mRNA_P-wetherbeei_contig18255.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18255.1.1
Unique NamemRNA_P-wetherbeei_contig18255.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: D7G0U6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U6_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 9.960e-57
Identity = 87/122 (71.31%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 GDSENDLGAGRASYAGADDLDTLDRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            GD E++LGAGRASY   DDLDTLDRRRTEELRLI +FD+++INPRRE WF+VDTKWL+ WAKFVRGEG PPG ISN  L++ DL+T   GL ++VDYRGVNP VWFLY+EMYGKD A ++CR
Sbjct:   56 GDGEDELGAGRASYG--DDLDTLDRRRTEELRLIGEFDSANINPRRECWFIVDTKWLQTWAKFVRGEGPPPGRISNKGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR 175          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A6U1BH02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BH02_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.710e-36
Identity = 60/119 (50.42%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 ENDLGAGRASYAGADDLDTLDRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            E+DLGA        ++L+ L+ RR+ EL L+SKFD + INPRRE WFL+DT W+  W+ ++ G+   PG ISN +L EAD RT +  L  K DYRG++P++W+++VE+YGKD APE+CR
Sbjct:   27 EDDLGA-----LTPEELELLEERRSAELALVSKFDKTEINPRRECWFLIDTTWIRDWSLYMEGKRDSPGRISNLNLFEADERTVKRKLVPKQDYRGLSPLMWYIFVELYGKDAAPELCR 140          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A7S2DAT7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAT7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.350e-29
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 GDSENDLGAGRASYAGADDLDTLDRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            G+ E++LGA        ++   L+ RR  E  L+ KFD + IN RRE WFL++T W + W K++ G+  PP  ISN +L E   +  +P L+A  DYRGV+  VW+++VE+YG D APEICR
Sbjct:   31 GEWEDELGA-----LSPEEKALLEERRYAEYELVKKFDVTEINIRRECWFLINTIWFDEWLKYMSGKVEPPDRISNLNLYEEGGQKLKPNLQAVKDYRGVSATVWYIFVELYGSDNAPEICR 147          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A7S3M225_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M225_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-21
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   76 RRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAP--PGHISNTSLLEA-DLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            R+ +EL+L+ KFD S+IN  +E WFLVD+ WL +W+ FV G      PG +S   LL+A D+      L    DYRGV P+V+F+++E+YGKD +PE+CR
Sbjct:   41 RKKQELKLVKKFDKSAINVAKECWFLVDSDWLNKWSAFVNGGDGEDSPGPLSTKELLDAQDIPLLN--LMPIRDYRGVPPIVYFIFLELYGKDSSPELCR 138          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: D7FUK4_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK4_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.510e-20
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   67 LDRRRTEELRLISKFDTSSINPR-RESWFLVDTKWLERWAKFVRGEGAPPGHISNTSLL----EADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            LDRRR  EL LI KFD  +INP   E WF++D KW+  W KFV G+ + PG ISN +L     + D  T+   L            VWF++ E+YG DEAP ICR
Sbjct:  207 LDRRRATELALIKKFDRPTINPHVGEFWFVIDAKWINSWVKFVMGQASAPGPISNLNLYPPDGDGDQSTSAKSL------------VWFIFQEIYGTDEAPGICR 299          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A2D4CFD6_PYTIN (DUSP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFD6_PYTIN)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-15
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   70 DRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAP------PGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            + RR EE  L+ K+DT  +  R E+WF++++ WL+ W  ++  E  P      PG ++N SL +      + GL A   YRGVNP+V+ LY E+YG   A  I R
Sbjct:   52 EERRREERALVLKYDTRELK-RGEAWFIIESSWLDAWMSYILSEDDPDCPVVKPGPLTNYSLFDPKEYCLKKGLEATKHYRGVNPMVYALYAEIYGTAGAKPIAR 155          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: C5K6W1_PERM5 (DUSP domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6W1_PERM5)

