mRNA_P-wetherbeei_contig1829.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1829.1.1
Unique NamemRNA_P-wetherbeei_contig1829.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1829.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1829contigP-wetherbeei_contig1829:2..1722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1723
Hectar predicted targeting categorymitochondrion
Exons1
Cds size1719
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.7291605-CDS-P-wetherbeei_contig1829:3..17221683186141.7291605-CDS-P-wetherbeei_contig1829:3..1722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1829 4..1722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1829.1.1prot_P-wetherbeei_contig1829.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1829 4..1722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1829.1.1

>prot_P-wetherbeei_contig1829.1.1 ID=prot_P-wetherbeei_contig1829.1.1|Name=mRNA_P-wetherbeei_contig1829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=573bp
QLQQAAVGLLQRLLRGASVRRRGEMAALRAEKREGERLAVATAVAAGWLA
EMTVTALAEAAVTASLGAATAPALAHSCAASSSIAGASGADAAATKDRAE
QRAGAALPETAQMAEVAKSARGSSAAAEQHAAARTLQRGWRGSCPPRAAI
AVLPNRKDTVAAIAGADGAAGVAGAAGAEKLPADKSVGPGSSAEPVAAAA
AAEAPPAVSASVQAASQPPHVVGGDAAATVVQRRYRGFRAGRNGSPGAAT
CAPESNRCDVIAGTEGPSDTSPASAGKAGCDEIYGGSPSSEGCCIAANSA
EAAMPVSSTPVATAAGEAPAGPELPATAATAVAAGKQWDSKPAPTEPAAA
ATIQGAYRSRRAARGKVVAHIGATTSAEETGPAATAGKADTMASATERQA
EAVIAAATGAAAVVAAAAAAAAADTASATRQDDGDREDRDVTSRVKSLLA
GARKTAASAAVGAAVSHSEYLPEQNARAQDEAARAIQHRFRGFRLSRPGG
PGAPPKKKGSAPAAVVPKQKRPAEVASAAAPTKAANAATPSPSSTEAAAA
SSISAVAPAPPPETLAAVPAPPL
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mRNA from alignment at P-wetherbeei_contig1829:2..1722-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1829.1.1 ID=mRNA_P-wetherbeei_contig1829.1.1|Name=mRNA_P-wetherbeei_contig1829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1721bp|location=Sequence derived from alignment at P-wetherbeei_contig1829:2..1722- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGCAGCAAGCTGCTGTTGGGTTGCTGCAACGCCTGCTACGGGGTGC
CAGCGTCCGCCGCCGCGGCGAGATGGCGGCGCTGCGGGCGGAGAAGCGGG
AGGGGGAGCGGCTGGCGGTGGCGACGGCCGTTGCGGCGGGATGGCTTGCA
GAGATGACAGTGACTGCACTGGCAGAAGCGGCAGTGACAGCCTCTCTTGG
GGCGGCGACTGCCCCTGCCCTGGCTCATAGCTGTGCCGCCTCTTCATCGA
TCGCAGGAGCCTCGGGAGCGGACGCAGCTGCAACGAAGGATAGAGCGGAG
CAGCGAGCAGGAGCTGCACTTCCCGAAACGGCACAAATGGCAGAAGTTGC
GAAATCGGCACGCGGATCCTCCGCCGCTGCCGAACAGCACGCGGCGGCAA
GAACGCTGCAGCGCGGATGGAGGGGTAGCTGCCCTCCCAGGGCCGCCATA
GCGGTGCTGCCAAATCGCAAGGATACTGTCGCCGCAATTGCCGGAGCCGA
TGGAGCAGCCGGAGTCGCCGGAGCCGCCGGAGCCGAAAAATTACCGGCGG
ACAAATCAGTCGGTCCGGGTAGTTCGGCGGAACCGGTGGCAGCAGCGGCG
GCAGCGGAGGCACCACCGGCTGTGTCTGCCTCTGTACAGGCGGCGTCGCA
GCCGCCGCACGTTGTCGGCGGGGATGCCGCTGCCACGGTCGTGCAGCGTC
GCTATCGTGGGTTCAGGGCAGGGAGAAACGGGTCGCCGGGGGCCGCGACT
TGTGCTCCTGAGAGCAATCGTTGCGACGTTATTGCGGGCACGGAGGGGCC
TAGCGACACGAGCCCTGCATCCGCCGGTAAAGCAGGCTGCGACGAGATAT
ATGGGGGATCTCCTTCGTCAGAGGGGTGTTGCATCGCAGCGAACTCTGCG
GAGGCGGCGATGCCGGTGTCATCGACGCCGGTTGCGACGGCAGCCGGAGA
