mRNA_P-wetherbeei_contig18417.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18417.2.1
Unique NamemRNA_P-wetherbeei_contig18417.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A7X9KM41_9ACTN (DEAD/DEAH box helicase (Fragment) n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KM41_9ACTN)

HSP 1 Score: 241 bits (614), Expect = 9.900e-79
Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCT-TPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MADH VL+ FSPAVREWFA SFP PTP Q+ GWPAI    HTLVCAPTGSGKTLTAFL+S+DRL T +  P DPKART+VLY+SPLRALAFD+EKNLRSPLMGI+LAAERLGV F +P VAMRTGDTS  DRQ L RRP DLLITTPESLYLMLTS
Sbjct:    1 MADHPVLEGFSPAVREWFAASFPTPTPPQIQGWPAIRSGQHTLVCAPTGSGKTLTAFLSSLDRLVTPSATPVDPKARTQVLYISPLRALAFDIEKNLRSPLMGIRLAAERLGVPFVEPTVAMRTGDTSPKDRQALARRPVDLLITTPESLYLMLTS 156          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A3C2B998_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B998_9ACTN)

HSP 1 Score: 243 bits (619), Expect = 2.520e-74
Identity = 126/155 (81.29%), Postives = 131/155 (84.52%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MADH VL  FSPAVREWF  SFP PTP QV GWPAI    HTLVCAPTGSGKTLTAFL+SIDRL TTPPP D KARTRVLY+SPLRALAFDVEKNLRSPLMGI+LAAERL V F +P VAMRTGDTS+ DR  L RRP DLLITTPESLYLMLTS
Sbjct:    1 MADHPVLHGFSPAVREWFGASFPGPTPPQVQGWPAIRNGDHTLVCAPTGSGKTLTAFLSSIDRLVTTPPP-DAKARTRVLYISPLRALAFDVEKNLRSPLMGIRLAAERLDVPFLEPTVAMRTGDTSTKDRAALARRPVDLLITTPESLYLMLTS 154          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A6I3WWQ7_9ACTN (DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=A0A6I3WWQ7_9ACTN)

HSP 1 Score: 247 bits (630), Expect = 6.110e-73
Identity = 127/155 (81.94%), Postives = 132/155 (85.16%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MADH  LQ FSPAVR WFA SFPEPTPAQV GW AI G  HTL+CAPTGSGKTL AFL+ IDRL TTP PE   ARTRVLY+SPLRALAFDVEKNLR+PLMGIQLAAERLG  F QP+VAMRTGDTS  DRQ LIRRPPDLLITTPESLYLMLTS
Sbjct:    1 MADHDALQRFSPAVRAWFATSFPEPTPAQVHGWSAITGGQHTLICAPTGSGKTLAAFLSCIDRLVTTPLPEK-AARTRVLYISPLRALAFDVEKNLRAPLMGIQLAAERLGEPFVQPVVAMRTGDTSPKDRQALIRRPPDLLITTPESLYLMLTS 154          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A6N2DIA1_9ACTN (DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DIA1_9ACTN)

HSP 1 Score: 243 bits (619), Expect = 1.860e-71
Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MA H VL+AFSPAVREWFA+SFPEPT  QV GWP I    +TL+CAPTGSGKTLTAFLASIDRL T+P P +   RTRVLY+SPLRALAFD+EKNLRSPL+GI LAAERLG  F +P VAMRTGDTSSSDRQKL+RRPPDLLITTPESLYLMLTS
Sbjct:    1 MAGHPVLEAFSPAVREWFASSFPEPTAPQVQGWPLIAAGRNTLICAPTGSGKTLTAFLASIDRLVTSPTPPERTHRTRVLYISPLRALAFDIEKNLRSPLVGIGLAAERLGEPFVKPEVAMRTGDTSSSDRQKLVRRPPDLLITTPESLYLMLTS 155          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A7W0KXJ7_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXJ7_9ACTN)

HSP 1 Score: 241 bits (614), Expect = 2.640e-71
Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MADH VL++FSPAVR WFA +FPEPT AQV GWP I    HTL+CAPTGSGKTL AFL+SID L T P PEDPK RTRVLY+SPLRALAFDVEKNLR+PL GI LAAER+G +   P VAMRTGDTSS DRQ+L+RRPPDLLITTPESLYLMLTS
Sbjct:    1 MADHPVLESFSPAVRAWFAAAFPEPTAAQVQGWPPIAAGDHTLICAPTGSGKTLAAFLSSIDALATRPMPEDPKRRTRVLYISPLRALAFDVEKNLRAPLAGIGLAAERIGETVLTPEVAMRTGDTSSQDRQRLVRRPPDLLITTPESLYLMLTS 155          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A7K1CUF5_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1CUF5_9ACTN)

