4 QMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            Q F RFL+ER+ +P  PEIRFFDESI+AK+NRSK
Sbjct:  830 QFFSRFLDERIQNPSDPEIRFFDESIIAKINRSK 863
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A8J9T554_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T554_PHATR)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    4 QMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            Q F RFL+ER+ +P  PEIRFFDESI+AK+NRSK
Sbjct:  830 QFFSRFLDERIQNPSDPEIRFFDESIIAKINRSK 863
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A7S2A7N5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N5_TRICV)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            +QMFERF+EER++ P QPE+ FFDESI+AK NRS+
Sbjct:  107 SQMFERFIEERISDPDQPEVLFFDESIIAKNNRSR 141
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A7S2HRL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HRL5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.490e-6
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    4 QMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            QMFERF+EER++ P QPE+ FFDE+I+AK NRSK
Sbjct:  130 QMFERFVEERISSPDQPEVLFFDETIVAKNNRSK 163
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A7S4R4H5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4H5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.920e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            +QMFERF+EER+  P QPE+R FDE+I+AK NRSK
Sbjct: 1242 SQMFERFVEERITSPDQPEMRLFDETIVAKNNRSK 1276
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BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Match: A0A7S4R4H9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4H9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.920e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 AQMFERFLEERVAHPRQPEIRFFDESILAKLNRSK 105
            +QMFERF+EER+  P QPE+R FDE+I+AK NRSK
Sbjct:  975 SQMFERFVEERITSPDQPEMRLFDETIVAKNNRSK 1009
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LU92_ECTSI6.140e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CS53_NANGC5.810e-972.22dDENN domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CKZ6_9STRA6.680e-874.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7FED1_9STRA8.190e-773.53DENN-domain-containing protein n=1 Tax=Fragilariop... [more]
B7FQ36_PHATC1.120e-670.59Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A8J9T554_PHATR1.120e-670.59Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S2A7N5_TRICV1.120e-668.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2HRL5_9STRA1.490e-670.59Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4R4H5_9STRA3.920e-668.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4R4H9_9STRA3.920e-668.57Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18868contigP-wetherbeei_contig18868:456..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LU92
PFAMsArfGap,C1_2,C2,DENN,DUF3490,PH,RhoGEF,dDENN,uDENN
Model size108
Max annot lvl2759|Eukaryota
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons1
Evalue3.2e-10
EggNOG OGsCOG5347@1|root,KOG2127@1|root,KOG0703@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size102
COG categoryL
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.2348702-CDS-P-wetherbeei_contig18868:455..5571683186157.2348702-CDS-P-wetherbeei_contig18868:455..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18868 456..557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.246222-UTR-P-wetherbeei_contig18868:557..5631683186157.246222-UTR-P-wetherbeei_contig18868:557..563Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18868 558..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18868.1.1prot_P-wetherbeei_contig18868.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18868 456..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18868.1.1

>prot_P-wetherbeei_contig18868.1.1 ID=prot_P-wetherbeei_contig18868.1.1|Name=mRNA_P-wetherbeei_contig18868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
MFERFLEERVAHPRQPEIRFFDESILAKLNRSKT
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mRNA from alignment at P-wetherbeei_contig18868:456..563-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18868.1.1 ID=mRNA_P-wetherbeei_contig18868.1.1|Name=mRNA_P-wetherbeei_contig18868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig18868:456..563- (Phaeothamnion wetherbeei SAG_119_79)
GCGCAGATGTTCGAGAGGTTCTTGGAGGAGCGCGTGGCGCACCCGCGGCA
GCCGGAGATCCGCTTCTTCGACGAATCCATCCTCGCCAAGCTTAACCGCT
CCAAGACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18868:456..563-

>mRNA_P-wetherbeei_contig18868.1.1 ID=mRNA_P-wetherbeei_contig18868.1.1|Name=mRNA_P-wetherbeei_contig18868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig18868:456..563- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGAGAGGTTCTTGGAGGAGCGCGTGGCGCACCCGCGGCAGCCGGA
GATCCGCTTCTTCGACGAATCCATCCTCGCCAAGCTTAACCGCTCCAAGA
CT
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