mRNA_P-wetherbeei_contig10662.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10662.1.1
Unique NamemRNA_P-wetherbeei_contig10662.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10662.1.1 vs. uniprot
Match: A0A7S4K1G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K1G7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.460e-8
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    7 ISALAAASVGGHRDIVRVLLEVPGAEVNDRDRDGLSCLMNASEIGADEVVALLLAKGKRADPN------AISTTGFTPLILAAAGGHSDVVRLLL 273
            I+A+  A+ GGH + V++LLE  GA+    D +GL+ L NA+E G   VV  L+     ++ +       +S+ GFTP+I+AAA GH DVVR L+
Sbjct:    1 ITAVMTAAAGGHAETVKLLLE-GGADARAEDGEGLTALHNAAENGTVAVVEALVKAASASEDSDEKYIDTLSSAGFTPVIIAAAHGHVDVVRYLI 94
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BLAST of mRNA_P-wetherbeei_contig10662.1.1 vs. uniprot
Match: R1F578_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F578_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-6
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   52 VRVLLEVPGAEVNDRDRDGLSCLMNASEIGAD-EVVALLLAKGKRADPNAISTTGFTPLILAAAGGHSDVVRLLL 273
            V+ LL VPGA+VND +R+G + + + +++ +D EV+A L+A G  AD NA +  G TPLI AA      VVR LL
Sbjct:   70 VKRLLSVPGADVNDANRNGKAAIHHTAQLRSDTEVLACLVAHG--ADVNATTHRGHTPLIYAAGRCREQVVRFLL 142
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BLAST of mRNA_P-wetherbeei_contig10662.1.1 vs. uniprot
Match: A0A151U1G7_CAJCA (Ankyrin-2 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U1G7_CAJCA)

HSP 1 Score: 57.8 bits (138), Expect = 3.360e-6
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    4 GISALAAASVGGHRDIVRVLLEVPGAEVNDRDRDGLSCLMNASEIGADEVVALLLAKGKRADPNAISTTGFTPLILAAAGGHSDVVRLLL 273
            G++AL AA+  GH+D+V VL E+ G +++  D +G   L  A E G    V +L+ KG   + NA++  G TPL +A   GH D+  LL+
Sbjct:  262 GLTALHAAAFKGHKDVVGVLCELAGLDLDCEDEEGHVPLHMAVEGGDVGTVRVLVEKG--VNVNAVNKRGATPLYMARIWGHDDICELLV 349
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BLAST of mRNA_P-wetherbeei_contig10662.1.1 vs. uniprot
Match: Q8C6Y6-2 (Isoform 2 of Ankyrin repeat and SOCS box protein 14 n=4 Tax=Mus TaxID=10088 RepID=Q8C6Y6-2)

HSP 1 Score: 53.9 bits (128), Expect = 7.360e-5
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   61 LLEVPGAEVNDRDRDGLSCLMNASEIGADEVVALLLAKGKRADPNAISTTGFTPLILAAAGGHSDVVRLLL 273
            LL   GA+VN R  +  + L  A+++G  ++V L+LA G  A P+A S+ GFTPL LAA GGH+ +++LLL
Sbjct:    4 LLISHGADVNLRCANERTALHEAAKLGRLDMVKLMLASG--AYPDARSSYGFTPLALAAQGGHTGIMQLLL 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10662.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4K1G7_9STRA1.460e-841.05Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
