mRNA_P-wetherbeei_contig18821.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18821.2.1
Unique NamemRNA_P-wetherbeei_contig18821.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: UPI001E344E28 (type II toxin-antitoxin system prevent-host-death family antitoxin n=1 Tax=Gloeobacter morelensis TaxID=2907343 RepID=UPI001E344E28)

HSP 1 Score: 88.2 bits (217), Expect = 4.600e-20
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    7 EEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGRP 177
            EEVLITRRGK VARLVPAE  FDR KA RA+EGI E R+G+T GGLKIKDL+NEGRP
Sbjct:   24 EEVLITRRGKAVARLVPAEVGFDRAKAHRALEGILEARRGITLGGLKIKDLVNEGRP 80          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A537QRE5_9PROT (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRE5_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 1.040e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  144 QDQGFDQ*RSTVTFVLDSSVSLSWCFDDGFTGATGALMER-------------------------RRRIDSAKRVRHIEFLRDLPVAIDADTVSQAWTVTSQLAERHRLT 398
            QDQG DQ R+ V+FVLD+SV+L+WCF+D  T AT AL+ER                         R R+D+++R R   FL  LP+++DA+T SQAWT T+ LAER  L+
Sbjct:    3 QDQGSDQRRAVVSFVLDNSVALTWCFEDERTPATTALLERVGEAGALAPGLWPLEALNGLLVAERRGRLDASRRQRLAGFLHALPISLDAETASQAWTTTAGLAERFALS 112          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A369XLQ5_9PROT (Ribonuclease VapC n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A369XLQ5_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-19
Identity = 52/100 (52.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:  177 VTFVLDSSVSLSWCFDDGFTGATGALMER-------------------------RRRIDSAKRVRHIEFLRDLPVAIDADTVSQAWTVTSQLAERHRLTL 401
            ++FVLDSSVSLSWCFDD  T AT AL+ER                         RRRID+  R R   FL DLPVAID +T SQAW VT+QLA R RLT+
Sbjct:    1 MSFVLDSSVSLSWCFDDERTDATDALLERIVESGADAPALWPLEVLNALAMAERRRRIDAEHRQRLAGFLCDLPVAIDEETASQAWAVTAQLAARFRLTV 100          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A369XJS6_9PROT (Antitoxin n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A369XJS6_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 1.300e-19
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    7 EEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGRP 177
            EEVLITRRGK VARLVPAEP FDR KARRA +G+ + R+ +T GGLKIKDL+NEGRP
Sbjct:   24 EEVLITRRGKAVARLVPAEPGFDRAKARRAADGLLDARRDVTLGGLKIKDLVNEGRP 80          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A537QRI4_9PROT (Antitoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRI4_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 1.330e-16
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RREEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGR 174
            R EE++ITRRGKPVA+LVPA P FDR KARRAV G+ E  +G+T G LKIKDLI+EGR
Sbjct:   22 RGEEIVITRRGKPVAKLVPAGPDFDRAKARRAVAGLLEASRGVTLGCLKIKDLISEGR 79          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: UPI001BACA007 (type II toxin-antitoxin system prevent-host-death family antitoxin n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BACA007)

