mRNA_P-wetherbeei_contig1800.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1800.4.1
Unique NamemRNA_P-wetherbeei_contig1800.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.140e-101
Identity = 165/254 (64.96%), Postives = 193/254 (75.98%), Query Frame = 1
Query:   10 GAPHPQSIPESLVRFDPAVFIGLEPTQ-------SAAYAAGAG--KSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            G   P  +P++LV+FDP +F GLEP+        +A    G G            K    ++SQLDDM+NSMLPPREWTEETGTWMQ VSK PATRL VI+LQE+LD +L+ERQA ETGICPVREDLY QAFDELIR VTLDGPERGLLC+RVRDEI MTIDAYKTLYDSSVTFGVKKQLQAE G A+ E     L   K  LEL V+ELRN++E IEK ++ERRA+D+K+R+EE+DFLK+ GQHLDSFLKQ+G
Sbjct:   15 GMQFPMEVPQTLVKFDPPIFAGLEPSSDPNNGGDNALLMGGNGGXXXXXXXXMGGKGQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 268          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA)

HSP 1 Score: 302 bits (773), Expect = 8.360e-101
Identity = 161/244 (65.98%), Postives = 194/244 (79.51%), Query Frame = 1
Query:   13 APHPQSIPESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            A HP ++P+SLVR+D  +F G+EP      A G G +         TA    +QL+DM+NSMLPPREWTEETGTWMQ VSK PATRLDV++LQE LDK+L ERQAR+TGICPVR+DLY+QAFDELIRQVTLDGPERGLL +RVRDEI MTIDAY+TLYDSSV FG+KKQLQAE G  + EA   QL   K ALE +  ELRNR+E +EKR+AE+R++++KRRREE++FLK+ GQHLDSFLKQ+G
Sbjct:    5 AQHPNAVPDSLVRYDQPIFGGVEP------ATGHGGNG--------TASSSIAQLEDMMNSMLPPREWTEETGTWMQCVSKNPATRLDVVTLQECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKREAEQRSVEDKRRREEVEFLKYQGQHLDSFLKQIG 234          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA)

HSP 1 Score: 294 bits (753), Expect = 9.480e-98
Identity = 160/251 (63.75%), Postives = 191/251 (76.10%), Query Frame = 1
Query:    1 MADGAPHPQSIPESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAKT---ADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            M D A    + P++LV++DPA+F+G +P                 T D K    AD   SQLDDM+NSMLPPREWT+E+GTWMQ VSK  ATRLDVI+LQE LDKRL+ERQARETGICPVREDLY+Q FDELIRQVTLDGPERGLL +RVRDEI MTIDAYK LY+SSVTFGV+KQLQAE G A+ E+  E L A K  LE +V ELRN++E  EKR  ER+ L++K+R+EE+DFLK+ GQHLDSFL+Q+G
Sbjct:    1 MEDEAEPNCTPPDALVKYDPALFVGFDPA----------------TNDVKATRKADATPSQLDDMVNSMLPPREWTQESGTWMQYVSKDSATRLDVINLQEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKVEVSEKRGNERKTLEDKKRKEEIDFLKYQGQHLDSFLRQLG 235          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA)

HSP 1 Score: 285 bits (729), Expect = 6.730e-94
Identity = 153/241 (63.49%), Postives = 183/241 (75.93%), Query Frame = 1
Query:   22 PQSIPESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            P + PESLV+FD  +F+GL+P+     AA A         + K     +SQ+DDM+NSM+PPREWT+ +GTWMQ +SK  ATRLDVI+LQE+LDKRL+ERQARET ICPVREDLY+Q FDELIR VTLD PERGLL +RVRDEI MTIDAYKTLYDSSVTFG+KKQLQAE G +D E     L   K   E K  ELRN+LE IEKR+ ERR L+EK+R+EE+DFLK+ GQHLD+ +K VG
Sbjct:   18 PANPPESLVKFDEPLFVGLQPSSHTKAAAIA---------NIKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKREVERRGLEEKKRKEEIDFLKYQGQHLDTSIKHVG 249          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A6V1KR45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KR45_HETAK)