R1F578_EMIHU1.350e-646.67Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A151U1G7_CAJCA3.360e-638.89Ankyrin-2 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A... [more]
Q8C6Y6-27.360e-546.48Isoform 2 of Ankyrin repeat and SOCS box protein 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10662contigP-wetherbeei_contig10662:378..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5722.XP_001320769.1
Model size699
Max annot lvl5722.XP_001320769.1|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.16e-08
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size699
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185879.697481-CDS-P-wetherbeei_contig10662:377..5581683185879.697481-CDS-P-wetherbeei_contig10662:377..558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10662 378..558 +
1683185879.7108731-CDS-P-wetherbeei_contig10662:898..10921683185879.7108731-CDS-P-wetherbeei_contig10662:898..1092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10662 899..1092 +
1683185879.7245345-CDS-P-wetherbeei_contig10662:1388..15981683185879.7245345-CDS-P-wetherbeei_contig10662:1388..1598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10662 1389..1598 +
1683185879.732155-CDS-P-wetherbeei_contig10662:2164..22781683185879.732155-CDS-P-wetherbeei_contig10662:2164..2278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10662 2165..2278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10662.1.1prot_P-wetherbeei_contig10662.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10662 378..2278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10662.1.1

>prot_P-wetherbeei_contig10662.1.1 ID=prot_P-wetherbeei_contig10662.1.1|Name=mRNA_P-wetherbeei_contig10662.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
DGISALAAASVGGHRDIVRVLLEVPGAEVNDRDRDGLSCLMNASEIGADE
VVALLLAKGKRADPNAISTTGFTPLILAAAGGHSDVVRLLLGKGADVNAE
HPERVTPLMYAAAGGHLVTADILLQAGAAVNQLHAHGGSALLEACTSGDE
RLVELLLKAGADAQVRDRNGVTALMSAASAGRLKVSQPVALLGRAPSHRG
ATALMVAAGAGHEAVVVALLEGGADVRSVDETG
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mRNA from alignment at P-wetherbeei_contig10662:378..2278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10662.1.1 ID=mRNA_P-wetherbeei_contig10662.1.1|Name=mRNA_P-wetherbeei_contig10662.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1901bp|location=Sequence derived from alignment at P-wetherbeei_contig10662:378..2278+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCATTTCAGCGCTGGCGGCGGCGTCGGTGGGCGGCCACCGCGATAT
TGTCCGCGTGCTGCTGGAGGTCCCTGGGGCGGAAGTCAACGACCGTGACC
GCGACGGACTGTCGTGCCTCATGAATGCCTCCGAGATCGGCGCCGATGAG
GTGGTGGCGCTCCTCCTCGCCAAAGGCAAGCGTGCCATGTACCGTGTGCC
AGTCTCGGGGACGGTTCTGGAAATTTGGTGCTTTTGATTAGTGATATGCT
ATGGCCGCGCGGTTGACTGCCGGTTGCGCCGCGGCCACGTATTCGTATGC
