mRNA_P-wetherbeei_contig17963.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17963.3.1
Unique NamemRNA_P-wetherbeei_contig17963.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A2N3E9P3_9PROT (DAO domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-10 TaxID=2013656 RepID=A0A2N3E9P3_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.000e-20
Identity = 57/132 (43.18%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIP-PSNTVNRWGLRAAYGLYALRD 393
            FG RGD  G  A          + L +  P  +   +   WRGLVC+T RR+ + G    D  V FA   HG+G A   WAGRL A L+ GAA   DIPA+FRG P +IP PS  +  W LR A G Y L D
Sbjct:   12 FGARGDLTGKPADARRMRAFMERRLGQVFPGWAHVPVTHNWRGLVCMTLRRTPSIGELEGDPGVFFALAWHGNGVAAAPWAGRLLARLIGGAAGNGDIPAVFRGAPTRIPFPS--LRHWYLRGALGYYRLTD 141          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A2N3EJ23_9PROT (FAD-binding oxidoreductase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EJ23_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 9.600e-19
Identity = 56/131 (42.75%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRD 393
            FG RGD  G  A  A       + L    PA +       WRGLVC+ AR + + G   DD TV FA G HG G +   W+GR+AA L+ G A  +DIPA  RG P +IP    + RW LRAA G Y   D
Sbjct:  325 FGARGDLTGKPADGAKMRRFMERRLAEVFPAWAGIPTTHCWRGLVCMAARLTPSIGRLDDDPTVFFALGYHGDGVSAAPWSGRMAAQLIGGKAELSDIPAPLRGPPARIP-FPALRRWYLRAALGYYWFTD 454          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A4R6R6I3_9HYPH (Glycine/D-amino acid oxidase-like deaminating enzyme n=1 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6R6I3_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 8.640e-18
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLA-GAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRDAL 399
            FG RG T G+           ++ L    PA  D ++ + W GLVCLT R + A G  PDDA+V++ FG HGSG A   WAGR  AD +A G      +PA   GLP  +     V R+GL+AAY  Y +R+ +
Sbjct:  314 FGARGGTSGSPTEDMRMKSWLVRRLGEVFPAWRDVDVEYFWNGLVCLTGRLTPAIGRLPDDASVSYGFGWHGSGVAAATWAGRALADGVARGGTGPLAVPAPVAGLPPSLLHP-LVRRFGLKAAYVWYGIRERI 446          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A2M7YCK2_9RHOB (DAO domain-containing protein n=1 Tax=Rhodobacterales bacterium CG_4_9_14_3_um_filter_71_31 TaxID=1974085 RepID=A0A2M7YCK2_9RHOB)

HSP 1 Score: 79.3 bits (194), Expect = 9.740e-15
Identity = 56/132 (42.42%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRDA 396
            FG RGD  G+ A+           L R  PA  D  + F WRG +C T   + A G   DDA+V  AFG HGSG      AGRL A ++AGA + T IPAL+RGLP +IP       W L A    Y   DA
Sbjct:  249 FGMRGDLSGSRASAPRWRARLAAHLARAYPAWRDIPLDFYWRGPICATRAMAPAVGRLADDASVFHAFGWHGSGVNGAQVAGRLLAGVIAGAPDAT-IPALWRGLPPRIPLPGLRPLW-LGATLAAYRAADA 378          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A2M7QP61_9RHOB (FAD-binding oxidoreductase n=1 Tax=Rhodobacterales bacterium CG_4_10_14_0_8_um_filter_70_9 TaxID=1974084 RepID=A0A2M7QP61_9RHOB)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-14
Identity = 56/132 (42.42%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRDA 396
            FG RGD  G+ A+           L R  PA  D  + F WRG +C T   + A G   DDA+V  AFG HGSG      AGRL A ++AGA + T IPAL+RGLP +IP       W L A    Y   DA
Sbjct:  351 FGMRGDLSGSRASAPRWRARLAAHLARAYPAWRDIPLDFYWRGPICATRAMAPAVGRLADDASVFHAFGWHGSGVNGAQVAGRLLAGVIAGAPDAT-IPALWRGLPPRIPLPGLRPLW-LGATLAAYRAADA 480          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: UPI00141F0D33 (FAD-binding oxidoreductase n=1 Tax=Parvibaculum indicum TaxID=562969 RepID=UPI00141F0D33)