HSP 1 Score: 283 bits (724), Expect = 3.490e-93
Identity = 155/247 (62.75%), Postives = 185/247 (74.90%), Query Frame = 1
Query:    7 DGAPHPQSIPESLVRFDPAVFIGLEPT-QSAAYAAGAGKSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            +G   P + PESL++FD  +F+GL+P+ Q+  +     K P+ P  +   A     QLDDMLNSMLPPREWTEE+GTWMQ +SK PATRLDVI+LQE LDK L+ERQARETGICPVREDLY+QAFDELIR VTLD PERGLL +R RDE+ MT+DAYKTLY SSVTFGVKKQLQAE G ++     E L   + A E + AELR RL+A EKR AER+ L+ + RR E+DFLK+ GQHLD FLK VG
Sbjct:   10 NGGQGPANPPESLLKFDEPIFVGLQPSNQNEGF-----KMPEAPKGELTNA-----QLDDMLNSMLPPREWTEESGTWMQYISKEPATRLDVITLQEHLDKCLVERQARETGICPVREDLYSQAFDELIRHVTLDSPERGLLLLRARDEVRMTVDAYKTLYGSSVTFGVKKQLQAELGMSEMANQIEALGEARRARERRCAELRARLDAAEKRAAERQQLEGQARRAEIDFLKYQGQHLDGFLKHVG 246          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA)

HSP 1 Score: 266 bits (680), Expect = 1.010e-86
Identity = 139/237 (58.65%), Postives = 174/237 (73.42%), Query Frame = 1
Query:   34 PESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            P SL++ D  +F+G +   SA                AK       QL +M+NSMLPPREWTE TGTWMQ VSKAPA+R DVI++QE LD +L+ERQAR+ GICPVREDLYAQ FDELIRQ+TLDGPERGLL +RVRDE+ MT+DAYK LYDSSVTFGV+KQLQAE G A+ +    +L A    LE +V ELRN +E +EKR +E +A+ +K+R++E+DFLK+ GQHLD FL+Q+G
Sbjct:   10 PASLLKHDEPLFVGFDGADSA----------------AKPGTAAGGQLGEMVNSMLPPREWTEPTGTWMQYVSKAPASRTDVIAMQEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVVEKRASEHKAMADKKRKDEIDFLKYQGQHLDQFLRQLG 230          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN)

HSP 1 Score: 256 bits (653), Expect = 3.100e-83
Identity = 127/187 (67.91%), Postives = 158/187 (84.49%), Query Frame = 1
Query:  184 MLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            M+NSMLPPREWT+ +GTWMQ VSK  ATR+DVISLQE LDKRL++RQAR+ GICPVREDLY+Q +DELIRQ+TLDGPERGLL +RVRDEI MTIDAYK LYDSSVTFG++KQLQAE G ++ E    +L A    LE +V ELRN +E IEKR+ E +A+++K+R++E+DFLK+ GQHLD+FL+Q+G
Sbjct:    1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKRENEHKAVEDKKRKDEIDFLKYQGQHLDAFLRQLG 187          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A812WGS2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WGS2_SYMMI)

HSP 1 Score: 255 bits (652), Expect = 4.120e-83
Identity = 130/190 (68.42%), Postives = 155/190 (81.58%), Query Frame = 1
Query:  184 MLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVGLPK 753
            M+ ++LPPREW EE+G WMQ + K PATRLDVISLQE+LDK+L ER+ARETGICPVRE+LY+Q FDELIRQV LD PERGLL MR RDE+ MTIDAYKTLY SSVTFG+KKQL+AE G    E  A +L    + LEL+V ELR++LE IEKR+AERR  +EK+R+EELDFLK+ GQHLDSF KQ+ + K
Sbjct:    1 MIAAVLPPREWIEESGVWMQNICKDPATRLDVISLQEKLDKKLSERKARETGICPVREELYSQCFDELIRQVALDSPERGLLLMRTRDEVKMTIDAYKTLYSSSVTFGIKKQLRAEQGIPALEEQANELQKTNSQLELEVQELRSKLEIIEKREAERRTTEEKKRKEELDFLKYQGQHLDSFTKQMNVAK 190          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA)