HSP 1 Score: 229 bits (584), Expect = 1.050e-70
Identity = 111/150 (74.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query:   16 VLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            +L+AFSPAVREWFA++FPEPT  Q+ GWPAI+G  HTL+C+PTGSGKTLTAFL+S+DRL TT  P + K RTRVLY+SPLRALAFDVEKNLR+PL+GI  AAERLG+++  P+V MRTGDTS+ +RQ+L RRPPDLLITTPESLYLMLTS
Sbjct:    1 MLEAFSPAVREWFASNFPEPTAPQIQGWPAIVGGAHTLICSPTGSGKTLTAFLSSLDRLITTEAPSE-KQRTRVLYVSPLRALAFDVEKNLRAPLVGIGHAAERLGIAYNAPVVGMRTGDTSARERQQLARRPPDLLITTPESLYLMLTS 149          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A7W0QGI6_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QGI6_9ACTN)

HSP 1 Score: 222 bits (566), Expect = 1.150e-70
Identity = 111/155 (71.61%), Postives = 128/155 (82.58%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            +ADH  L+ FSPAVR WFA SF  PT AQV GWP I     TL+CAPTGSGKTLTAFLA++D L T+ P ++   RTRVLY+SPLRALAFDVEKNLRSPL GI+LAA+R G+S  +P+VAMRTGDT S++RQ+LIRRPPDLLITTPESLYLMLTS
Sbjct:   45 IADHEALEPFSPAVRAWFATSFEAPTAAQVQGWPHIARGESTLICAPTGSGKTLTAFLAALDTLMTSEPSQERSHRTRVLYVSPLRALAFDVEKNLRSPLRGIELAADRTGLSVVEPVVAMRTGDTPSNERQRLIRRPPDLLITTPESLYLMLTS 199          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A7K1B6R8_9ACTN (DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B6R8_9ACTN)

HSP 1 Score: 239 bits (610), Expect = 3.030e-70
Identity = 121/150 (80.67%), Postives = 130/150 (86.67%), Query Frame = 1
Query:   16 VLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            +L  FSPAVR WF +SFPEPTP QV GWP I    HTL+CAPTGSGKTLTAFLASIDRL TT PP D KARTRVLY+SPLRALAFDVEKNLRSPLMGI LAAERLG +F +P+VAMRTGDTS+ DRQ L+RRPPDLLITTPESLYLMLTS
Sbjct:    1 MLDRFSPAVRAWFGSSFPEPTPPQVQGWPHIAAGSHTLICAPTGSGKTLTAFLASIDRLTTTSPP-DAKARTRVLYISPLRALAFDVEKNLRSPLMGIALAAERLGEAFVEPMVAMRTGDTSAKDRQALVRRPPDLLITTPESLYLMLTS 149          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A6J6K816_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6K816_9ZZZZ)

HSP 1 Score: 238 bits (606), Expect = 1.050e-69
Identity = 116/155 (74.84%), Postives = 136/155 (87.74%), Query Frame = 1
Query:    1 MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            MADH VL+AFSPAVREWFA++FPEPT  Q+ GWPAI+G  HTL+C+PTGSGKTLTAFL+S+DRL TT  P + K RTRVLY+SPLRALAFDVEKNLR+PL+GI  AAERLG+++  P+V MRTGDTS+ +RQ+L RRPPDLLITTPESLYLMLTS
Sbjct:    1 MADHKVLEAFSPAVREWFASNFPEPTAPQIQGWPAIVGGAHTLICSPTGSGKTLTAFLSSLDRLITTEAPPE-KQRTRVLYVSPLRALAFDVEKNLRAPLVGIGHAAERLGIAYNAPVVGMRTGDTSARERQQLGRRPPDLLITTPESLYLMLTS 154          
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Match: A0A6I2WV79_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I2WV79_9ACTN)