HSP 1 Score: 77.8 bits (190), Expect = 4.240e-14
Identity = 50/131 (38.17%), Postives = 61/131 (46.56%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRD 393
            FG RGD  G     A       + L    PA +  E    WRG VC+T R + +     DD T       HG G +   WAGR+AA L+ G A E D+PA FRG P  IP +  + RW LR A   Y   D
Sbjct:  318 FGARGDLTGRPEDGAAMRRWMERRLGEVFPAWAAVETTHYWRGFVCMTRRLTPSIAFMEDDRTALAVLAYHGDGVSAAPWAGRMAARLIVGTAEEADLPAPFRGEPGAIPFA-ALRRWYLRGALSYYRWTD 447          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: A0A839AGD4_9HYPH (FAD-binding oxidoreductase n=1 Tax=Stappia albiluteola TaxID=2758565 RepID=A0A839AGD4_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 2.700e-8
Identity = 55/137 (40.15%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTARRSLATGLDPDD------ATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRD 393
            FG RG T    AA A       +      PA    E  + W GLVCLT  RSL   L   D      A+ A+    HG+G A  + AGRL ADL AGA +E+DIPA+ RG   K  P   + R  L+AAY  + L D
Sbjct:  316 FGMRGGTSHAPAAVAEMRQAIRRDFEAMFPAWRQVETPWFWSGLVCLT--RSLTQYLGKVDGWSNAWASAAY----HGNGVAMGSHAGRLVADLGAGAIDESDIPAVMRG-GLKPFPLPALRRTYLKAAYAWFGLVD 445          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: UPI00045B6CC8 (FAD-binding oxidoreductase n=1 Tax=Allgaiera indica TaxID=765699 RepID=UPI00045B6CC8)

HSP 1 Score: 59.7 bits (143), Expect = 9.320e-8
Identity = 56/136 (41.18%), Postives = 67/136 (49.26%), Query Frame = 1
Query:    1 FGGRGDTEGTAAARANQAVETLKALVRT-----LPALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRD 393
            FG RG   GT+AA A  A+ T +A VR+      PA +  E    W G VCLT   +   G  P    +  A G HGSG A  +  GRLAA L+AGAA E  IPAL    P++ P      R  L A Y    LRD
Sbjct:  309 FGMRG---GTSAAPA--AIATTQARVRSHFDAMFPAWNGVETESRWSGFVCLTGSLAPFVGRVPGAEGLFAALGWHGSGVAPASRGGRLAAQLIAGAAPE--IPALMAAPPRRFPLP-AFRRTALAAGYLAADLRD 436          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: UPI001C971C2B (FAD-binding oxidoreductase n=2 Tax=Leisingera TaxID=191028 RepID=UPI001C971C2B)

HSP 1 Score: 56.6 bits (135), Expect = 1.110e-6
Identity = 41/110 (37.27%), Postives = 50/110 (45.45%), Query Frame = 1
Query:   88 PALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVA------FAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRDAL 399
            PAL+ AE A+ W GLVCLT       GL P    +         FG HG G A   + GRL A + AG    + +P L +  P   P      R GL  AY  Y +RD L
Sbjct:  348 PALAQAETAYHWSGLVCLT------RGLTPYAGQIGGWRRAWTGFGYHGGGVAMATYTGRLLAGIAAGKPCSSPLPQLMQAQPAAFPFPG-FRRRGLPLAYTCYGIRDLL 450          
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Match: UPI001C942104 (FAD-binding oxidoreductase n=2 Tax=Leisingera daeponensis TaxID=405746 RepID=UPI001C942104)