HSP 1 Score: 251 bits (642), Expect = 7.940e-81
Identity = 129/193 (66.84%), Postives = 160/193 (82.90%), Query Frame = 1
Query:  175 LDDMLNSMLPPREWTEE-TGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVGLP 750
            ++++LNS+LPPR W +E    WMQ VSK PA+RLDVI+LQE LD++L+ERQARE GICPVREDLY+Q FDELIRQVT++ PERGLL +RVRDEI MTIDAYKTLY+SSVTFGV+KQLQAE G A+ E+  E+L+  K  L+ +V ELRN++E IEKR  ERR L+EK+R+EE+DFLK+ GQHLD FLK +G P
Sbjct:   49 IEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVIEKRATERRQLEEKKRKEEIDFLKYQGQHLDQFLKTLGGP 241          
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.380e-78
Identity = 135/239 (56.49%), Postives = 167/239 (69.87%), Query Frame = 1
Query:   28 SIPESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAKTADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERLDKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDEINMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELKVAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVG 744
            S PESLV++D  +F G             G    +P    K      S+++D+LN+MLPP+ W EETG WM+  S  P+TR DVI LQE++D +LI+RQARE+GIC VRED+YAQ FDELIR+VT++ PERGLL +R+RDEI MT DAYKTLYDSS+TFGV+KQLQAE G    E     LA  K   E KV EL N+LE IEKR +ERRAL EKR +EE++FLK+ GQHLD+FLK  G
Sbjct:    5 SPPESLVKYDAPIFTGEH---------NEGGKKAKPAPGTKIDPV--SRIEDVLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKIALLAEEKREYENKVLELTNKLEVIEKRGSERRALQEKRYKEEIEFLKYQGQHLDAFLKSAG 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1800.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ6_ECTSI1.140e-10164.96p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A835YSJ6_9STRA8.360e-10165.98p28 protein n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2CCB2_9STRA9.480e-9863.75Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UXS2_9STRA6.730e-9463.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1KR45_HETAK3.490e-9362.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2S909_9STRA1.010e-8658.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5N0_AURAN3.100e-8367.91Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812WGS2_SYMMI4.120e-8368.42Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S1GAQ8_9STRA7.940e-8166.84Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A024UH61_9STRA2.380e-7856.49Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1800contigP-wetherbeei_contig1800:4549..5540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEJ6
PFAMsAx_dynein_light,Taxilin
Model size756
Max annot lvl2759|Eukaryota
KEGG koko:K10410
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.87e-102
EggNOG OGsKOG4001@1|root,KOG4001@2759|Eukaryota
Ec32 ortholog descriptionAxonemal dynein light chain
Ec32 orthologEc-21_004400.1
Descriptiondynein heavy chain binding
Cds size756
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.3222744-CDS-P-wetherbeei_contig1800:4548..49441683186133.3222744-CDS-P-wetherbeei_contig1800:4548..4944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1800 4549..4944 +
1683186133.3341181-CDS-P-wetherbeei_contig1800:5180..55401683186133.3341181-CDS-P-wetherbeei_contig1800:5180..5540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1800 5181..5540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1800.4.1prot_P-wetherbeei_contig1800.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1800 4549..5540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1800.4.1

>prot_P-wetherbeei_contig1800.4.1 ID=prot_P-wetherbeei_contig1800.4.1|Name=mRNA_P-wetherbeei_contig1800.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MADGAPHPQSIPESLVRFDPAVFIGLEPTQSAAYAAGAGKSPQRPTRDAK
TADKQSSQLDDMLNSMLPPREWTEETGTWMQRVSKAPATRLDVISLQERL
DKRLIERQARETGICPVREDLYAQAFDELIRQVTLDGPERGLLCMRVRDE
INMTIDAYKTLYDSSVTFGVKKQLQAEHGTADTEAAAEQLAAGKAALELK
VAELRNRLEAIEKRQAERRALDEKRRREELDFLKHTGQHLDSFLKQVGLP
K*
back to top

