mRNA_P-wetherbeei_contig18749.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18749.1.1
Unique NamemRNA_P-wetherbeei_contig18749.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18749.1.1 vs. uniprot
Match: A0A7Z9PR67_9BACT (Type II secretion system protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PR67_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.980e-5
Identity = 27/88 (30.68%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    7 HGMSLSEVVLSIFILSLALLGLVGAMHFGMTANQHASNITTALSYARQFIEYIRGGNLPFQLGTSSTLPPSSSGINDVANTFVDLNTP 270
             G +L EV++SI +L++ALLG++G++ +G   +     ++ A   AR  + Y++   L   +  +   P + SG+ND   TF  L+ P
Sbjct:    4 RGFTLVEVLVSITLLAIALLGVMGSIAYGTRHSTSGEQLSEATHLARSILSYVQEATLLDTVELAQPWPTNGSGLNDDDTTFRQLDDP 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18749.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9PR67_9BACT6.980e-530.68Type II secretion system protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18749contigP-wetherbeei_contig18749:424..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categorysignal peptide
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.3710704-UTR-P-wetherbeei_contig18749:423..4351683186154.3710704-UTR-P-wetherbeei_contig18749:423..435Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18749 424..435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.3810754-CDS-P-wetherbeei_contig18749:435..8491683186154.3810754-CDS-P-wetherbeei_contig18749:435..849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18749 436..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18749.1.1prot_P-wetherbeei_contig18749.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18749 436..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18749.1.1

>prot_P-wetherbeei_contig18749.1.1 ID=prot_P-wetherbeei_contig18749.1.1|Name=mRNA_P-wetherbeei_contig18749.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MSLSEVVLSIFILSLALLGLVGAMHFGMTANQHASNITTALSYARQFIEY
IRGGNLPFQLGTSSTLPPSSSGINDVANTFVDLNTPIGASTNGLPVDPQF
SRNIQCAFVNVTGENTVAPAYAWKANLREVIVTIRWSD
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mRNA from alignment at P-wetherbeei_contig18749:424..849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18749.1.1 ID=mRNA_P-wetherbeei_contig18749.1.1|Name=mRNA_P-wetherbeei_contig18749.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig18749:424..849+ (Phaeothamnion wetherbeei SAG_119_79)
AAACGGCACGGTATGAGTTTAAGCGAAGTTGTTCTATCGATCTTCATCCT
GAGCTTGGCCTTGCTCGGTCTGGTGGGAGCCATGCACTTTGGCATGACTG
CAAACCAGCACGCCAGCAACATTACCACAGCACTCTCCTACGCTCGGCAG
TTCATTGAGTACATTCGTGGGGGCAATCTCCCTTTCCAACTCGGGACTTC
CTCGACCCTGCCTCCGAGCAGCAGCGGCATCAACGACGTCGCTAACACCT
TTGTCGACCTAAATACCCCGATCGGCGCCTCTACCAATGGACTCCCCGTA
GACCCTCAGTTCTCCAGGAATATCCAATGCGCATTTGTTAACGTCACTGG
GGAAAACACGGTGGCTCCCGCATATGCGTGGAAGGCGAATTTGCGAGAAG
TCATCGTCACCATCCGTTGGTCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18749:424..849+

>mRNA_P-wetherbeei_contig18749.1.1 ID=mRNA_P-wetherbeei_contig18749.1.1|Name=mRNA_P-wetherbeei_contig18749.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig18749:424..849+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTAAGCGAAGTTGTTCTATCGATCTTCATCCTGAGCTTGGCCTT
GCTCGGTCTGGTGGGAGCCATGCACTTTGGCATGACTGCAAACCAGCACG
CCAGCAACATTACCACAGCACTCTCCTACGCTCGGCAGTTCATTGAGTAC
ATTCGTGGGGGCAATCTCCCTTTCCAACTCGGGACTTCCTCGACCCTGCC
TCCGAGCAGCAGCGGCATCAACGACGTCGCTAACACCTTTGTCGACCTAA
ATACCCCGATCGGCGCCTCTACCAATGGACTCCCCGTAGACCCTCAGTTC
TCCAGGAATATCCAATGCGCATTTGTTAACGTCACTGGGGAAAACACGGT
GGCTCCCGCATATGCGTGGAAGGCGAATTTGCGAGAAGTCATCGTCACCA
TCCGTTGGTCGGAC
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