HSP 1 Score: 228 bits (580), Expect = 3.730e-69
Identity = 113/152 (74.34%), Postives = 128/152 (84.21%), Query Frame = 1
Query:   10 HSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGSGKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPLMGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLYLMLTS 465
            H VL AFSPAV  WFA SFPEPT AQV GWP I+   HTL+CAPTGSGKTLTAFL +IDRL TTP P D +ARTRVLY+SPLRALAFD+EKNLR+PL GI+LAAERLGV F +P V +RTGDT + DRQ+++R PPDLLITTPESLYL+LTS
Sbjct:   11 HPVLGAFSPAVGTWFATSFPEPTAAQVQGWPRIMAGEHTLICAPTGSGKTLTAFLGAIDRLVTTPAP-DTRARTRVLYISPLRALAFDIEKNLRAPLQGIKLAAERLGVPFIEPTVGLRTGDTPARDRQRMLRNPPDLLITTPESLYLLLTS 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18417.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KM41_9ACTN9.900e-7978.85DEAD/DEAH box helicase (Fragment) n=2 Tax=Actinoba... [more]
A0A3C2B998_9ACTN2.520e-7481.29DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimic... [more]
A0A6I3WWQ7_9ACTN6.110e-7381.94DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=... [more]
A0A6N2DIA1_9ACTN1.860e-7179.35DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. T... [more]
A0A7W0KXJ7_9ACTN2.640e-7177.42DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimic... [more]
A0A7K1CUF5_9ACTN1.050e-7074.00DEAD/DEAH box helicase (Fragment) n=1 Tax=Actinomy... [more]
A0A7W0QGI6_9ACTN1.150e-7071.61DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimic... [more]
A0A7K1B6R8_9ACTN3.030e-7080.67DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=... [more]
A0A6J6K816_9ZZZZ1.050e-6974.84Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I2WV79_9ACTN3.730e-6974.34DEAD/DEAH box helicase (Fragment) n=1 Tax=Actinomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18417contigP-wetherbeei_contig18417:884..1348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_09490
PFAMsDEAD,Helicase_C
Model size465
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03724,ko:K06877
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.1e-70
EggNOG OGsCOG1201@1|root,COG1201@2|Bacteria,2I6VR@201174|Actinobacteria,4CNBF@84992|Acidimicrobiia
DescriptionDEAD-like helicases superfamily
Cds size465
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.384826-CDS-P-wetherbeei_contig18417:883..13481683186145.384826-CDS-P-wetherbeei_contig18417:883..1348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18417 884..1348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18417.2.1prot_P-wetherbeei_contig18417.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18417 884..1348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18417.2.1

>prot_P-wetherbeei_contig18417.2.1 ID=prot_P-wetherbeei_contig18417.2.1|Name=mRNA_P-wetherbeei_contig18417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MADHSVLQAFSPAVREWFANSFPEPTPAQVTGWPAIIGRGHTLVCAPTGS
GKTLTAFLASIDRLCTTPPPEDPKARTRVLYLSPLRALAFDVEKNLRSPL
MGIQLAAERLGVSFQQPIVAMRTGDTSSSDRQKLIRRPPDLLITTPESLY
LMLTS
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mRNA from alignment at P-wetherbeei_contig18417:884..1348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18417.2.1 ID=mRNA_P-wetherbeei_contig18417.2.1|Name=mRNA_P-wetherbeei_contig18417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig18417:884..1348+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACCACTCGGTGCTCCAGGCGTTCTCGCCGGCGGTGCGGGAGTG GTTCGCGAACTCGTTTCCGGAGCCGACGCCCGCTCAGGTCACCGGCTGGC CGGCAATCATCGGGCGCGGGCACACGCTGGTCTGCGCCCCCACCGGCAGC GGCAAGACGCTCACCGCCTTCCTCGCCTCGATCGACCGGCTGTGCACCAC GCCACCGCCGGAGGACCCCAAGGCGCGCACTCGGGTGCTGTACCTCTCGC CGCTGCGAGCCCTGGCCTTCGACGTCGAGAAGAACCTGCGCTCGCCGCTG ATGGGCATCCAGCTCGCGGCCGAGCGACTGGGCGTGTCGTTCCAGCAGCC GATCGTCGCGATGCGCACGGGCGACACGTCGTCCAGCGATCGCCAGAAGC TCATCCGCCGCCCACCCGACCTGCTGATCACCACACCCGAGAGCCTCTAC CTCATGCTCACGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18417:884..1348+

>mRNA_P-wetherbeei_contig18417.2.1 ID=mRNA_P-wetherbeei_contig18417.2.1|Name=mRNA_P-wetherbeei_contig18417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig18417:884..1348+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACCACTCGGTGCTCCAGGCGTTCTCGCCGGCGGTGCGGGAGTG
GTTCGCGAACTCGTTTCCGGAGCCGACGCCCGCTCAGGTCACCGGCTGGC
CGGCAATCATCGGGCGCGGGCACACGCTGGTCTGCGCCCCCACCGGCAGC
GGCAAGACGCTCACCGCCTTCCTCGCCTCGATCGACCGGCTGTGCACCAC
GCCACCGCCGGAGGACCCCAAGGCGCGCACTCGGGTGCTGTACCTCTCGC
CGCTGCGAGCCCTGGCCTTCGACGTCGAGAAGAACCTGCGCTCGCCGCTG
ATGGGCATCCAGCTCGCGGCCGAGCGACTGGGCGTGTCGTTCCAGCAGCC
GATCGTCGCGATGCGCACGGGCGACACGTCGTCCAGCGATCGCCAGAAGC
TCATCCGCCGCCCACCCGACCTGCTGATCACCACACCCGAGAGCCTCTAC
CTCATGCTCACGTCG
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