mRNA_P-wetherbeei_contig18146.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18146.1.1
Unique NamemRNA_P-wetherbeei_contig18146.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: A0A349B3X2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B3X2_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 1.330e-24
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:    1 RDSMSTRDYVQRMHFHECLSGEGAGRYISHTH--DDDAPGHSHEPRRVASLRPDGGYVEALGPSWGAERPPALLAHWATVDAELRAHLAARPTPAHELTVWRLQLYCGCVVERTAHQTHRTIHDAFS 375
            RD+ ST   +QR HFHE + G+ AGRY+SH H  DD   GH H   +V   R DGG  + LGPS G   P  + A+   V   L    A R    HEL  WRL+L+CGCVVER+AH +H+    AF+
Sbjct:   28 RDAESTHAALQRTHFHEIVLGDRAGRYLSHCHGADDGGVGHVHPGEQVFPARADGGNWQQLGPSLGTATPAPVAANARRVFETL----AQRRPADHELVRWRLRLFCGCVVERSAHLSHKAAAAAFT 150
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: UPI00111C6A5B (hypothetical protein n=1 Tax=Mycobacterium szulgai TaxID=1787 RepID=UPI00111C6A5B)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-11
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  247 RAHLAARPTPAHELTVWRLQLYCGCVVERTAHQTHRTIHDAFSG 378
            R H    PTP HEL VWRL+LYCG  +ERTAH++H T+H AFSG
Sbjct:  130 RIHALLTPTPPHELMVWRLRLYCGHTIERTAHRSHLTVHSAFSG 173
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: A0A255GP02_9ACTN (Uncharacterized protein n=2 Tax=Propionibacteriaceae TaxID=31957 RepID=A0A255GP02_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 3.610e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  250 AHLAARPTPAHELTVWRLQLYCGCVVERTAHQTHRTIHDAF 372
            A L  RPTP  +L  WRL+LY G VVERTAH TH+T+H AF
Sbjct:  131 ARLLGRPTPPQQLMRWRLRLYFGHVVERTAHYTHKTLHAAF 171
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: A0A5R8MK92_9ACTN (Uncharacterized protein n=3 Tax=Nonomuraea TaxID=83681 RepID=A0A5R8MK92_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 3.500e-6
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  268 PTPAHELTVWRLQLYCGCVVERTAHQTHRTIHDAFSG 378
            P   HEL  WRL+LYCG VVE+ +H TH+T+H AF+G
Sbjct:  137 PKQPHELMRWRLRLYCGHVVEKQSHYTHKTLHSAFTG 173
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: UPI0011C43C1F (hypothetical protein n=1 Tax=Actinomadura harenae TaxID=2483351 RepID=UPI0011C43C1F)

HSP 1 Score: 52.8 bits (125), Expect = 1.260e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  268 PTPAHELTVWRLQLYCGCVVERTAHQTHRTIHDAFS 375
            P  +HEL  WRL+LYCG +VE+ AH TH+T+H AF+
Sbjct:  137 PKQSHELMRWRLRLYCGHMVEKQAHYTHKTLHSAFT 172
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BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Match: F5XGL4_MICPN (Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) TaxID=1032480 RepID=F5XGL4_MICPN)

HSP 1 Score: 50.4 bits (119), Expect = 1.270e-5
Identity = 19/28 (67.86%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  295 WRLQLYCGCVVERTAHQTHRTIHDAFSG 378
            WRL+LYCG V+ERT+H TH+T+H+AF+G
Sbjct:    3 WRLRLYCGHVLERTSHYTHKTLHNAFTG 30
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18146.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A349B3X2_9ACTN1.330e-2445.67Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI00111C6A5B4.800e-1163.64hypothetical protein n=1 Tax=Mycobacterium szulgai... [more]
A0A255GP02_9ACTN3.610e-763.41Uncharacterized protein n=2 Tax=Propionibacteriace... [more]
A0A5R8MK92_9ACTN3.500e-659.46Uncharacterized protein n=3 Tax=Nonomuraea TaxID=8... [more]
UPI0011C43C1F1.260e-558.33hypothetical protein n=1 Tax=Actinomadura harenae ... [more]
F5XGL4_MICPN1.270e-567.86Uncharacterized protein n=1 Tax=Microlunatus phosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18146contigP-wetherbeei_contig18146:39..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.221144-CDS-P-wetherbeei_contig18146:38..4071683186137.221144-CDS-P-wetherbeei_contig18146:38..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18146 39..407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.229082-UTR-P-wetherbeei_contig18146:407..4161683186137.229082-UTR-P-wetherbeei_contig18146:407..416Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18146 408..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18146.1.1prot_P-wetherbeei_contig18146.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18146 39..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18146.1.1

>prot_P-wetherbeei_contig18146.1.1 ID=prot_P-wetherbeei_contig18146.1.1|Name=mRNA_P-wetherbeei_contig18146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MSTRDYVQRMHFHECLSGEGAGRYISHTHDDDAPGHSHEPRRVASLRPDG
GYVEALGPSWGAERPPALLAHWATVDAELRAHLAARPTPAHELTVWRLQL
YCGCVVERTAHQTHRTIHDAFSG
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mRNA from alignment at P-wetherbeei_contig18146:39..416-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18146.1.1 ID=mRNA_P-wetherbeei_contig18146.1.1|Name=mRNA_P-wetherbeei_contig18146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig18146:39..416- (Phaeothamnion wetherbeei SAG_119_79)
CGTGACTCGATGTCGACGCGCGACTACGTGCAGCGCATGCACTTCCATGA
GTGCCTGTCGGGTGAGGGTGCCGGCCGGTACATCAGCCACACCCATGACG
ACGACGCGCCCGGCCACAGCCACGAGCCGCGCCGAGTCGCGTCATTGCGA
CCAGACGGCGGATACGTGGAGGCACTCGGTCCGTCATGGGGTGCCGAGCG
ACCGCCCGCTCTCCTCGCGCACTGGGCGACGGTGGATGCCGAGCTGAGAG
CGCACCTCGCGGCCCGGCCCACTCCGGCCCACGAGTTGACGGTCTGGCGC
CTGCAGCTCTACTGCGGGTGCGTGGTTGAGCGGACCGCGCATCAGACGCA
CAGGACGATCCATGACGCGTTCAGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18146:39..416-

>mRNA_P-wetherbeei_contig18146.1.1 ID=mRNA_P-wetherbeei_contig18146.1.1|Name=mRNA_P-wetherbeei_contig18146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig18146:39..416- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACGCGCGACTACGTGCAGCGCATGCACTTCCATGAGTGCCTGTC
GGGTGAGGGTGCCGGCCGGTACATCAGCCACACCCATGACGACGACGCGC
CCGGCCACAGCCACGAGCCGCGCCGAGTCGCGTCATTGCGACCAGACGGC
GGATACGTGGAGGCACTCGGTCCGTCATGGGGTGCCGAGCGACCGCCCGC
TCTCCTCGCGCACTGGGCGACGGTGGATGCCGAGCTGAGAGCGCACCTCG
CGGCCCGGCCCACTCCGGCCCACGAGTTGACGGTCTGGCGCCTGCAGCTC
TACTGCGGGTGCGTGGTTGAGCGGACCGCGCATCAGACGCACAGGACGAT
CCATGACGCGTTCAGTGGC
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