mRNA_P-wetherbeei_contig18006.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18006.1.1
Unique NamemRNA_P-wetherbeei_contig18006.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A7S3Y5X8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5X8_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.020e-30
Identity = 50/96 (52.08%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGVFDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQPLPWN 288
            HR ALRFP+E F+++GVVP    FDL +A EGE  N+L P+  DPY CN+++ L +KR +RNPF R PPY+ +CPE++ LL +CGP  +   LPW+
Sbjct:   70 HRAALRFPKEDFSFLGVVPQSTKFDLQKATEGESQNALTPYLSDPYGCNTDA-LSEKRKERNPFFRQPPYLLSCPEIAPLLQWCGPQIYQGYLPWS 164          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: B8C2M3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2M3_THAPS)

HSP 1 Score: 112 bits (279), Expect = 2.090e-28
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQP-LPW 285
            H GAL++P   F YVGV P     FDLN + EGE  NSL+PF  DPY C++E  L QKR +RNPF R+PPY  TCPEM ELLH+CGP   P+  +PW
Sbjct:  145 HAGALQWPIARFDYVGVDPPSSTGFDLNESSEGEKRNSLVPFTSDPYGCHTEL-LQQKRKERNPFARTPPYDLTCPEMKELLHWCGPELIPKASVPW 240          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: B7FTW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTW7_PHATC)

HSP 1 Score: 103 bits (256), Expect = 8.810e-25
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQP-LPW 285
            H  AL++P++SF+Y+GV P+    F+L  A+ GE+ N+  PF  DPY C+S+  L +KR  RNPF+R+PPY  +CP+M ELL YCGP   P+  +PW
Sbjct:  166 HAQALQWPKQSFSYIGVDPEANTGFNLQEAVVGELENAAKPFEIDPYGCHSQV-LQEKRRSRNPFKRTPPYELSCPDMKELLSYCGPAIIPKSKVPW 261          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A7S2HNT6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HNT6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.330e-24
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGV--VPDDGVFDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQPLPWN 288
            H  AL +P   F+YVG+  +P  G FDL ++  GE+ N+  PF  DPY C+S   L QKR +RNPF R+PPY  +CP+MS LL YCGP  FP  LPW+
Sbjct:  246 HAKALHWPLNRFSYVGIDPLPSTG-FDLAKSKAGEVQNAAKPFESDPYGCHSPI-LQQKRKERNPFSRTPPYKLSCPDMSRLLDYCGPELFPSELPWD 341          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A1E7EWA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWA2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.440e-24
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFP-QPLPW 285
            H  ALR+P + FAY+GV P     FDL R+ EGE  N+  PF +DPY C++ + L +KR  RNPFQR+PPY  +CPEM ELL +CGP     Q +PW
Sbjct:  149 HAPALRWPADRFAYIGVDPPASTGFDLQRSTEGESKNAAAPFAQDPYGCHT-AVLQEKRNSRNPFQRTPPYGLSCPEMKELLQFCGPEFISVQLIPW 244          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A7S2YSI4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSI4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.580e-24
Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGV--VPDDGVFDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFP-QPLPW 285
            H  ALR+P   F YVGV   P DG F L  A +GE  N+  PF  DPY C+S   L +KR QRNPF R+PPY  +CP+M EL+HYCGP  FP +  PW
Sbjct:  161 HAEALRWPSSKFFYVGVDPSPSDG-FRLEEASKGEAENAAKPFESDPYGCSSPV-LKKKREQRNPFYRTPPYDLSCPDMKELMHYCGPQLFPIEKTPW 256          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A835Z903_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z903_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.350e-23
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGVFDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQPLPWNP 291
            H  ALR+P  + +Y+G+ P    FD   A  GE A++ +PF+ DPY C S   L  KR  RNP+ R PPY  T PEM+ELL +CGP  +   LPW+P
Sbjct:  199 HAAALRYPARAVSYLGIAPRGARFDTAGATAGEAAHAALPFKTDPYGCGSPV-LADKRRDRNPYAREPPYPLTAPEMAELLRWCGPGIYAGALPWDP 294          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A7S1FSM8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSM8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.510e-23
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAF-PQPLPW 285
            H GAL +P + F + GV P     F+LN AI GE  N+ +PF  DPY C++ + L +KR QRNPF R+PPY  TCPE+  LL +CGP  +  + LPW
Sbjct:   56 HAGALIWPPDQFRFTGVDPPSYTGFNLNDAIAGEQKNAALPFAGDPYGCHT-AALQEKRKQRNPFMRTPPYELTCPEIKSLLTWCGPEIYNEEDLPW 151          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A7S4S882_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S882_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.190e-22
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQPLPWN 288
            H  ALR+P  +F+YVG+ P     FDL ++   E  N+  PF  DPY CNS   L QKR  RNPF R+PPY  +C E+ +LL +CGP  FP  LPW+
Sbjct:  234 HAKALRWPLNAFSYVGIDPSASTGFDLQKSTVAEYQNAAKPFETDPYGCNSPI-LQQKRLDRNPFSRTPPYKLSCVELVDLLDWCGPELFPYELPWD 329          
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Match: A0A1Z5JCQ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCQ7_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 1.550e-22
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 HRGALRFPRESFAYVGVVPDDGV-FDLNRAIEGEIANSLIPFRRDPYACNSESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFP-QPLPW 285
            H  ALR+P   F Y+GV P     F L  A++GE+ NS+ PF+ DPY C+S+  L +KR QRNPF R+PPY  +CPEMS+LL +CG    P   +PW
Sbjct:  227 HAKALRWPPNRFQYIGVDPSASTGFVLEEAMKGELENSVKPFQSDPYGCHSKI-LQEKRKQRNPFSRTPPYTLSCPEMSDLLRFCGSDLIPLDKVPW 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y5X8_HETAK1.020e-3052.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C2M3_THAPS2.090e-2856.70Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B7FTW7_PHATC8.810e-2548.45Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2HNT6_9STRA1.330e-2451.02Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7EWA2_9STRA2.440e-2451.55Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S2YSI4_9STRA4.580e-2453.06Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835Z903_9STRA3.350e-2346.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1FSM8_9STRA7.510e-2348.45Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4S882_9STRA1.190e-2248.45Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JCQ7_FISSO1.550e-2249.48Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18006contigP-wetherbeei_contig18006:770..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps34203
Model size318
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.43e-29
EggNOG OGsKOG4533@1|root,KOG4533@2759|Eukaryota,2XBNH@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_004730.1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.4162457-CDS-P-wetherbeei_contig18006:769..9531683186133.4162457-CDS-P-wetherbeei_contig18006:769..953Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18006 770..953 -
1683186133.4278982-CDS-P-wetherbeei_contig18006:1242..13761683186133.4278982-CDS-P-wetherbeei_contig18006:1242..1376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18006 1243..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18006.1.1prot_P-wetherbeei_contig18006.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18006 770..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18006.1.1

