mRNA_P-wetherbeei_contig18681.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18681.1.1
Unique NamemRNA_P-wetherbeei_contig18681.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18681.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18681contigP-wetherbeei_contig18681:581..1102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1333856.L686_01925
PFAMsDUF3859
Model size522
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.2e-09
EggNOG OGs2EM8B@1|root,33EXE@2|Bacteria,1NN8R@1224|Proteobacteria,1TFWC@1236|Gammaproteobacteria,1Z3AH@136846|Pseudomonas stutzeri group
DescriptionDomain of unknown function (DUF3859)
Cds size522
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.4208422-CDS-P-wetherbeei_contig18681:580..11021683186152.4208422-CDS-P-wetherbeei_contig18681:580..1102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18681 581..1102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18681.1.1prot_P-wetherbeei_contig18681.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18681 581..1102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18681.1.1

>prot_P-wetherbeei_contig18681.1.1 ID=prot_P-wetherbeei_contig18681.1.1|Name=mRNA_P-wetherbeei_contig18681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MKDLRKMTVIAILIVASSGAHAQAPTIEGVRILEQGIYEAQTDRSRQPTN
GVWPVYDVRLNKATTYIPMRRHLRFGFRYVLQGAPPGKAATVELVTRYPA
PGMLDPKTQLWRTESRYQLEMRVGIPRYREFQFVEDDELVPGMWVFEFWQ
GAKKLGEQHFCVGIDDEITRHAEE
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mRNA from alignment at P-wetherbeei_contig18681:581..1102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18681.1.1 ID=mRNA_P-wetherbeei_contig18681.1.1|Name=mRNA_P-wetherbeei_contig18681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig18681:581..1102- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGATCTTCGTAAAATGACAGTCATCGCTATTTTGATCGTCGCGAG
TTCGGGGGCTCACGCACAAGCGCCGACAATCGAAGGGGTGCGTATCCTGG
AACAAGGAATCTACGAAGCCCAGACTGACCGCTCGCGTCAGCCAACAAAC
GGAGTATGGCCCGTCTACGACGTTCGTCTCAACAAGGCGACGACGTATAT
CCCGATGCGACGACACCTTCGTTTCGGTTTCAGGTATGTCCTGCAAGGTG
CGCCGCCCGGTAAGGCTGCGACGGTCGAACTTGTCACGCGCTACCCAGCA
CCCGGCATGCTGGACCCGAAGACTCAGCTCTGGCGAACGGAAAGTCGCTA
TCAGTTGGAAATGCGAGTCGGCATCCCCCGCTATCGCGAATTTCAGTTTG
TAGAGGACGATGAACTGGTTCCCGGGATGTGGGTATTCGAATTTTGGCAG
GGGGCCAAGAAACTGGGCGAGCAGCACTTCTGTGTCGGGATCGATGATGA
GATCACACGACACGCAGAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18681:581..1102-

>mRNA_P-wetherbeei_contig18681.1.1 ID=mRNA_P-wetherbeei_contig18681.1.1|Name=mRNA_P-wetherbeei_contig18681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig18681:581..1102- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGATCTTCGTAAAATGACAGTCATCGCTATTTTGATCGTCGCGAG
TTCGGGGGCTCACGCACAAGCGCCGACAATCGAAGGGGTGCGTATCCTGG
AACAAGGAATCTACGAAGCCCAGACTGACCGCTCGCGTCAGCCAACAAAC
GGAGTATGGCCCGTCTACGACGTTCGTCTCAACAAGGCGACGACGTATAT
CCCGATGCGACGACACCTTCGTTTCGGTTTCAGGTATGTCCTGCAAGGTG
CGCCGCCCGGTAAGGCTGCGACGGTCGAACTTGTCACGCGCTACCCAGCA
CCCGGCATGCTGGACCCGAAGACTCAGCTCTGGCGAACGGAAAGTCGCTA
TCAGTTGGAAATGCGAGTCGGCATCCCCCGCTATCGCGAATTTCAGTTTG
TAGAGGACGATGAACTGGTTCCCGGGATGTGGGTATTCGAATTTTGGCAG
GGGGCCAAGAAACTGGGCGAGCAGCACTTCTGTGTCGGGATCGATGATGA
GATCACACGACACGCAGAAGAG
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