mRNA_P-wetherbeei_contig18171.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18171.1.1
Unique NamemRNA_P-wetherbeei_contig18171.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18171.1.1 vs. uniprot
Match: A0A2D9CFD7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9CFD7_9BACT)

HSP 1 Score: 216 bits (551), Expect = 1.560e-58
Identity = 139/419 (33.17%), Postives = 212/419 (50.60%), Query Frame = 1 
Query:    1 LYELSKEFKRNGIYFDFKHNNNSISQINTLTKTYSLTNDFKEAKREYEEEYGFSDYKIDSIIDKEVSNFVKEGTHYPSTITFFDPPNDEEDRIILSQKLKHIDQTTSYASFKHSKYYLGFLGKITDFRPTNKIQGVGIYRIDNINISEANQKILEINKHLDILHNKCPYALPFLKFFDEMNITYDILEGCWGVKEFHFEFPDYMLEKEE----------DIPHYSRWSGLCDSHSNTTSKSFYGSEELCQLIRNNIVSSKFRVRDDVPGHIEVVYPKKTNFHLGHITSFITSYCALNTIEQLMIMEPSKVFKVNMDGIYYLEHDFTIKQPFRVK-EGKELGGPVAERFL-NIYPEELNQKLSSNFP-------RENHRTELHTGAGGCGKTHKQLTHTGLVRKSFIAPSWKLARNKESE 1200
            L ++ +E      YF F  N N IS I T+ K Y + +  ++  RE+E+E+    YKID+I + ++  F+ +GTH+  T  F + P+      I +  L+H D   +Y+ F  SKYY GFLGKITDFR  +     G Y ID++++S +N K    N+ +    NK  Y    L+F  ++   + +  G +G K   F+F D ML K+           +I +Y+ W G C S +   S   YG+ E    IR+        V D+V     + YPK+   +L HI+  IT+Y  L  +EQL+ M+ SK+++V +DGIYY +H F +   F+ K +         E +L N++    N  L +          RE +++ L  G GG GKT+  +   GLV   +IAP WKLAR  E E
Sbjct:  415 LEKIKRELLDKNQYFIFGRNKNGISYIQTIDKIYRVGDKLRDTCREFEKEWNMESYKIDAIKNPDLQKFINKGTHFNGTTDFKELPD------ISNPSLRHDDMKKAYSQFSTSKYYDGFLGKITDFRRVDNFNEKGYYFIDSLDLSNSNPKFKFYNEKMGWFRNKNIYTDAELRFLRDVGGKFIVKYGAFGTKT-RFKFSDDMLNKKHTIFKSNKKKINISYYALWVGKCASMNYNKSFCMYGTREYFNNIRDE---HNHIVYDEVYNEATISYPKQQLKNLMHISGQITAYQRLVIMEQLLEMDESKIYRVCVDGIYYDDHQFKLNPVFQDKRDSMTFNNSPTENYLSNVFS---NSGLDTEIEGIRMGNEREYYQSLLELGQGGSGKTYSNIRDYGLVDAIYIAPPWKLARATEKE 820
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18171.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9CFD7_9BACT1.560e-5833.17Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18171contigP-wetherbeei_contig18171:31..1332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1251
Hectar predicted targeting categoryother localisation
Exons2
Cds size1251
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.1209865-CDS-P-wetherbeei_contig18171:30..5461683186138.1209865-CDS-P-wetherbeei_contig18171:30..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18171 31..546 -
1683186138.1316817-CDS-P-wetherbeei_contig18171:597..13321683186138.1316817-CDS-P-wetherbeei_contig18171:597..1332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18171 598..1332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18171.1.1prot_P-wetherbeei_contig18171.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18171 31..1332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18171.1.1