GGAAGCGTGGCTGCGTGCTTTCTGCCCGCCGAGCCGCCCGTCATCTGGTA
GTTTTATGTCGACGCAGCGACGAAGACGTGGACAGTCTGCGGCTTTTCCC
AAAGCACCTGCTCAAATTGCTTTCAGGCCGCACCCGAAGGAGCCGCCGCG
GTCCCGCTGCCTCAATTGTGACCGGCACTCCTTGCTCTCGCCTGCCCCGT
CCCTCCTGGTGACAAGTTCAGGCGCGGACCCAAATGCGATATCGACGACG
GGCTTCACGCCCCTCATCCTGGCTGCCGCCGGCGGCCACAGTGACGTGGT
GCGGCTCCTGCTGGGCAAGGGCGCCGACGTCAACGCCGAGCACCCGGAGC
GTGTCACGCCGCTCATGTACGCTGCCGCGGGGGGCCACCTCGTCACGGCA
GACATTCTGCTGCAGGTAAAGAAAAATAGTCCTACCGAGCTGCCGCTGGA
AATCGCCTTATGTCGCTCGTTACTTTCAAACGACCGGCCTGCTGCGGTGT
GACTGAGGTGGCAAGGTTTGCCAAGTACTTCTCTTTGTTTCCCTGCTCTC
TCTATCGTCTCCTGGTGGCTTTGTCTTTATTTCATGAACCCGAAGCAGGA
CGATGCGGCTGGCTCGTCCCTTTCCTCACCTGCCTTCTTTTCTTTCGGCC
ATTCTTGCATGGCCCCGTCAACGTGGAACAAATGTGGAACATGGAACACG
GGCGGCGGCAGGCGGGGGCGGCGGTGAACCAGCTGCACGCCCACGGTGGG
TCAGCGCTGCTGGAGGCATGCACCTCGGGGGACGAGCGCCTCGTGGAGCT
GCTGCTCAAGGCTGGGGCAGACGCGCAGGTCCGCGACCGCAATGGTGTCA
CTGCGCTCATGAGCGCCGCATCGGCCGGCCGCCTGAAGGTGAGCCAGCCG
GTGGCGCTATTAGGCCGTGCTGTGCCGCGCTGCGCCGCGTTGCTACTTGC
CAGCCTGCCTGCCTGTTTTGCTTGTCTGTCTGCCGTTGCCATTTCCGCCC
CCGTCGCCGTTCTTGAGAGCCGTTGTTTTTGGTCGGGAAGAAGGTTTGCT
TGGCACTGCGGCTCTGTTCGTTCAGCTGTGCTAGTCTTCGTTCCTTTTTA
AAATGGGTCTGAAGCGTTAATTTGACCCGAACCCCTTTGTGGCAGGCCTG
CGAGCTCTTGCTGCGCGCCGGCGTCGACATCAACACCCACGCAACGAGCG
GCGGCACCGCGCTCATGTTCGCGGCTGCTGCTGGCGCGGCAGAGGTTGTG
AAGCTTCTGTTGGAGGCGGGGGCAACGGTCGACGCGAAAGTGGTGGCCGA
GACGGAGGGATCTGCGCAGCCCGGGGAGGCGACGGTAGGAGATGGGTCTG
ATGGCGGCGCAGAGGCAGGCGCGACGGGATCGGTGTCTTCGGACGACGCA
GCGGGTGCGGCTTCTTTTGCGAGCCCTGGCGGTATGAATAATGGGGCGGC
TGCGGCGGCGGCAGCTCCAGGACCCGAGCCCGGCCAGCCGTCGCACCGTG
GGGCCACCGCTCTCATGGTGGCTGCCGGGGCGGGGCACGAAGCTGTCGTG
GTGGCACTTTTGGAGGGCGGCGCCGACGTGCGGAGCGTCGACGAGACGGG
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10662:378..2278+

>mRNA_P-wetherbeei_contig10662.1.1 ID=mRNA_P-wetherbeei_contig10662.1.1|Name=mRNA_P-wetherbeei_contig10662.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig10662:378..2278+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCATTTCAGCGCTGGCGGCGGCGTCGGTGGGCGGCCACCGCGATAT
TGTCCGCGTGCTGCTGGAGGTCCCTGGGGCGGAAGTCAACGACCGTGACC
GCGACGGACTGTCGTGCCTCATGAATGCCTCCGAGATCGGCGCCGATGAG
GTGGTGGCGCTCCTCCTCGCCAAAGGCAAGCGCGCGGACCCAAATGCGAT
ATCGACGACGGGCTTCACGCCCCTCATCCTGGCTGCCGCCGGCGGCCACA
GTGACGTGGTGCGGCTCCTGCTGGGCAAGGGCGCCGACGTCAACGCCGAG
CACCCGGAGCGTGTCACGCCGCTCATGTACGCTGCCGCGGGGGGCCACCT
CGTCACGGCAGACATTCTGCTGCAGGCGGGGGCGGCGGTGAACCAGCTGC
ACGCCCACGGTGGGTCAGCGCTGCTGGAGGCATGCACCTCGGGGGACGAG
CGCCTCGTGGAGCTGCTGCTCAAGGCTGGGGCAGACGCGCAGGTCCGCGA
CCGCAATGGTGTCACTGCGCTCATGAGCGCCGCATCGGCCGGCCGCCTGA
AGGTGAGCCAGCCGGTGGCGCTATTAGGCCGTGCTCCGTCGCACCGTGGG
GCCACCGCTCTCATGGTGGCTGCCGGGGCGGGGCACGAAGCTGTCGTGGT
GGCACTTTTGGAGGGCGGCGCCGACGTGCGGAGCGTCGACGAGACGGGG
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