HSP 1 Score: 75.5 bits (184), Expect = 1.860e-13
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 1
Query:   34 ASYAGADDLDTLDRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYG 339
            A +  +D  +TL  R   E   + KFDT  + P  + +++V TKW++ W +F+  E   PG ISN  L   DL+T  P      DYRG+N  +W  ++  YG
Sbjct:   85 AKFMASDTEETLRLRARYEAEFVRKFDTVRLPPG-DIYYIVSTKWIDSWKRFISEEKELPGPISNNLLFHDDLKTLLPRFVRSKDYRGINQRIWSFWLARYG 185          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A6H5L668_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L668_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.620e-12
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  235 LLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            L++ DL+T   GL ++VDYRGVNP VWFLY+EMYGKD A ++CR
Sbjct:   30 LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR 73          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A8K1CKP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKP5_PYTOL)

HSP 1 Score: 70.1 bits (170), Expect = 8.530e-12
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1
Query:   70 DRRRTEELRLISKFDTSSINPRRESWFLVDTKWLERWAKFVRGEGAP------PGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPEICR 366
            + RR  E  +I + DT  +  R E+WF+++T WL+ W  ++  E  P      PG ++N +L +      +  L A   YRGVNP+V+ +Y E+YG   A  I R
Sbjct:   47 EERRRLEREMILRHDTRELK-RGEAWFIIETSWLDAWMAYILSEDDPDCPVVKPGPLTNYTLFDPKEYCLKRDLVATKHYRGVNPMVYAMYAELYGTAGAKPIVR 150          
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Match: A0A6P7T8S8_OCTVU (Ubiquitinyl hydrolase 1 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7T8S8_OCTVU)

HSP 1 Score: 53.5 bits (127), Expect = 1.260e-5
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 1
Query:  139 ESWFLVDTKWLERWAKFVR----------GEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGVNPVVWFLYVEMYGKDEAPE 357
            ++W+LVDTKWL++W K+V            + A PG I N +L + D+ T +  L  ++DY  +    W   V  YG  E  E
Sbjct:   28 DTWYLVDTKWLKQWKKYVGFDSWDSYSAGDQSANPGPIDNKTLFKEDMCTLKEHLIDELDYVLLPTEGWNKLVSWYGTVEGQE 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G0U6_ECTSI9.960e-5771.31DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U1BH02_9STRA6.710e-3650.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DAT7_9STRA2.350e-2944.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3M225_9STRA1.270e-2147.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D7FUK4_ECTSI5.510e-2045.71DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2D4CFD6_PYTIN1.040e-1538.10DUSP domain-containing protein n=1 Tax=Pythium ins... [more]
C5K6W1_PERM51.860e-1335.29DUSP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5L668_9PHAE2.620e-1263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CKP5_PYTOL8.530e-1234.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6P7T8S8_OCTVU1.260e-533.73Ubiquitinyl hydrolase 1 n=2 Tax=Octopus TaxID=6643... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18255contigP-wetherbeei_contig18255:284..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0U6
PFAMsDUSP
Model size393
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.63e-57
EggNOG OGs2BXEB@1|root,2S2F5@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C19, ubiquitin-specific peptidase, DUSP domain
Ec32 orthologEc-23_002250.1
DescriptionDomain in ubiquitin-specific proteases.
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.0467682-CDS-P-wetherbeei_contig18255:283..5601683186141.0467682-CDS-P-wetherbeei_contig18255:283..560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18255 284..560 -
1683186141.0688035-CDS-P-wetherbeei_contig18255:1051..11671683186141.0688035-CDS-P-wetherbeei_contig18255:1051..1167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18255 1052..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18255.1.1prot_P-wetherbeei_contig18255.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18255 284..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18255.1.1

