mRNA_P-wetherbeei_contig1807.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1807.3.1
Unique NamemRNA_P-wetherbeei_contig1807.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.690e-21
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRLT 249
            +A NNLS+A +YSCD+ R +  LE  +R DP   + DVV FNLCTLYDLS DA ASA +KR LQA A RF L+DIDP++FR++
Sbjct:  641 TALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.510e-21
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRLT 249
            +A NNLS+A +YSCD+ R +  LE  +R DP   + DVV FNLCTLYDLS DA ASA +KR LQA A RF L+DID ++FR++
Sbjct:  250 AALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7S0M9M2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M9M2_9CRYP)

HSP 1 Score: 83.2 bits (204), Expect = 1.420e-18
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            +AA NL++  LY  DLPRA+ ALEAAVR +PAG L   VAFNLCTLYDL G A+A A +KR LQ  A  +  +D DPAA +L
Sbjct:   59 TAATNLAVCLLYCKDLPRAIQALEAAVRANPAGGLTHAVAFNLCTLYDLEG-ADAPA-KKRALQIVARAYAPEDFDPAACKL 138          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.600e-16
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRLT 249
            SA  NLS+A + SCD+ R +  L+  +R +P   + DVV FNLCTLYDLS DA ASA +KR LQA   RF L+DID ++FR++
Sbjct:   30 SALTNLSLA-MCSCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASA-KKRTLQAVTQRFRLEDIDTSSFRMS 110          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7S1U3K9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3K9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.910e-16
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            +AANN++IAALY+C L RA+  LE  +R DP   L    AFNLCTLYDLS +   +  +KRVLQ  A  F L+D++  +FR+
Sbjct:  121 AAANNMAIAALYTCQLNRAVQILEDLIRQDPHRYLCKETAFNLCTLYDLSCEPSVAGRKKRVLQQVALLFYLEDLNAQSFRI 202          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7R9U0R3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0R3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.690e-16
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            SAANNL+IA+LY+C L  A+  LE  VR+DP   L    AFNLCTLYDLS +   +  +KRVLQ  A RF L+D++ + FR+
Sbjct:  427 SAANNLAIASLYTCQLGAAVQILEDLVREDPHRFLRKETAFNLCTLYDLSSEPSVAGRKKRVLQQIALRFHLEDLNASHFRI 508          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7S3XLB3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLB3_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 7.880e-16
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRLT 249
            +AA + + AALY+C L  A+  LE  VR+DPA  L D   F L TLYDL  D  A+  RKR L+  A R+ LDD+ PAAFRL+
Sbjct:  121 AAATDHAAAALYACGLAPAIAKLEELVREDPARNLGDAAVFTLGTLYDLHSDNRAAQRRKRTLERVARRYQLDDLAPAAFRLS 203          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7S2IIP5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IIP5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.090e-15
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   10 NNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            NN ++ ALYSC +  A+  +E+ VR +P   L +V+AFNLCTLY+L  D   S  +KRV+Q  A RF L DI   +FR+
Sbjct:   20 NNYALCALYSCRMHEAVALMESLVRMNPTYFLTEVMAFNLCTLYELGSDGATSLRKKRVVQLIAKRFYLHDIGSESFRI 98          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A7S3DRH9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRH9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.550e-14
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   13 NLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            NL++AALY+C L  A+  +E  +R  P+  L +  A NLCTLY+LSGDA  +  +KR LQ  A RF L DI P +FRL
Sbjct:  330 NLAVAALYTCRLHEAIHVMEGLIRKSPSEALTERSALNLCTLYELSGDAATATRKKRTLQLIAKRFFLHDIGPESFRL 407          
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Match: A0A1Z5JZF6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZF6_FISSO)

