mRNA_P-wetherbeei_contig18410.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18410.2.1
Unique NamemRNA_P-wetherbeei_contig18410.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18410.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18410contigP-wetherbeei_contig18410:389..855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD29230
PFAMsPPR,PPR_2,PPR_3
Model size336
Max annot lvl2759|Eukaryota
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000735
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size309
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.2391644-CDS-P-wetherbeei_contig18410:388..5021683186145.2391644-CDS-P-wetherbeei_contig18410:388..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18410 389..502 -
1683186145.2578855-CDS-P-wetherbeei_contig18410:633..8281683186145.2578855-CDS-P-wetherbeei_contig18410:633..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18410 634..828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.2787442-UTR-P-wetherbeei_contig18410:828..8551683186145.2787442-UTR-P-wetherbeei_contig18410:828..855Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18410 829..855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18410.2.1prot_P-wetherbeei_contig18410.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18410 389..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18410.2.1

>prot_P-wetherbeei_contig18410.2.1 ID=prot_P-wetherbeei_contig18410.2.1|Name=mRNA_P-wetherbeei_contig18410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MEPIHKVKPDNTSYSSLINALAEDGQSRAACALLKEMTDCSGLAPNVVAF
GTAIKACARGGDWRQALDILDGMPAVGVQPNIIAVNTALAACARAGRAAE
AIG
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mRNA from alignment at P-wetherbeei_contig18410:389..855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18410.2.1 ID=mRNA_P-wetherbeei_contig18410.2.1|Name=mRNA_P-wetherbeei_contig18410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=467bp|location=Sequence derived from alignment at P-wetherbeei_contig18410:389..855- (Phaeothamnion wetherbeei SAG_119_79)
GACAGGGCTCTTGAGCTCCTTCGGAGCATGGAACCAATCCACAAAGTAAA
GCCCGACAACACCAGCTACTCATCGCTGATAAACGCACTGGCGGAGGACG
GCCAATCGAGGGCGGCGTGCGCCCTGCTGAAGGAAATGACGGACTGCAGT
GGTCTGGCGCCCAACGTCGTCGCCTTTGGAACCGCAATAAAGGCTTGCGC
CCGCGGCGGAGATTGGCGCCAGGTGCGCTGAGTGGAACTGTGTCAAAACG
CTTCTTTGTTGATCAATTCTATCGGACGGGATATAACGCGAAGCCAGGAT
GCACGCCTGGCTTGTAATCTAATTGCTCCTGTGAGCCGTCCGTCCATGAG
CAGGCGCTCGACATACTGGATGGGATGCCTGCAGTCGGCGTGCAGCCTAA
CATCATCGCCGTCAACACCGCCCTCGCCGCCTGTGCCCGGGCTGGCCGCG
CAGCAGAAGCTATCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18410:389..855-

>mRNA_P-wetherbeei_contig18410.2.1 ID=mRNA_P-wetherbeei_contig18410.2.1|Name=mRNA_P-wetherbeei_contig18410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18410:389..855- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACCAATCCACAAAGTAAAGCCCGACAACACCAGCTACTCATCGCT
GATAAACGCACTGGCGGAGGACGGCCAATCGAGGGCGGCGTGCGCCCTGC
TGAAGGAAATGACGGACTGCAGTGGTCTGGCGCCCAACGTCGTCGCCTTT
GGAACCGCAATAAAGGCTTGCGCCCGCGGCGGAGATTGGCGCCAGGCGCT
CGACATACTGGATGGGATGCCTGCAGTCGGCGTGCAGCCTAACATCATCG
CCGTCAACACCGCCCTCGCCGCCTGTGCCCGGGCTGGCCGCGCAGCAGAA
GCTATCGGT
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