mRNA_P-wetherbeei_contig184.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig184.6.1
Unique NamemRNA_P-wetherbeei_contig184.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig184.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig184contigP-wetherbeei_contig184:9857..11127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1271
Hectar predicted targeting categorysignal peptide
Exons1
Cds size873
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.8054354-UTR-P-wetherbeei_contig184:9856..101491683186144.8054354-UTR-P-wetherbeei_contig184:9856..10149Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig184 9857..10149 +
1683186144.8206453-UTR-P-wetherbeei_contig184:11022..111271683186144.8206453-UTR-P-wetherbeei_contig184:11022..11127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig184 11023..11127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.8131561-CDS-P-wetherbeei_contig184:10149..110221683186144.8131561-CDS-P-wetherbeei_contig184:10149..11022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig184 10150..11022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig184.6.1prot_P-wetherbeei_contig184.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig184 10150..11022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig184.6.1

>prot_P-wetherbeei_contig184.6.1 ID=prot_P-wetherbeei_contig184.6.1|Name=mRNA_P-wetherbeei_contig184.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=291bp
MFFYSLASRVFLSPPLAAFLSGVSCLPFSLSSFIAIFSAVGVLRPGESLV
GQGLLHRWYQEVFLPKIQRRTRAMLETREQLRAAATARKMPRGTMGLAGR
AATSRMCLMPELGIEAWASISEETIARCLFKAGILPSSLQAELAGSHGKA
VHMPMLDSTFQQLGQMLRRLCLGGQQQPAEQLEREQSVVAEAILRYIPAT
LRSKAEAGPVWKIGTPLPGHCTPPFFLLAKNFLSTSALEESEESGEEEEE
PDVEEVAGAAGAGLPRLLFDQGDEGALWRLRRVKLAFMAA*
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mRNA from alignment at P-wetherbeei_contig184:9857..11127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig184.6.1 ID=mRNA_P-wetherbeei_contig184.6.1|Name=mRNA_P-wetherbeei_contig184.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1271bp|location=Sequence derived from alignment at P-wetherbeei_contig184:9857..11127+ (Phaeothamnion wetherbeei SAG_119_79)
TGACGGTCAAAGATTTTCAACAAGGAGAGATACAGCTGTCACGCAGCGGC
GCGCCGCTTGGTCCGTGTTTGTGGGTGTCGGAATTAGGCCGATATGACTT
GGTGCTCGTTCGATTTTCCGAAACGATTTTTCCGTCCTTGCATGTTGCGT
TTATTCGCTGCTCTGCTGTCTCCACCAGTCTTTCTTTCCATTTCAATCTA
ATATTATGGCAGGAGGCAGCTGCTGCTCTCCTGTGAATACGGTGGTACTT
GTTGCCGAAAGATATTCCTCACTCCTTCGCATAATTCCACCAAATGTTCT
TTTATTCACTTGCTTCCCGTGTTTTTCTTTCTCCTCCTCTTGCTGCGTTT
CTTTCGGGGGTTTCCTGCCTTCCCTTCTCCCTCTCCTCTTTCATTGCAAT
TTTTTCCGCAGTCGGTGTACTTCGACCAGGCGAAAGCTTGGTCGGACAAG
GTCTTCTTCACCGTTGGTACCAGGAGGTCTTCCTGCCGAAGATTCAGCGG
CGGACGAGGGCAATGCTAGAGACGCGCGAGCAGCTGCGTGCGGCGGCGAC
GGCGCGGAAGATGCCGCGTGGGACGATGGGGCTTGCGGGAAGGGCAGCCA
CGAGCCGCATGTGCTTGATGCCAGAACTTGGCATCGAGGCTTGGGCCTCA
ATTTCGGAGGAGACCATTGCCCGCTGCTTGTTCAAGGCCGGCATTCTGCC
GTCGTCGCTTCAGGCGGAGCTTGCCGGCTCGCACGGCAAGGCCGTGCACA
TGCCGATGTTGGACTCGACATTTCAACAGCTGGGCCAGATGCTTCGCCGC
CTCTGCCTCGGCGGACAGCAGCAGCCGGCGGAGCAACTGGAGCGGGAGCA
GAGCGTCGTGGCGGAGGCAATTCTGCGCTACATTCCGGCGACGCTGCGGA
GCAAGGCCGAGGCTGGGCCTGTCTGGAAGATTGGAACGCCATTGCCGGGG
CACTGCACGCCGCCATTTTTTCTGCTCGCAAAGAACTTCCTTTCTACTTC
CGCCTTGGAAGAATCTGAGGAGAGCGGTGAAGAAGAAGAGGAGCCTGACG
TAGAAGAGGTGGCGGGGGCTGCGGGAGCGGGGTTGCCGCGGCTGCTGTTT
GACCAGGGCGACGAGGGCGCATTGTGGCGGTTGAGGAGGGTCAAGCTGGC
CTTCATGGCCGCCTAGGAAAACAGGCAGGCGGTCATCCTCGCCTACCCTC
GCCATGATGCGGGAGGAAATTCAAGCGAGTCTCACACAGCGTAGAAGGCG
TACAACAAGCGATTTTGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig184:9857..11127+

>mRNA_P-wetherbeei_contig184.6.1 ID=mRNA_P-wetherbeei_contig184.6.1|Name=mRNA_P-wetherbeei_contig184.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig184:9857..11127+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTTTTATTCACTTGCTTCCCGTGTTTTTCTTTCTCCTCCTCTTGC
TGCGTTTCTTTCGGGGGTTTCCTGCCTTCCCTTCTCCCTCTCCTCTTTCA
TTGCAATTTTTTCCGCAGTCGGTGTACTTCGACCAGGCGAAAGCTTGGTC
GGACAAGGTCTTCTTCACCGTTGGTACCAGGAGGTCTTCCTGCCGAAGAT
TCAGCGGCGGACGAGGGCAATGCTAGAGACGCGCGAGCAGCTGCGTGCGG
CGGCGACGGCGCGGAAGATGCCGCGTGGGACGATGGGGCTTGCGGGAAGG
GCAGCCACGAGCCGCATGTGCTTGATGCCAGAACTTGGCATCGAGGCTTG
GGCCTCAATTTCGGAGGAGACCATTGCCCGCTGCTTGTTCAAGGCCGGCA
TTCTGCCGTCGTCGCTTCAGGCGGAGCTTGCCGGCTCGCACGGCAAGGCC
GTGCACATGCCGATGTTGGACTCGACATTTCAACAGCTGGGCCAGATGCT
TCGCCGCCTCTGCCTCGGCGGACAGCAGCAGCCGGCGGAGCAACTGGAGC
GGGAGCAGAGCGTCGTGGCGGAGGCAATTCTGCGCTACATTCCGGCGACG
CTGCGGAGCAAGGCCGAGGCTGGGCCTGTCTGGAAGATTGGAACGCCATT
GCCGGGGCACTGCACGCCGCCATTTTTTCTGCTCGCAAAGAACTTCCTTT
CTACTTCCGCCTTGGAAGAATCTGAGGAGAGCGGTGAAGAAGAAGAGGAG
CCTGACGTAGAAGAGGTGGCGGGGGCTGCGGGAGCGGGGTTGCCGCGGCT
GCTGTTTGACCAGGGCGACGAGGGCGCATTGTGGCGGTTGAGGAGGGTCA
AGCTGGCCTTCATGGCCGCCTAG
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