mRNA_P-wetherbeei_contig18088.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18088.4.1
Unique NamemRNA_P-wetherbeei_contig18088.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18088.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18088contigP-wetherbeei_contig18088:660..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size520
Hectar predicted targeting categorymitochondrion
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.989247-UTR-P-wetherbeei_contig18088:659..7901683186135.989247-UTR-P-wetherbeei_contig18088:659..790Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18088 660..790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.9994607-CDS-P-wetherbeei_contig18088:790..11771683186135.9994607-CDS-P-wetherbeei_contig18088:790..1177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18088 791..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18088.4.1prot_P-wetherbeei_contig18088.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18088 791..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18088.4.1

>prot_P-wetherbeei_contig18088.4.1 ID=prot_P-wetherbeei_contig18088.4.1|Name=mRNA_P-wetherbeei_contig18088.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MSSASSSAAATARSRRRRIARLNASSTCHETAISSFTESQPLPHPIPTLP
HLTPCLAFSTEEPRSLRRVACTLEDARIIFGKPFIAVAQLRSLLSPFSLP
PGRFNKTKSESNAAARKPWETHSYHRRRS
back to top

mRNA from alignment at P-wetherbeei_contig18088:660..1177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18088.4.1 ID=mRNA_P-wetherbeei_contig18088.4.1|Name=mRNA_P-wetherbeei_contig18088.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=518bp|location=Sequence derived from alignment at P-wetherbeei_contig18088:660..1177+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGTTACAGCTCGTCGTGGCTGGGCGTTCTACGTAGGGGTTGAGTGCAG
AAACTGGTGCCGCCACTTAGCCACCGAGGCGCAGCAGGTCCGCAACAGTC
TCACCAGCTTTCGCAGGCTCCTGGAAACGTCATGTCCAGCGCTTCCTCCT
CAGCTGCCGCTACTGCCAGATCCCGCCGCCGTCGCATCGCCCGCCTCAAT
GCCTCCTCCACCTGCCATGAAACGGCAATTTCTAGCTTCACTGAGAGCCA
GCCGCTGCCGCATCCAATACCTACCCTTCCCCACCTTACGCCTTGTCTGG
CATTTTCAACTGAAGAACCCCGCAGCCTGCGCAGGGTGGCATGTACGTTA
GAGGATGCTCGGATAATATTCGGAAAGCCTTTCATTGCAGTTGCTCAACT
CCGGTCCCTTCTCTCGCCTTTTTCCCTTCCTCCAGGCCGTTTCAACAAAA
CAAAGAGCGAAAGTAACGCAGCAGCGAGGAAGCCATGGGAAACGCACAGC
TATCACCGCAGGAGATCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18088:660..1177+

>mRNA_P-wetherbeei_contig18088.4.1 ID=mRNA_P-wetherbeei_contig18088.4.1|Name=mRNA_P-wetherbeei_contig18088.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig18088:660..1177+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAGCGCTTCCTCCTCAGCTGCCGCTACTGCCAGATCCCGCCGCCG
TCGCATCGCCCGCCTCAATGCCTCCTCCACCTGCCATGAAACGGCAATTT
CTAGCTTCACTGAGAGCCAGCCGCTGCCGCATCCAATACCTACCCTTCCC
CACCTTACGCCTTGTCTGGCATTTTCAACTGAAGAACCCCGCAGCCTGCG
CAGGGTGGCATGTACGTTAGAGGATGCTCGGATAATATTCGGAAAGCCTT
TCATTGCAGTTGCTCAACTCCGGTCCCTTCTCTCGCCTTTTTCCCTTCCT
CCAGGCCGTTTCAACAAAACAAAGAGCGAAAGTAACGCAGCAGCGAGGAA
GCCATGGGAAACGCACAGCTATCACCGCAGGAGATCG
back to top