HSP 1 Score: 76.6 bits (187), Expect = 1.790e-14
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    4 AANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLSGDAEASAARKRVLQATAARFGLDDIDPAAFRL 246
            A NN+S+ ALY+C+L  A+  +E+ +R+DP   L + V  NLC LY+LS +   +A +K+VLQ  A RF L DI P+++RL
Sbjct:  474 AINNMSLCALYTCNLHEAILLMESLIREDPTKFLTERVCLNLCILYELSNETSMAAKKKKVLQVIAKRFMLHDIGPSSYRL 554          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1807.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JWF7_9PHAE1.690e-2159.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLE2_ECTSI5.510e-2157.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0M9M2_9CRYP1.420e-1858.54Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A6H5KFR3_9PHAE2.600e-1653.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U3K9_9STRA3.910e-1650.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U0R3_9STRA5.690e-1652.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XLB3_HETAK7.880e-1650.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2IIP5_9STRA9.090e-1546.84Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3DRH9_9STRA1.550e-1450.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5JZF6_FISSO1.790e-1445.68Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1807contigP-wetherbeei_contig1807:5850..6101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLE2
Preferred nameTRAPPC12
PFAMsTPR_16,TPR_19,TPR_2
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K10865,ko:K17087,ko:K20309
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0003824,GO:0004175,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006888,GO:0006996,GO:0007030,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010256,GO:0016043,GO:0016192,GO:0016787,GO:0017016,GO:0017112,GO:0017137,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030008,GO:0031267,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048518,GO:0050000,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0071840,GO:0090230,GO:0090234,GO:0098687,GO:0098772,GO:0098813,GO:0099023,GO:0140096,GO:1901564,GO:1902115,GO:1903827,GO:1903829,GO:1905340,GO:1905342
Exons1
Evalue9.03e-22
EggNOG OGsKOG2796@1|root,KOG2796@2759|Eukaryota
Descriptionregulation of kinetochore assembly
Cds size252
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.5569136-CDS-P-wetherbeei_contig1807:5849..61011683186135.5569136-CDS-P-wetherbeei_contig1807:5849..6101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1807 5850..6101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1807.3.1prot_P-wetherbeei_contig1807.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1807 5850..6101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1807.3.1

>prot_P-wetherbeei_contig1807.3.1 ID=prot_P-wetherbeei_contig1807.3.1|Name=mRNA_P-wetherbeei_contig1807.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
SAANNLSIAALYSCDLPRALTALEAAVRDDPAGRLWDVVAFNLCTLYDLS
GDAEASAARKRVLQATAARFGLDDIDPAAFRLT*
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mRNA from alignment at P-wetherbeei_contig1807:5850..6101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1807.3.1 ID=mRNA_P-wetherbeei_contig1807.3.1|Name=mRNA_P-wetherbeei_contig1807.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig1807:5850..6101- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGGCCAACAACCTCTCCATCGCCGCCCTCTACAGCTGCGACCTCCC CCGAGCACTAACGGCGCTTGAGGCGGCCGTCCGGGATGATCCCGCCGGAC GTCTGTGGGACGTGGTGGCCTTCAACCTGTGCACGCTCTACGACCTCAGC GGGGACGCAGAAGCCAGCGCGGCGCGGAAGCGGGTATTGCAGGCGACCGC GGCGCGCTTCGGGCTGGACGACATCGACCCGGCCGCCTTCCGCCTGACCT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1807:5850..6101-

>mRNA_P-wetherbeei_contig1807.3.1 ID=mRNA_P-wetherbeei_contig1807.3.1|Name=mRNA_P-wetherbeei_contig1807.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig1807:5850..6101- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGGCCAACAACCTCTCCATCGCCGCCCTCTACAGCTGCGACCTCCC
CCGAGCACTAACGGCGCTTGAGGCGGCCGTCCGGGATGATCCCGCCGGAC
GTCTGTGGGACGTGGTGGCCTTCAACCTGTGCACGCTCTACGACCTCAGC
GGGGACGCAGAAGCCAGCGCGGCGCGGAAGCGGGTATTGCAGGCGACCGC
GGCGCGCTTCGGGCTGGACGACATCGACCCGGCCGCCTTCCGCCTGACCT
GA
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