>prot_P-wetherbeei_contig18255.1.1 ID=prot_P-wetherbeei_contig18255.1.1|Name=mRNA_P-wetherbeei_contig18255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
GDSENDLGAGRASYAGADDLDTLDRRRTEELRLISKFDTSSINPRRESWF
LVDTKWLERWAKFVRGEGAPPGHISNTSLLEADLRTARPGLRAKVDYRGV
NPVVWFLYVEMYGKDEAPEICRSDSGRTGR*
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mRNA from alignment at P-wetherbeei_contig18255:284..1167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18255.1.1 ID=mRNA_P-wetherbeei_contig18255.1.1|Name=mRNA_P-wetherbeei_contig18255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=884bp|location=Sequence derived from alignment at P-wetherbeei_contig18255:284..1167- (Phaeothamnion wetherbeei SAG_119_79)
GGTGACTCCGAAAACGACTTGGGAGCTGGCAGGGCGTCGTACGCCGGAGC AGATGACCTCGACACATTGGACCGCCGCCGCACCGAGGAGCTGCGTCTCA TCAGCAAGTTTGACACGTAAGCCGTGTTCTTTCCCTTTGGTGCTCCGCAA CGGGTCGAATTAAATATTGCCGTGTTTCCTTGCGAAACTTGTTATCCACT TCCGTGGGGAACGGACGGTGAAGTGTAAGCAAAACCACGAGCTCCAGTCG TGCACTGCGCCATCTCTTTCTTTTTCTCCCAGCCTTCCTCTCATTTATTT CCTCCCTTTGTGCCGCCGGTGTGGCATCTTCATTGTAGGAGCTGGGCGTC CTTTAACACTCCCCGTTTTTCCGCCAATCTGTATTTCAACTACCCCTTCC TCTGTTCCCCCCCTTAAATCCTGGCCTGCCCCGGCGTCATCGCAACGCGA CGGAAATGCCGCGACATGAGCAATGCGACATAAAACGTTTCAAACACATC GCGGCGATCATAAAACAATGTAACACGGTGCACAAACTGTGAAACGAAAA TGGAAACCTGGGAATATTGGGAAAACTGGAATCTGAAACCGCTGAAAACT GCTGCAGCTCGTCCATCAACCCGCGGCGGGAGAGCTGGTTCCTCGTGGAC ACCAAGTGGCTGGAGCGGTGGGCCAAGTTTGTCCGCGGCGAGGGCGCGCC GCCGGGCCACATCTCCAACACCAGCCTGCTGGAGGCCGACTTGCGGACGG CGCGGCCGGGCCTGCGGGCCAAGGTGGACTACCGCGGCGTCAATCCCGTC GTGTGGTTCCTCTATGTCGAGATGTACGGCAAGGACGAGGCGCCCGAGAT TTGCAGGTCAGATTCTGGAAGGACAGGGAGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18255:284..1167-

>mRNA_P-wetherbeei_contig18255.1.1 ID=mRNA_P-wetherbeei_contig18255.1.1|Name=mRNA_P-wetherbeei_contig18255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18255:284..1167- (Phaeothamnion wetherbeei SAG_119_79)
GGTGACTCCGAAAACGACTTGGGAGCTGGCAGGGCGTCGTACGCCGGAGC
AGATGACCTCGACACATTGGACCGCCGCCGCACCGAGGAGCTGCGTCTCA
TCAGCAAGTTTGACACCTCGTCCATCAACCCGCGGCGGGAGAGCTGGTTC
CTCGTGGACACCAAGTGGCTGGAGCGGTGGGCCAAGTTTGTCCGCGGCGA
GGGCGCGCCGCCGGGCCACATCTCCAACACCAGCCTGCTGGAGGCCGACT
TGCGGACGGCGCGGCCGGGCCTGCGGGCCAAGGTGGACTACCGCGGCGTC
AATCCCGTCGTGTGGTTCCTCTATGTCGAGATGTACGGCAAGGACGAGGC
GCCCGAGATTTGCAGGTCAGATTCTGGAAGGACAGGGAGATAA
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