mRNA_P-wetherbeei_contig1806.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1806.1.1
Unique NamemRNA_P-wetherbeei_contig1806.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1806.1.1 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.130e-21
Identity = 109/328 (33.23%), Postives = 153/328 (46.65%), Query Frame = 1 
Query:    4 CFGSDWSAFTAAEI-EAGLGKSAELQRRSALRIIRQVGEK----ICAPAELQLHAAVLLQRHMAIEAAAAVSSAXXXXXXXXXXXXXXXXXXXXRASPPLWSGTGEDTKFAGLTPLSPTRVPLDPSXXXXXXXXXXXXXXXXXXXXXXGASYRETNVFSVASACLILANKAMRARVPAAVARPLRAVALLSAAYAVQFPGRGMDRNSDDAKRWQAKVLAAEHCVLASLDFDLFMPEPLRMLRFGGPAML-----PKKSAELLLESALQGLSLWLRFPVQTVAAASTLVAAATTLDRGQLETRALAVAEFAGPVWAQVLECCAEMSAGL 957
            C GSDW  F+   + +    K     RR+AL ++RQV E         A L  HA +LL R++A+   +  + A             XXXXXXX                                XXXXXXXX              G +  ETN + +A+ACL+LANK++RARV   VARP R   LL AAY VQF GR +++ + +  +W+ K+ AAE  V+ +L FDL + +P   L       L      +K+  L+LES  QG S WLRF    VA ++ L+A  +T ++  L  +A   +  AG  W  VL C   ++  L
Sbjct:  755 CIGSDWHCFSKEVVAQIAANKVVADLRRNALHVVRQVSESGSGTAVNSAPLICHAGILLHRYLAVLCVSTPAEAASTATKSTAPSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSTATTGTAASASGGRARLETNFYVLATACLLLANKSLRARV--GVARPRRREELLRAAYGVQFRGRAVEKGTAEVVKWEGKLAAAELEVMVALGFDLHLADPFEALDQQRRQQLITAECHEKTRSLVLESVTQGCSAWLRFEPDVVALSTLLLAIWSTSNQHDLLNKAQQFSVNAGGTWPAVLACTQSLARSL 1080
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK48_ECTSI3.130e-2133.23Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1806contigP-wetherbeei_contig1806:278..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK48
PFAMsPkinase,SET
Model size1003
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00924,ko:K06101,ko:K11423,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,map00310,map04391
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.12e-22
EggNOG OGsCOG2940@1|root,KOG0594@1|root,KOG0594@2759|Eukaryota,KOG1083@2759|Eukaryota
EC2.1.1.43,2.3.1.225
Descriptionuterine gland development
Cds size1002
COG categoryH
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.191544-CDS-P-wetherbeei_contig1806:277..12791683186135.191544-CDS-P-wetherbeei_contig1806:277..1279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1806 278..1279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1806.1.1prot_P-wetherbeei_contig1806.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1806 278..1279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1806.1.1

>prot_P-wetherbeei_contig1806.1.1 ID=prot_P-wetherbeei_contig1806.1.1|Name=mRNA_P-wetherbeei_contig1806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
WCFGSDWSAFTAAEIEAGLGKSAELQRRSALRIIRQVGEKICAPAELQLH
AAVLLQRHMAIEAAAAVSSARSVAAEAAARAKAARAAGAARASPPLWSGT
GEDTKFAGLTPLSPTRVPLDPSPSVGAGSGGVGAGAAAAAAAGGGASYRE
TNVFSVASACLILANKAMRARVPAAVARPLRAVALLSAAYAVQFPGRGMD
RNSDDAKRWQAKVLAAEHCVLASLDFDLFMPEPLRMLRFGGPAMLPKKSA
