mRNA_P-wetherbeei_contig18808.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18808.1.1
Unique NamemRNA_P-wetherbeei_contig18808.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A7S2WW38_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW38_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.720e-8
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICLD+V+  Q   L++C H++C+ CIL+WSEV N CP CK
Sbjct:   73 CGICLDQVE--QRGRLESCQHVFCFGCILQWSEVVNTCPLCK 112
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A2P2J5H4_RHIMU (Uncharacterized protein MANES_08G113500 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J5H4_RHIMU)

HSP 1 Score: 56.6 bits (135), Expect = 3.480e-8
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 CSICLDEVDKSQ-AATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICL E +K +   TL+ CSH +C+ CI++WS+V +RCPCCK
Sbjct:  168 CGICLSEENKRRFRGTLNCCSHYFCFACIMEWSKVESRCPCCK 210
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A7S2KPG2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPG2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.490e-8
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICL+   +   A +DNC H++C+TCI KWSE  N CP CK
Sbjct:  158 CCICLEVPTQENEARVDNCEHIFCFTCIEKWSERENTCPLCK 199
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: D7G8F9_ECTSI (Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAA-------TLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICL+++  +           LD CSH YCYTCIL+WS++TN+CP CK
Sbjct:  706 CMICLEKLSDAAEGGGAKLLGLLDACSHRYCYTCILEWSKITNKCPQCK 754
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A6H5K8F6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAA-------TLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICL+++  +           LD CSH YCYTCIL+WS++TN+CP CK
Sbjct:  639 CMICLEKLSDAAEGGGSKLLGLLDACSHRYCYTCILEWSKITNKCPQCK 687
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: B8CB72_THAPS (RING-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB72_THAPS)

HSP 1 Score: 54.3 bits (129), Expect = 2.280e-7
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 CSICLDEVDK-SQAATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C ICLD     +Q ATL+ C+H +C+ CI +W+   NRCPCCK
Sbjct:  147 CPICLDNPPSPTQTATLNGCTHKFCFDCIDRWANTENRCPCCK 189
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A8C4ZQX7_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZQX7_GADMO)

HSP 1 Score: 53.1 bits (126), Expect = 2.460e-7
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCP 117
            C +CL        ATL+NC H +C TCIL+WS++ N CP
Sbjct:   27 CPVCLSPFSGQSVATLENCQHAFCLTCILEWSKIANSCP 65
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: A0A1E7FRL3_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRL3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.260e-7
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C IC+ +V+ +  A++++CSH +C+ CI KWSE  N+CP CK
Sbjct:  186 CCICMCDVEPNDLASINSCSHQFCFGCIEKWSERENKCPLCK 227
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: UPI0011B7C434 (PHD and RING finger domain-containing protein 1-like isoform X1 n=2 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B7C434)

HSP 1 Score: 53.1 bits (126), Expect = 5.270e-7
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 1 
Query:    1 CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCP 117
            C +CL        ATL+NC H +C TCIL+WS++ N CP
Sbjct:   27 CPVCLSPFSGQSVATLENCQHAFCLTCILEWSKIANSCP 65
[Close]
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Match: L8H6S4_ACACA (Zinc finger, C3HC4 type (RING finger) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6S4_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 5.830e-7
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 CSICLDEVDKSQ---AATLDNCSHLYCYTCILKWSEVTNRCPCCK 126
            C+ICLD+           L+ CSH++CY+CIL+WS V N CP CK
Sbjct:   11 CAICLDKAGNQGPQGTGELNGCSHIFCYSCILEWSNVANSCPLCK 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WW38_9STRA1.720e-854.76Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A2P2J5H4_RHIMU3.480e-853.49Uncharacterized protein MANES_08G113500 n=1 Tax=Rh... [more]
A0A7S2KPG2_9STRA6.490e-852.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7G8F9_ECTSI1.210e-748.98Splicing factor, arginine/serine-rich 2,rnap inter... [more]
A0A6H5K8F6_9PHAE1.210e-748.98RING-type domain-containing protein n=1 Tax=Ectoca... [more]
B8CB72_THAPS2.280e-751.16RING-type domain-containing protein n=1 Tax=Thalas... [more]
A0A8C4ZQX7_GADMO2.460e-748.72Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
A0A1E7FRL3_9STRA4.260e-747.62RING-type domain-containing protein n=1 Tax=Fragil... [more]
UPI0011B7C4345.270e-748.72PHD and RING finger domain-containing protein 1-li... [more]
L8H6S4_ACACA5.830e-748.89Zinc finger, C3HC4 type (RING finger) domain conta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18808contigP-wetherbeei_contig18808:8..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3694.POPTR_0005s02090.1
PFAMsPHD,zf-RING_2
Model size126
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016590,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031010,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070603,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons2
Evalue1.19e-09
EggNOG OGsKOG4430@1|root,KOG4430@2759|Eukaryota,37PEN@33090|Viridiplantae,3GBFG@35493|Streptophyta,4JENH@91835|fabids
DescriptionPHD and RING finger domain-containing protein
Cds size126
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.8477025-CDS-P-wetherbeei_contig18808:7..381683186155.8477025-CDS-P-wetherbeei_contig18808:7..38Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18808 8..38 -
1683186155.8587978-CDS-P-wetherbeei_contig18808:191..2861683186155.8587978-CDS-P-wetherbeei_contig18808:191..286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18808 192..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18808.1.1prot_P-wetherbeei_contig18808.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18808 8..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18808.1.1

>prot_P-wetherbeei_contig18808.1.1 ID=prot_P-wetherbeei_contig18808.1.1|Name=mRNA_P-wetherbeei_contig18808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
CSICLDEVDKSQAATLDNCSHLYCYTCILKWSEVTNRCPCCK
back to top

mRNA from alignment at P-wetherbeei_contig18808:8..286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18808.1.1 ID=mRNA_P-wetherbeei_contig18808.1.1|Name=mRNA_P-wetherbeei_contig18808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig18808:8..286- (Phaeothamnion wetherbeei SAG_119_79)
TGCAGCATCTGCCTGGACGAAGTGGACAAGTCCCAGGCAGCTACGCTAGA
CAACTGCAGCCACCTCTACTGCTACACCTGTATTCTAAAGTGGAGGTGAG
AAAAGCAAAAGTGCGGATCCCGTGTGTCCTCCTCGCTAATCAAGATGCAG
TTAGCCGAAAGCGTCTGATTTGCTCGCTTTGACACTCTCTGCTCTCTCCT
CCGCCCTTTCGCCTGCACCATTTTATTAATCCCTTTACGCCGTTGCAGCG
AGGTGACCAATCGGTGCCCTTGCTGCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18808:8..286-

>mRNA_P-wetherbeei_contig18808.1.1 ID=mRNA_P-wetherbeei_contig18808.1.1|Name=mRNA_P-wetherbeei_contig18808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig18808:8..286- (Phaeothamnion wetherbeei SAG_119_79)
TGCAGCATCTGCCTGGACGAAGTGGACAAGTCCCAGGCAGCTACGCTAGA
CAACTGCAGCCACCTCTACTGCTACACCTGTATTCTAAAGTGGAGCGAGG
TGACCAATCGGTGCCCTTGCTGCAAG
back to top