HSP 1 Score: 79.0 bits (193), Expect = 1.880e-16
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   10 EVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGR 174
            EV+ITRRGKP+ARLVPAE  F+R+KARRA EG+R   KG T GGL I+DLI+EGR
Sbjct:   25 EVMITRRGKPIARLVPAETGFNRDKARRAAEGLRTASKGQTLGGLSIRDLIDEGR 79          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A2T5JMR0_9PROT (Putative nucleic acid-binding protein n=1 Tax=Nitrosospira sp. Nsp5 TaxID=200119 RepID=A0A2T5JMR0_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 5.740e-16
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:  177 VTFVLDSSVSLSWCFDDGFTGATGALM-------------------------ERRRRIDSAKRVRHIEFLRDLPVAIDADTVSQAWTVTSQLAERHRLTL 401
            ++ VLDSSV+L+WCF+D  T AT AL+                         ERR R+D  +R +   FLRDLPV++D +T  QAWT+T +LAER+RLTL
Sbjct:    1 MSLVLDSSVALTWCFEDERTLATLALLDQITETGATAPALWPLEVLNALTMAERRGRLDGTQRHQLAGFLRDLPVSLDQETADQAWTITMRLAERYRLTL 100          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A2T5JMS4_9PROT (Antitoxin n=1 Tax=Nitrosospira sp. Nsp5 TaxID=200119 RepID=A0A2T5JMS4_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    7 EEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGRP 177
            EEVLITR GK VARLVPAEP F+R +AR+A  G+ E  +G+T  GL IKDL+NEGRP
Sbjct:   24 EEVLITRHGKAVARLVPAEPGFNRARARQAARGLLEASQGVTLNGLNIKDLVNEGRP 80          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A7S6LYY5_9PROT (Antitoxin n=1 Tax=Nitrosomonas sp. H1_AOB3 TaxID=2741553 RepID=A0A7S6LYY5_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 8.430e-15
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 EEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGRP 177
            EEV+ITR GK VARLVPA+  FDR KAR+A   I   R+G+T G +KIKDLINEGRP
Sbjct:   24 EEVVITRHGKAVARLVPAQEQFDRTKARQAAVNITARRRGITLGNIKIKDLINEGRP 80          
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Match: A0A537A9X1_9PROT (Antitoxin n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A9X1_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 8.430e-15
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    7 EEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKIKDLINEGR 174
            EEV+ITRRGK VARL+P    FDREKA +AV GI   R G+T GGLKIKDL+NEGR
Sbjct:   24 EEVVITRRGKVVARLIPGTSGFDREKAAQAVAGILARRVGVTLGGLKIKDLVNEGR 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18821.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E344E284.600e-2078.95type II toxin-antitoxin system prevent-host-death ... [more]
A0A537QRE5_9PROT1.040e-1944.55Type II toxin-antitoxin system VapC family toxin n... [more]
A0A369XLQ5_9PROT1.050e-1952.00Ribonuclease VapC n=1 Tax=Candidatus Accumulibacte... [more]
A0A369XJS6_9PROT1.300e-1975.44Antitoxin n=1 Tax=Candidatus Accumulibacter phosph... [more]
A0A537QRI4_9PROT1.330e-1670.69Antitoxin n=1 Tax=Alphaproteobacteria bacterium Ta... [more]
UPI001BACA0071.880e-1670.91type II toxin-antitoxin system prevent-host-death ... [more]
A0A2T5JMR0_9PROT5.740e-1644.00Putative nucleic acid-binding protein n=1 Tax=Nitr... [more]
A0A2T5JMS4_9PROT1.500e-1566.67Antitoxin n=1 Tax=Nitrosospira sp. Nsp5 TaxID=2001... [more]
A0A7S6LYY5_9PROT8.430e-1566.67Antitoxin n=1 Tax=Nitrosomonas sp. H1_AOB3 TaxID=2... [more]
A0A537A9X1_9PROT8.430e-1569.64Antitoxin n=1 Tax=Betaproteobacteria bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18821contigP-wetherbeei_contig18821:845..1325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120956.JHZK01000005_gene2336
PFAMsPhdYeFM_antitox
Model size481
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.84e-13
EggNOG OGsCOG4118@1|root,COG4118@2|Bacteria,1NH4W@1224|Proteobacteria,2UKC0@28211|Alphaproteobacteria
DescriptionAntitoxin component of a toxin-antitoxin (TA) module
Cds size180
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.1037524-CDS-P-wetherbeei_contig18821:844..10241683186156.1037524-CDS-P-wetherbeei_contig18821:844..1024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18821 845..1024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.1141655-UTR-P-wetherbeei_contig18821:1024..13251683186156.1141655-UTR-P-wetherbeei_contig18821:1024..1325Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18821 1025..1325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18821.2.1prot_P-wetherbeei_contig18821.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18821 845..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18821.2.1

>prot_P-wetherbeei_contig18821.2.1 ID=prot_P-wetherbeei_contig18821.2.1|Name=mRNA_P-wetherbeei_contig18821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
RREEVLITRRGKPVARLVPAEPVFDREKARRAVEGIRETRKGLTPGGLKI
KDLINEGRP*
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mRNA from alignment at P-wetherbeei_contig18821:845..1325+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18821.2.1 ID=mRNA_P-wetherbeei_contig18821.2.1|Name=mRNA_P-wetherbeei_contig18821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=481bp|location=Sequence derived from alignment at P-wetherbeei_contig18821:845..1325+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAGAGAGGAAGTCCTGATTACCCGGCGCGGCAAGCCAGTGGCGCGTCT GGTGCCCGCTGAACCCGTATTCGACCGGGAAAAGGCGCGCCGTGCGGTAG AGGGCATTCGCGAAACGCGAAAAGGCCTCACGCCCGGTGGTCTCAAGATC AAGGATTTGATCAATGAAGGTCGACCGTGACCTTTGTGCTGGATAGTTCT GTTAGCCTGAGTTGGTGCTTTGATGATGGGTTCACGGGCGCTACCGGCGC ATTGATGGAACGCCGACGCCGAATTGATTCCGCCAAGCGGGTTAGACACA TCGAATTCCTGCGCGATCTTCCAGTTGCTATTGATGCTGACACCGTAAGC CAAGCCTGGACCGTAACTTCCCAACTGGCCGAACGCCACCGCCTGACGCT ATAGACGCCGCCTATCTGGAACTGGCGTTGCGGCTGGGATTGCCGCTTGC GACGCTGGACCGGGATTTGCGTAGCGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18821:845..1325+

>mRNA_P-wetherbeei_contig18821.2.1 ID=mRNA_P-wetherbeei_contig18821.2.1|Name=mRNA_P-wetherbeei_contig18821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig18821:845..1325+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAGAGAGGAAGTCCTGATTACCCGGCGCGGCAAGCCAGTGGCGCGTCT
GGTGCCCGCTGAACCCGTATTCGACCGGGAAAAGGCGCGCCGTGCGGTAG
AGGGCATTCGCGAAACGCGAAAAGGCCTCACGCCCGGTGGTCTCAAGATC
AAGGATTTGATCAATGAAGGTCGACCGTGA
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