HSP 1 Score: 54.3 bits (129), Expect = 7.070e-6
Identity = 38/104 (36.54%), Postives = 46/104 (44.23%), Query Frame = 1
Query:   88 PALSDAEIAFAWRGLVCLTARRSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPALFRGLPQKIPPSNTVNRWGLRAAYGLYALRDAL 399
            PAL+DAE A+ W GLVC+T   +   G   D       FG HG G A   + GRL A + AG      +P L +  P   P      R  L  AY  Y   D L
Sbjct:  348 PALADAETAYHWSGLVCVTRGLTPYAGQIADWQRAWTGFGYHGGGVAMATYTGRLLAGVAAGMPCRAPMPKLMQNKPANFPIPK-YRRHYLPLAYTCYGFMDLL 450          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17963.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2N3E9P3_9PROT1.000e-2043.18DAO domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2N3EJ23_9PROT9.600e-1942.75FAD-binding oxidoreductase n=1 Tax=Alphaproteobact... [more]
A0A4R6R6I3_9HYPH8.640e-1840.30Glycine/D-amino acid oxidase-like deaminating enzy... [more]
A0A2M7YCK2_9RHOB9.740e-1542.42DAO domain-containing protein n=1 Tax=Rhodobactera... [more]
A0A2M7QP61_9RHOB1.280e-1442.42FAD-binding oxidoreductase n=1 Tax=Rhodobacterales... [more]
UPI00141F0D334.240e-1438.17FAD-binding oxidoreductase n=1 Tax=Parvibaculum in... [more]
A0A839AGD4_9HYPH2.700e-840.15FAD-binding oxidoreductase n=1 Tax=Stappia albilut... [more]
UPI00045B6CC89.320e-841.18FAD-binding oxidoreductase n=1 Tax=Allgaiera indic... [more]
UPI001C971C2B1.110e-637.27FAD-binding oxidoreductase n=2 Tax=Leisingera TaxI... [more]
UPI001C9421047.070e-636.54FAD-binding oxidoreductase n=2 Tax=Leisingera daep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17963contigP-wetherbeei_contig17963:980..1387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog402881.Plav_0954
Preferred nameordL
PFAMsDAO
Model size408
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-18
EggNOG OGsCOG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,2TT3Y@28211|Alphaproteobacteria,1JPUT@119043|Rhodobiaceae
DescriptionFAD dependent oxidoreductase
Cds size408
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.1449318-CDS-P-wetherbeei_contig17963:979..13871683186132.1449318-CDS-P-wetherbeei_contig17963:979..1387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17963 980..1387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17963.3.1prot_P-wetherbeei_contig17963.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17963 980..1387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17963.3.1

>prot_P-wetherbeei_contig17963.3.1 ID=prot_P-wetherbeei_contig17963.3.1|Name=mRNA_P-wetherbeei_contig17963.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
FGGRGDTEGTAAARANQAVETLKALVRTLPALSDAEIAFAWRGLVCLTAR
RSLATGLDPDDATVAFAFGCHGSGTATMAWAGRLAADLLAGAANETDIPA
LFRGLPQKIPPSNTVNRWGLRAAYGLYALRDALHL*
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mRNA from alignment at P-wetherbeei_contig17963:980..1387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17963.3.1 ID=mRNA_P-wetherbeei_contig17963.3.1|Name=mRNA_P-wetherbeei_contig17963.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig17963:980..1387- (Phaeothamnion wetherbeei SAG_119_79)
TTCGGCGGACGCGGCGACACCGAGGGAACCGCCGCGGCCCGCGCGAACCA GGCCGTCGAAACGCTCAAGGCCCTGGTGCGCACGCTTCCCGCCTTGTCGG ATGCCGAGATCGCCTTCGCCTGGCGCGGCCTCGTCTGCCTGACGGCGCGC AGAAGCCTCGCCACCGGCCTCGATCCCGATGACGCGACCGTCGCCTTCGC CTTCGGCTGCCACGGCTCGGGAACCGCCACCATGGCCTGGGCCGGCCGCC TCGCCGCCGACCTTCTCGCCGGCGCCGCCAATGAAACCGACATTCCCGCC CTCTTCAGGGGCCTGCCGCAAAAAATTCCGCCCTCAAACACCGTGAACCG GTGGGGTTTGAGGGCGGCTTACGGACTCTATGCGCTACGCGACGCCCTGC ATCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17963:980..1387-

>mRNA_P-wetherbeei_contig17963.3.1 ID=mRNA_P-wetherbeei_contig17963.3.1|Name=mRNA_P-wetherbeei_contig17963.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig17963:980..1387- (Phaeothamnion wetherbeei SAG_119_79)
TTCGGCGGACGCGGCGACACCGAGGGAACCGCCGCGGCCCGCGCGAACCA
GGCCGTCGAAACGCTCAAGGCCCTGGTGCGCACGCTTCCCGCCTTGTCGG
ATGCCGAGATCGCCTTCGCCTGGCGCGGCCTCGTCTGCCTGACGGCGCGC
AGAAGCCTCGCCACCGGCCTCGATCCCGATGACGCGACCGTCGCCTTCGC
CTTCGGCTGCCACGGCTCGGGAACCGCCACCATGGCCTGGGCCGGCCGCC
TCGCCGCCGACCTTCTCGCCGGCGCCGCCAATGAAACCGACATTCCCGCC
CTCTTCAGGGGCCTGCCGCAAAAAATTCCGCCCTCAAACACCGTGAACCG
GTGGGGTTTGAGGGCGGCTTACGGACTCTATGCGCTACGCGACGCCCTGC
ATCTGTGA
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