>prot_P-wetherbeei_contig18171.1.1 ID=prot_P-wetherbeei_contig18171.1.1|Name=mRNA_P-wetherbeei_contig18171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=417bp
LYELSKEFKRNGIYFDFKHNNNSISQINTLTKTYSLTNDFKEAKREYEEE
YGFSDYKIDSIIDKEVSNFVKEGTHYPSTITFFDPPNDEEDRIILSQKLK
HIDQTTSYASFKHSKYYLGFLGKITDFRPTNKIQGVGIYRIDNINISEAN
QKILEINKHLDILHNKCPYALPFLKFFDEMNITYDILEGCWGVKEFHFEF
PDYMLEKEEDIPHYSRWSGLCDSHSNTTSKSFYGSEELCQLIRNNIVSSK
FRVRDDVPGHIEVVYPKKTNFHLGHITSFITSYCALNTIEQLMIMEPSKV
FKVNMDGIYYLEHDFTIKQPFRVKEGKELGGPVAERFLNIYPEELNQKLS
SNFPRENHRTELHTGAGGCGKTHKQLTHTGLVRKSFIAPSWKLARNKESE
YSCRCSVRVRVRVRVRV
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mRNA from alignment at P-wetherbeei_contig18171:31..1332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18171.1.1 ID=mRNA_P-wetherbeei_contig18171.1.1|Name=mRNA_P-wetherbeei_contig18171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig18171:31..1332- (Phaeothamnion wetherbeei SAG_119_79)
TTGTATGAATTATCAAAGGAATTCAAGAGAAATGGAATATATTTTGATTT
TAAACATAACAATAATTCAATATCCCAAATCAACACTCTAACAAAGACAT
ATTCCCTTACAAATGATTTCAAAGAAGCAAAAAGGGAATATGAGGAAGAA
TATGGATTCTCTGATTATAAAATTGACTCTATTATTGATAAAGAAGTATC
AAATTTTGTCAAGGAGGGAACACATTATCCATCAACAATAACATTTTTTG
ACCCACCAAATGATGAAGAAGACAGAATTATCCTTTCTCAAAAATTAAAA
CATATAGACCAAACGACTTCTTATGCCTCATTTAAACATTCAAAGTATTA
TCTTGGTTTCTTAGGAAAAATTACCGACTTTAGACCTACAAATAAAATTC
AAGGTGTTGGAATATATAGAATTGATAATATCAACATTTCTGAAGCAAAT
CAAAAAATTTTAGAGATAAATAAACATCTTGACATTCTACACAATAAATG
CCCTTATGCTTTGCCTTTTCTCAAGTTTTTTGATGAAATGAATATTACAT
ACGACATTCTTGAAGGGTGTTGGGGTGTAAAGGAGTTTCATTTTGAATTT
CCTGATTATATGCTTGAAAAGGAAGAAGATATTCCTCACTATTCAAGATG
GTCTGGATTATGTGATTCACACTCAAATACAACAAGCAAGTCATTTTATG
GAAGTGAAGAATTATGTCAATTAATCAGAAATAACGTTCCAGAAAATGTT
CGGGTCAATTATTATTCCGAAACAAAAATAAATGAGATTGTATCAAGTAA
ATTTCGCGTCCGGGACGATGTTCCCGGTCATATTGAAGTTGTTTATCCCA
AGAAAACAAATTTTCACTTAGGACATATAACTTCATTCATTACGTCTTAT
TGTGCTTTGAATACGATAGAACAACTTATGATTATGGAACCTTCAAAAGT
ATTTAAGGTAAATATGGATGGTATTTATTACTTGGAACACGATTTTACAA
TTAAACAACCATTTAGAGTTAAAGAAGGAAAAGAATTGGGAGGTCCAGTT
GCTGAACGCTTCCTGAATATTTATCCAGAAGAATTAAATCAAAAATTAAG
TTCAAATTTTCCACGTGAAAATCACAGAACTGAACTCCACACAGGTGCCG
GAGGGTGTGGCAAAACGCACAAACAATTGACTCATACAGGATTAGTTCGT
AAATCATTTATTGCTCCATCTTGGAAATTAGCGAGAAACAAAGAAAGTGA
ATATTCTTGTCGTTGTAGTGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGG
TT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18171:31..1332-

>mRNA_P-wetherbeei_contig18171.1.1 ID=mRNA_P-wetherbeei_contig18171.1.1|Name=mRNA_P-wetherbeei_contig18171.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1251bp|location=Sequence derived from alignment at P-wetherbeei_contig18171:31..1332- (Phaeothamnion wetherbeei SAG_119_79)
TTGTATGAATTATCAAAGGAATTCAAGAGAAATGGAATATATTTTGATTT
TAAACATAACAATAATTCAATATCCCAAATCAACACTCTAACAAAGACAT
ATTCCCTTACAAATGATTTCAAAGAAGCAAAAAGGGAATATGAGGAAGAA
TATGGATTCTCTGATTATAAAATTGACTCTATTATTGATAAAGAAGTATC
AAATTTTGTCAAGGAGGGAACACATTATCCATCAACAATAACATTTTTTG
ACCCACCAAATGATGAAGAAGACAGAATTATCCTTTCTCAAAAATTAAAA
CATATAGACCAAACGACTTCTTATGCCTCATTTAAACATTCAAAGTATTA
TCTTGGTTTCTTAGGAAAAATTACCGACTTTAGACCTACAAATAAAATTC
AAGGTGTTGGAATATATAGAATTGATAATATCAACATTTCTGAAGCAAAT
CAAAAAATTTTAGAGATAAATAAACATCTTGACATTCTACACAATAAATG
CCCTTATGCTTTGCCTTTTCTCAAGTTTTTTGATGAAATGAATATTACAT
ACGACATTCTTGAAGGGTGTTGGGGTGTAAAGGAGTTTCATTTTGAATTT
CCTGATTATATGCTTGAAAAGGAAGAAGATATTCCTCACTATTCAAGATG
GTCTGGATTATGTGATTCACACTCAAATACAACAAGCAAGTCATTTTATG
GAAGTGAAGAATTATGTCAATTAATCAGAAATAACATTGTATCAAGTAAA
TTTCGCGTCCGGGACGATGTTCCCGGTCATATTGAAGTTGTTTATCCCAA
GAAAACAAATTTTCACTTAGGACATATAACTTCATTCATTACGTCTTATT
GTGCTTTGAATACGATAGAACAACTTATGATTATGGAACCTTCAAAAGTA
TTTAAGGTAAATATGGATGGTATTTATTACTTGGAACACGATTTTACAAT
TAAACAACCATTTAGAGTTAAAGAAGGAAAAGAATTGGGAGGTCCAGTTG
CTGAACGCTTCCTGAATATTTATCCAGAAGAATTAAATCAAAAATTAAGT
TCAAATTTTCCACGTGAAAATCACAGAACTGAACTCCACACAGGTGCCGG
AGGGTGTGGCAAAACGCACAAACAATTGACTCATACAGGATTAGTTCGTA
AATCATTTATTGCTCCATCTTGGAAATTAGCGAGAAACAAAGAAAGTGAA
TATTCTTGTCGTTGTAGTGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT
T
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