>prot_P-wetherbeei_contig18006.1.1 ID=prot_P-wetherbeei_contig18006.1.1|Name=mRNA_P-wetherbeei_contig18006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
HRGALRFPRESFAYVGVVPDDGVFDLNRAIEGEIANSLIPFRRDPYACNS
ESGLPQKRAQRNPFQRSPPYVNTCPEMSELLHYCGPVAFPQPLPWNPMGG
PPDIDS
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mRNA from alignment at P-wetherbeei_contig18006:770..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18006.1.1 ID=mRNA_P-wetherbeei_contig18006.1.1|Name=mRNA_P-wetherbeei_contig18006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=607bp|location=Sequence derived from alignment at P-wetherbeei_contig18006:770..1376- (Phaeothamnion wetherbeei SAG_119_79)
CACCGCGGTGCGCTCCGCTTCCCCCGCGAGAGCTTTGCCTACGTCGGCGT TGTGCCGGATGACGGCGTCTTTGACCTCAACCGAGCCATCGAGGGGGAGA TCGCCAACTCCCTCATCCCGTTCCGACGCGACCCGTGAGTGGTTGGCTGA TCGGTTGAAGTTCTCTTGATGTCGGGGTTTATGAATCATTTTCTGTACAA ATGTTTCCTTATTGGAGCAATGTTGTAGTTTTGGTGCATAGGATCCTTCG GTTGGCGGTGTCTCAGAGCCTCTTTTTGTGCGATGCATTAATTTGTGGAC GTCTGCGTGCTCGTGGCCACTCGTTGGCATTGTTCTTGACGGCGATGGGA GATTTGCCTGCCGTTGACAAAGCCCCGGCGTCCAAATCCCTTCCTCCATC TCCTTCTCCAACCGGATGAACAGGTACGCGTGCAACTCGGAGAGCGGCCT GCCGCAGAAGCGGGCGCAGCGCAACCCCTTCCAGCGGAGTCCGCCGTACG TCAACACGTGTCCGGAGATGTCCGAGCTGCTCCACTACTGCGGCCCCGTC GCCTTCCCGCAGCCGCTGCCGTGGAACCCGATGGGAGGCCCGCCGGACAT CGACTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18006:770..1376-

>mRNA_P-wetherbeei_contig18006.1.1 ID=mRNA_P-wetherbeei_contig18006.1.1|Name=mRNA_P-wetherbeei_contig18006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig18006:770..1376- (Phaeothamnion wetherbeei SAG_119_79)
CACCGCGGTGCGCTCCGCTTCCCCCGCGAGAGCTTTGCCTACGTCGGCGT
TGTGCCGGATGACGGCGTCTTTGACCTCAACCGAGCCATCGAGGGGGAGA
TCGCCAACTCCCTCATCCCGTTCCGACGCGACCCGTACGCGTGCAACTCG
GAGAGCGGCCTGCCGCAGAAGCGGGCGCAGCGCAACCCCTTCCAGCGGAG
TCCGCCGTACGTCAACACGTGTCCGGAGATGTCCGAGCTGCTCCACTACT
GCGGCCCCGTCGCCTTCCCGCAGCCGCTGCCGTGGAACCCGATGGGAGGC
CCGCCGGACATCGACTCG
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