ELLLESALQGLSLWLRFPVQTVAAASTLVAAATTLDRGQLETRALAVAEF
AGPVWAQVLECCAEMSAGLLPAPSASPAAALLAE
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mRNA from alignment at P-wetherbeei_contig1806:278..1280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1806.1.1 ID=mRNA_P-wetherbeei_contig1806.1.1|Name=mRNA_P-wetherbeei_contig1806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-wetherbeei_contig1806:278..1280+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTGCTTCGGCTCGGACTGGAGCGCCTTCACGGCAGCGGAAATCGAGGC
CGGACTCGGCAAGTCGGCGGAGCTGCAGCGGCGGAGTGCCCTGCGGATCA
TCCGGCAGGTCGGCGAGAAGATCTGCGCTCCGGCAGAGCTGCAGCTGCAC
GCGGCAGTGCTGCTGCAGCGGCACATGGCCATCGAGGCGGCGGCCGCCGT
CTCCTCCGCCCGATCAGTGGCGGCCGAGGCGGCGGCGCGCGCCAAGGCAG
CGAGGGCGGCCGGGGCGGCGAGGGCGTCGCCGCCGTTATGGTCCGGCACC
GGTGAAGACACAAAGTTTGCGGGGTTAACCCCCTTGTCCCCGACGCGCGT
GCCGCTAGACCCGTCGCCGTCAGTGGGGGCGGGTTCGGGAGGAGTGGGCG
CAGGGGCGGCTGCGGCGGCGGCGGCGGGCGGAGGAGCGTCGTACCGGGAG
ACGAACGTCTTTTCGGTGGCATCTGCCTGCCTGATCCTGGCCAACAAGGC
CATGCGTGCGCGCGTGCCGGCGGCCGTGGCGCGGCCGCTGCGGGCGGTTG
CGCTGCTGAGCGCGGCGTACGCGGTGCAGTTTCCGGGGCGCGGCATGGAC
CGCAACAGCGACGATGCCAAGCGGTGGCAGGCCAAGGTGCTGGCGGCGGA
GCACTGCGTGCTGGCGTCGCTGGACTTCGACCTGTTCATGCCGGAGCCGC
TGCGGATGCTCCGCTTCGGCGGCCCGGCCATGCTGCCCAAAAAGAGCGCC
GAACTTTTGCTCGAGTCGGCGCTGCAGGGGCTTAGCCTCTGGCTGCGGTT
CCCCGTGCAGACGGTGGCGGCGGCCTCCACGCTGGTGGCGGCAGCGACGA
CGCTGGACCGCGGCCAGCTGGAGACGCGGGCGCTGGCGGTCGCGGAGTTT
GCCGGCCCTGTCTGGGCGCAGGTGCTCGAGTGCTGCGCCGAGATGAGCGC
GGGGCTGCTGCCGGCGCCGTCGGCGTCGCCGGCCGCCGCGCTGCTGGCGG
AGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1806:278..1280+

>mRNA_P-wetherbeei_contig1806.1.1 ID=mRNA_P-wetherbeei_contig1806.1.1|Name=mRNA_P-wetherbeei_contig1806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig1806:278..1280+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTGCTTCGGCTCGGACTGGAGCGCCTTCACGGCAGCGGAAATCGAGGC
CGGACTCGGCAAGTCGGCGGAGCTGCAGCGGCGGAGTGCCCTGCGGATCA
TCCGGCAGGTCGGCGAGAAGATCTGCGCTCCGGCAGAGCTGCAGCTGCAC
GCGGCAGTGCTGCTGCAGCGGCACATGGCCATCGAGGCGGCGGCCGCCGT
CTCCTCCGCCCGATCAGTGGCGGCCGAGGCGGCGGCGCGCGCCAAGGCAG
CGAGGGCGGCCGGGGCGGCGAGGGCGTCGCCGCCGTTATGGTCCGGCACC
GGTGAAGACACAAAGTTTGCGGGGTTAACCCCCTTGTCCCCGACGCGCGT
GCCGCTAGACCCGTCGCCGTCAGTGGGGGCGGGTTCGGGAGGAGTGGGCG
CAGGGGCGGCTGCGGCGGCGGCGGCGGGCGGAGGAGCGTCGTACCGGGAG
ACGAACGTCTTTTCGGTGGCATCTGCCTGCCTGATCCTGGCCAACAAGGC
CATGCGTGCGCGCGTGCCGGCGGCCGTGGCGCGGCCGCTGCGGGCGGTTG
CGCTGCTGAGCGCGGCGTACGCGGTGCAGTTTCCGGGGCGCGGCATGGAC
CGCAACAGCGACGATGCCAAGCGGTGGCAGGCCAAGGTGCTGGCGGCGGA
GCACTGCGTGCTGGCGTCGCTGGACTTCGACCTGTTCATGCCGGAGCCGC
TGCGGATGCTCCGCTTCGGCGGCCCGGCCATGCTGCCCAAAAAGAGCGCC
GAACTTTTGCTCGAGTCGGCGCTGCAGGGGCTTAGCCTCTGGCTGCGGTT
CCCCGTGCAGACGGTGGCGGCGGCCTCCACGCTGGTGGCGGCAGCGACGA
CGCTGGACCGCGGCCAGCTGGAGACGCGGGCGCTGGCGGTCGCGGAGTTT
GCCGGCCCTGTCTGGGCGCAGGTGCTCGAGTGCTGCGCCGAGATGAGCGC
GGGGCTGCTGCCGGCGCCGTCGGCGTCGCCGGCCGCCGCGCTGCTGGCGG
AG
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