mRNA_P-wetherbeei_contig10045.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10045.1.1
Unique NamemRNA_P-wetherbeei_contig10045.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10045.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10045contigP-wetherbeei_contig10045:1261..1500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911256_gene1932
Preferred namernc
PFAMsRibonucleas_3_3,dsrm
Model size240
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03685
KEGG Pathwayko03008,ko05205,map03008,map05205
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363
Exons1
Evalue2.81e-06
EggNOG OGsCOG0571@1|root,COG0571@2|Bacteria,1MUQ6@1224|Proteobacteria,2TTIA@28211|Alphaproteobacteria,3N6RH@45401|Hyphomicrobiaceae
EC3.1.26.3
DescriptionDigests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
Cds size225
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.5290942-CDS-P-wetherbeei_contig10045:1260..14851683185851.5290942-CDS-P-wetherbeei_contig10045:1260..1485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10045 1261..1485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.537561-UTR-P-wetherbeei_contig10045:1485..15001683185851.537561-UTR-P-wetherbeei_contig10045:1485..1500Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10045 1486..1500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10045.1.1prot_P-wetherbeei_contig10045.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10045 1261..1485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10045.1.1

>prot_P-wetherbeei_contig10045.1.1 ID=prot_P-wetherbeei_contig10045.1.1|Name=mRNA_P-wetherbeei_contig10045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MLNELAQKRGQSVIYSEVERTGPSHLPGFTFEVRIGDYLARGTQSGSKQE
GKQSAAQAWMEKYARLTLVPLPADS
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mRNA from alignment at P-wetherbeei_contig10045:1261..1500-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10045.1.1 ID=mRNA_P-wetherbeei_contig10045.1.1|Name=mRNA_P-wetherbeei_contig10045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig10045:1261..1500- (Phaeothamnion wetherbeei SAG_119_79)
AAGACGCCTTCGGCGATGCTGAACGAGCTCGCGCAGAAGCGAGGGCAGTC
CGTAATCTACTCAGAGGTGGAGCGCACCGGTCCGTCCCACCTTCCAGGCT
TCACTTTTGAGGTCCGCATTGGGGATTACCTGGCCCGCGGCACGCAATCC
GGCAGCAAGCAGGAAGGCAAGCAAAGCGCGGCGCAGGCATGGATGGAGAA
GTACGCGCGCCTCACACTGGTGCCGCTGCCGGCGGACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10045:1261..1500-

>mRNA_P-wetherbeei_contig10045.1.1 ID=mRNA_P-wetherbeei_contig10045.1.1|Name=mRNA_P-wetherbeei_contig10045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig10045:1261..1500- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAACGAGCTCGCGCAGAAGCGAGGGCAGTCCGTAATCTACTCAGA
GGTGGAGCGCACCGGTCCGTCCCACCTTCCAGGCTTCACTTTTGAGGTCC
GCATTGGGGATTACCTGGCCCGCGGCACGCAATCCGGCAGCAAGCAGGAA
GGCAAGCAAAGCGCGGCGCAGGCATGGATGGAGAAGTACGCGCGCCTCAC
ACTGGTGCCGCTGCCGGCGGACAGC
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