mRNA_P-wetherbeei_contig18446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18446.1.1
Unique NamemRNA_P-wetherbeei_contig18446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18446contigP-wetherbeei_contig18446:48..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size772
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionPeroxin-3 domain
Ec32 orthologEc-25_001480.2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.1153944-UTR-P-wetherbeei_contig18446:47..741683186146.1153944-UTR-P-wetherbeei_contig18446:47..74Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18446 48..74 +
1683186146.1363056-UTR-P-wetherbeei_contig18446:632..8191683186146.1363056-UTR-P-wetherbeei_contig18446:632..819Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18446 633..819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.1264894-CDS-P-wetherbeei_contig18446:74..6321683186146.1264894-CDS-P-wetherbeei_contig18446:74..632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18446 75..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18446.1.1prot_P-wetherbeei_contig18446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18446 75..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18446.1.1

>prot_P-wetherbeei_contig18446.1.1 ID=prot_P-wetherbeei_contig18446.1.1|Name=mRNA_P-wetherbeei_contig18446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MLAEMWDAAESPNFGYAVADSLDATFNVLSCRIRGQLFVAAAAHLPPERT
APAALPAVDATAATSSSAAAPPPLPPPASAASDAGAVVADAPSAEGAAEE
TATAVAAAAAAIAVPETAAVETEPALLTPPLATVVSQLKGILAEMLDTSD
LNRYPQAIAGLASVSELCASVFGQLEGLQPPPLQA*
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mRNA from alignment at P-wetherbeei_contig18446:48..819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18446.1.1 ID=mRNA_P-wetherbeei_contig18446.1.1|Name=mRNA_P-wetherbeei_contig18446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=772bp|location=Sequence derived from alignment at P-wetherbeei_contig18446:48..819+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCGACGGAGGTTTCGGTGCAGGAGATGCTGGCAGAGATGTGGGACGC
TGCCGAAAGCCCCAATTTCGGGTACGCGGTCGCGGACTCACTCGACGCCA
CCTTCAACGTGCTCTCGTGCCGCATCCGGGGGCAGCTTTTCGTCGCTGCC
GCGGCGCACCTGCCGCCGGAGCGGACAGCGCCGGCAGCACTTCCAGCTGT
GGACGCAACAGCAGCAACAAGTTCCTCGGCTGCCGCGCCGCCACCACTGC
CGCCGCCGGCATCAGCTGCCTCTGACGCGGGAGCAGTAGTAGCAGACGCA
CCAAGCGCGGAGGGCGCCGCGGAAGAAACAGCAACAGCGGTGGCAGCAGC
AGCAGCTGCTATAGCAGTGCCAGAAACGGCGGCGGTGGAGACCGAGCCAG
CGCTTTTGACCCCACCGCTGGCGACGGTGGTGTCGCAGCTGAAGGGCATC
TTGGCGGAGATGCTCGACACGAGCGACCTCAATCGCTACCCGCAGGCCAT
CGCTGGCCTCGCCTCCGTCTCGGAACTCTGCGCCAGCGTCTTCGGACAGC
TGGAGGGGCTCCAGCCGCCGCCCCTGCAGGCTTGAAACAGGGATAGGTGG
CGGTGGTGGCAGCGGCGGCGGCGGCTGCGGCGGATTGCTTGCAAAGGGTG
ACGGTGTGCCGTGAACTTGTCCTCTCCGGGTTCTCGGGGTGGTTACAGCT
GCTGATAGGTCAAGCATCCTCTTACCCGGGCAACAACTCCTCATTTTAAA
CATAAACATATGATACCATAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18446:48..819+

>mRNA_P-wetherbeei_contig18446.1.1 ID=mRNA_P-wetherbeei_contig18446.1.1|Name=mRNA_P-wetherbeei_contig18446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig18446:48..819+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCAGAGATGTGGGACGCTGCCGAAAGCCCCAATTTCGGGTACGC
GGTCGCGGACTCACTCGACGCCACCTTCAACGTGCTCTCGTGCCGCATCC
GGGGGCAGCTTTTCGTCGCTGCCGCGGCGCACCTGCCGCCGGAGCGGACA
GCGCCGGCAGCACTTCCAGCTGTGGACGCAACAGCAGCAACAAGTTCCTC
GGCTGCCGCGCCGCCACCACTGCCGCCGCCGGCATCAGCTGCCTCTGACG
CGGGAGCAGTAGTAGCAGACGCACCAAGCGCGGAGGGCGCCGCGGAAGAA
ACAGCAACAGCGGTGGCAGCAGCAGCAGCTGCTATAGCAGTGCCAGAAAC
GGCGGCGGTGGAGACCGAGCCAGCGCTTTTGACCCCACCGCTGGCGACGG
TGGTGTCGCAGCTGAAGGGCATCTTGGCGGAGATGCTCGACACGAGCGAC
CTCAATCGCTACCCGCAGGCCATCGCTGGCCTCGCCTCCGTCTCGGAACT
CTGCGCCAGCGTCTTCGGACAGCTGGAGGGGCTCCAGCCGCCGCCCCTGC
AGGCTTGA
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