mRNA from alignment at P-wetherbeei_contig1800:4549..5540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1800.4.1 ID=mRNA_P-wetherbeei_contig1800.4.1|Name=mRNA_P-wetherbeei_contig1800.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=992bp|location=Sequence derived from alignment at P-wetherbeei_contig1800:4549..5540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGACGGCGCACCGCACCCGCAATCCATACCGGAGAGCCTGGTCAG GTTCGACCCAGCGGTCTTCATCGGCCTCGAGCCCACCCAGTCCGCCGCCT ATGCAGCCGGAGCCGGCAAGAGCCCGCAGCGACCAACACGAGACGCAAAG ACTGCAGATAAGCAGTCGTCGCAGCTCGATGATATGTTAAATTCGATGTT GCCGCCACGGGAATGGACGGAGGAGACCGGCACATGGATGCAGCGCGTCA GCAAGGCGCCGGCGACACGACTAGACGTCATATCGCTCCAGGAGCGGCTG GACAAGCGTCTCATCGAGCGACAGGCGCGAGAAACAGGCATTTGCCCCGT GCGGGAGGACCTTTATGCACAGGCGTTTGACGAGCTGATCCGACAGGTGA GGTCCAAATCATTTTATCGATCACCTACCTGTTTTGGGCCCCGTCCCGTC CTCATATTTCAACCGGCACCTCTTTAAAGTTGCGTGGATACCTACGGCCG GACGCTTCTTTTGGTTTTGGACTCGTTTCGGCAGAGTCTCATTGCCATGA AGAGGCAGGTCCACTCCAATGTCTGCCTTCCCGCCTCCCCTCCATGCTCT CTTCCTGGCTGCCCGCACCGCCGTCTGTGCAGGTCACGCTGGACGGCCCT GAGCGCGGGCTGCTCTGCATGCGTGTCCGCGACGAGATCAACATGACCAT CGACGCCTACAAGACGCTCTACGACTCCTCCGTCACCTTCGGCGTCAAGA AGCAGCTGCAGGCGGAGCACGGCACCGCCGACACTGAGGCCGCTGCCGAG CAGCTGGCGGCGGGCAAAGCGGCGCTCGAGCTGAAGGTGGCCGAGCTGCG GAACCGCCTGGAGGCCATCGAGAAGCGGCAGGCGGAGCGGCGGGCGCTCG ATGAGAAGCGGCGGCGAGAGGAGCTCGACTTCCTGAAGCACACGGGCCAG CATCTCGACTCCTTTCTGAAGCAGGTCGGGCTGCCCAAGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1800:4549..5540+

>mRNA_P-wetherbeei_contig1800.4.1 ID=mRNA_P-wetherbeei_contig1800.4.1|Name=mRNA_P-wetherbeei_contig1800.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1800:4549..5540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGACGGCGCACCGCACCCGCAATCCATACCGGAGAGCCTGGTCAG
GTTCGACCCAGCGGTCTTCATCGGCCTCGAGCCCACCCAGTCCGCCGCCT
ATGCAGCCGGAGCCGGCAAGAGCCCGCAGCGACCAACACGAGACGCAAAG
ACTGCAGATAAGCAGTCGTCGCAGCTCGATGATATGTTAAATTCGATGTT
GCCGCCACGGGAATGGACGGAGGAGACCGGCACATGGATGCAGCGCGTCA
GCAAGGCGCCGGCGACACGACTAGACGTCATATCGCTCCAGGAGCGGCTG
GACAAGCGTCTCATCGAGCGACAGGCGCGAGAAACAGGCATTTGCCCCGT
GCGGGAGGACCTTTATGCACAGGCGTTTGACGAGCTGATCCGACAGGTCA
CGCTGGACGGCCCTGAGCGCGGGCTGCTCTGCATGCGTGTCCGCGACGAG
ATCAACATGACCATCGACGCCTACAAGACGCTCTACGACTCCTCCGTCAC
CTTCGGCGTCAAGAAGCAGCTGCAGGCGGAGCACGGCACCGCCGACACTG
AGGCCGCTGCCGAGCAGCTGGCGGCGGGCAAAGCGGCGCTCGAGCTGAAG
GTGGCCGAGCTGCGGAACCGCCTGGAGGCCATCGAGAAGCGGCAGGCGGA
GCGGCGGGCGCTCGATGAGAAGCGGCGGCGAGAGGAGCTCGACTTCCTGA
AGCACACGGGCCAGCATCTCGACTCCTTTCTGAAGCAGGTCGGGCTGCCC
AAGTGA
back to top