AGCACCTGCAGGGCCCGAGCTTCCAGCCACGGCAGCAACAGCAGTTGCTG
CGGGGAAACAATGGGACAGCAAGCCCGCACCTACCGAACCTGCGGCAGCG
GCCACAATCCAGGGAGCGTATCGCAGCAGGCGGGCGGCGCGTGGAAAGGT
GGTTGCCCATATCGGAGCAACAACTTCGGCGGAGGAAACCGGACCCGCGG
CAACGGCAGGAAAGGCTGATACCATGGCAAGTGCGACTGAAAGACAAGCA
GAGGCGGTGATAGCTGCGGCGACGGGAGCTGCTGCGGTTGTGGCGGCTGC
GGCAGCTGCGGCAGCGGCTGACACCGCATCAGCGACACGGCAGGACGACG
GCGACCGAGAGGACCGTGATGTCACTTCAAGAGTAAAGTCGTTACTGGCA
GGGGCGCGAAAGACGGCTGCAAGCGCGGCCGTCGGAGCTGCCGTATCGCA
CAGCGAATATCTGCCGGAGCAGAATGCACGTGCTCAAGACGAAGCGGCCA
GGGCGATTCAGCACCGCTTCCGGGGCTTTCGTTTATCCCGGCCTGGTGGT
CCCGGTGCGCCGCCGAAAAAGAAGGGGAGCGCTCCTGCAGCTGTTGTTCC
GAAGCAGAAAAGGCCGGCGGAGGTGGCATCAGCGGCCGCACCGACGAAAG
CGGCCAACGCTGCCACGCCTTCACCATCGTCCACTGAAGCGGCTGCTGCT
TCTTCCATTTCGGCGGTTGCGCCGGCGCCTCCGCCTGAAACGCTTGCTGC
CGTCCCCGCGCCTCCGCTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1829:2..1722-

>mRNA_P-wetherbeei_contig1829.1.1 ID=mRNA_P-wetherbeei_contig1829.1.1|Name=mRNA_P-wetherbeei_contig1829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1719bp|location=Sequence derived from alignment at P-wetherbeei_contig1829:2..1722- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGCAGCAAGCTGCTGTTGGGTTGCTGCAACGCCTGCTACGGGGTGC
CAGCGTCCGCCGCCGCGGCGAGATGGCGGCGCTGCGGGCGGAGAAGCGGG
AGGGGGAGCGGCTGGCGGTGGCGACGGCCGTTGCGGCGGGATGGCTTGCA
GAGATGACAGTGACTGCACTGGCAGAAGCGGCAGTGACAGCCTCTCTTGG
GGCGGCGACTGCCCCTGCCCTGGCTCATAGCTGTGCCGCCTCTTCATCGA
TCGCAGGAGCCTCGGGAGCGGACGCAGCTGCAACGAAGGATAGAGCGGAG
CAGCGAGCAGGAGCTGCACTTCCCGAAACGGCACAAATGGCAGAAGTTGC
GAAATCGGCACGCGGATCCTCCGCCGCTGCCGAACAGCACGCGGCGGCAA
GAACGCTGCAGCGCGGATGGAGGGGTAGCTGCCCTCCCAGGGCCGCCATA
GCGGTGCTGCCAAATCGCAAGGATACTGTCGCCGCAATTGCCGGAGCCGA
TGGAGCAGCCGGAGTCGCCGGAGCCGCCGGAGCCGAAAAATTACCGGCGG
ACAAATCAGTCGGTCCGGGTAGTTCGGCGGAACCGGTGGCAGCAGCGGCG
GCAGCGGAGGCACCACCGGCTGTGTCTGCCTCTGTACAGGCGGCGTCGCA
GCCGCCGCACGTTGTCGGCGGGGATGCCGCTGCCACGGTCGTGCAGCGTC
GCTATCGTGGGTTCAGGGCAGGGAGAAACGGGTCGCCGGGGGCCGCGACT
TGTGCTCCTGAGAGCAATCGTTGCGACGTTATTGCGGGCACGGAGGGGCC
TAGCGACACGAGCCCTGCATCCGCCGGTAAAGCAGGCTGCGACGAGATAT
ATGGGGGATCTCCTTCGTCAGAGGGGTGTTGCATCGCAGCGAACTCTGCG
GAGGCGGCGATGCCGGTGTCATCGACGCCGGTTGCGACGGCAGCCGGAGA
AGCACCTGCAGGGCCCGAGCTTCCAGCCACGGCAGCAACAGCAGTTGCTG
CGGGGAAACAATGGGACAGCAAGCCCGCACCTACCGAACCTGCGGCAGCG
GCCACAATCCAGGGAGCGTATCGCAGCAGGCGGGCGGCGCGTGGAAAGGT
GGTTGCCCATATCGGAGCAACAACTTCGGCGGAGGAAACCGGACCCGCGG
CAACGGCAGGAAAGGCTGATACCATGGCAAGTGCGACTGAAAGACAAGCA
GAGGCGGTGATAGCTGCGGCGACGGGAGCTGCTGCGGTTGTGGCGGCTGC
GGCAGCTGCGGCAGCGGCTGACACCGCATCAGCGACACGGCAGGACGACG
GCGACCGAGAGGACCGTGATGTCACTTCAAGAGTAAAGTCGTTACTGGCA
GGGGCGCGAAAGACGGCTGCAAGCGCGGCCGTCGGAGCTGCCGTATCGCA
CAGCGAATATCTGCCGGAGCAGAATGCACGTGCTCAAGACGAAGCGGCCA
GGGCGATTCAGCACCGCTTCCGGGGCTTTCGTTTATCCCGGCCTGGTGGT
CCCGGTGCGCCGCCGAAAAAGAAGGGGAGCGCTCCTGCAGCTGTTGTTCC
GAAGCAGAAAAGGCCGGCGGAGGTGGCATCAGCGGCCGCACCGACGAAAG
CGGCCAACGCTGCCACGCCTTCACCATCGTCCACTGAAGCGGCTGCTGCT
TCTTCCATTTCGGCGGTTGCGCCGGCGCCTCCGCCTGAAACGCTTGCTGC
CGTCCCCGCGCCTCCGCTG
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