mRNA_P-wetherbeei_contig178.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig178.1.2
Unique NamemRNA_P-wetherbeei_contig178.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 382 bits (980), Expect = 2.100e-130
Identity = 204/245 (83.27%), Postives = 221/245 (90.20%), Query Frame = 2
Query:  296 VTAFVPGT-SPFVTGTMSAGLRVSAAVSSVA-PPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            V AF  G  S +++G+MSAGLR+ A  SS     AS  +SGAAS VMMPIGVPKVAYRVPGA +ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVI+GLAIYDTMQHIKSEV+TIN+G+AASMASFLLAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+ M+G+TQE V  ALDRDNFMSAQ A +FGLIDQ+IELKKE
Sbjct:   18 VAAFSSGAHSTWLSGSMSAGLRMPAVPSSTGLSKASYQRSGAASTVMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAQMSGRTQEEVTRALDRDNFMSAQAALEFGLIDQIIELKKE 262          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 6.570e-126
Identity = 194/237 (81.86%), Postives = 210/237 (88.61%), Query Frame = 2
Query:  332 TGTMSAGLRVSAAVSSVAPPA------SRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            TGTMS GLR     S +   A      S  KSGAAS VMMPIGVPKVAYRVPGA TADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIY+YVNCPGGSVI+GLA++DTMQHI+SEVVTINVGLAASMASF+LAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+MMTGQTQE++   LDRDNFMSAQ A D+GL+D VI+L K+
Sbjct:    2 TGTMSPGLRTPGTTSVLGREARTYRRLSTTKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 238          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA)

HSP 1 Score: 358 bits (918), Expect = 4.630e-121
Identity = 188/260 (72.31%), Postives = 222/260 (85.38%), Query Frame = 2
Query:  242 MRARLLPAAAALAVAASRVTAFVPGTSPFVTGTMSAGLRVSAAVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKK 1021
            M  ++L A AAL   AS  +A     S F TGT++AGL   +A         R  SGA S+VMMPIGVPKVAYRVPG+ +ADW+DIYNRLYRERIIF+GQEIDDE ANQIIGV+LYLDSED  KPIYMY+NCPGGSVI+G+AIYDTMQHIK++VVTINVG++ASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSMMTGQTQE++++ LDRDNFMSA QA+++GL+DQ+I++++
Sbjct:    1 MAGKMLLALAALLPCASAWSA-----SRFTTGTLNAGLYAPSAAGV------RGTSGAGSMVMMPIGVPKVAYRVPGSGSADWIDIYNRLYRERIIFVGQEIDDEFANQIIGVLLYLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQEQIVKDLDRDNFMSAAQAQEYGLVDQLIDVQE 249          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC)

HSP 1 Score: 355 bits (911), Expect = 2.550e-119
Identity = 174/208 (83.65%), Postives = 195/208 (93.75%), Query Frame = 2
Query:  401 AKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            A SG  S+ MMPIGVPKVAYR+PG+  ADW+DIYNRLYRERIIFLGQEIDDE ANQIIGVMLYLDSEDSTKPIY+Y+NCPGGSVI+GLAIYDTMQHIKSEVVTINVGL+ASMASFLLAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKVEA QI+RI+DN+V+MYSMMTGQT+E++++ LDRDNFMSAQQAK++GLID VI+LK +
Sbjct:   82 ASSGVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDLKTD 289          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA)

HSP 1 Score: 341 bits (875), Expect = 2.000e-114
Identity = 170/222 (76.58%), Postives = 199/222 (89.64%), Query Frame = 2
Query:  356 RVSAAVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKK 1021
            R SA    VA  ++   +GA  +VMMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSEDS+KPIY+Y+NCPGGSVI+G+A++DTM HIKS+VVTIN+GLAASMASFLLA G KG R+ALP+SRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMY+ MTGQTQE+++  LDRDNFMSAQQA ++GL+DQVIEL +
Sbjct:   41 RASAQAPRVAKVSTANTAGAGGLVMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSSKPIYLYINCPGGSVIAGMALFDTMNHIKSKVVTINLGLAASMASFLLAGGEKGSRMALPNSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYAQMTGQTQEQIIIDLDRDNFMSAQQAMEYGLVDQVIELSE 262          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA)

HSP 1 Score: 340 bits (873), Expect = 4.160e-114
Identity = 166/201 (82.59%), Postives = 188/201 (93.53%), Query Frame = 2
Query:  422 IVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLG EIDDELANQIIGVMLYLDSEDS+KPIY+Y+NCPGGSVISGLAI+D MQHIKSEV+TIN+GLAASMASF++AAG+KGKRLALP SR+MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSM TGQTQ+++   LDRDNFMSAQ+A ++GLID+V+E  KE
Sbjct:   60 IKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSEDSSKPIYLYINCPGGSVISGLAIFDCMQHIKSEVITINLGLAASMASFIMAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMFTGQTQDQITRDLDRDNFMSAQEAVEYGLIDRVLEYSKE 260          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2N232_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N232_9STRA)

HSP 1 Score: 339 bits (870), Expect = 9.310e-114
Identity = 168/219 (76.71%), Postives = 196/219 (89.50%), Query Frame = 2
Query:  368 AVSSVAPPASRAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            AV S+A    RA+  +  I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIF+G EIDDELANQIIGV+LYLDSED  KPIY+Y+NCPGGSVISGLAIYD MQHIKSEV+TIN+GLAASMASF+LAAG+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MY+MMTGQTQ++++  LDRDNF+SAQ+A ++GL+D+V+E+  E
Sbjct:   32 AVRSLARSGVRARGCSRDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFIGSEIDDELANQIIGVLLYLDSEDQDKPIYLYINCPGGSVISGLAIYDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYAMMTGQTQDQIISDLDRDNFLSAQEAMEYGLVDRVLEIDTE 250          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2S0Z5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Z5_9STRA)

HSP 1 Score: 339 bits (870), Expect = 1.270e-113
Identity = 163/204 (79.90%), Postives = 190/204 (93.14%), Query Frame = 2
Query:  401 AKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIE 1012
            A+ GA  +VMMPIGVPKVAYR+PG+ +ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGVMLYLDSEDS KPIY+Y+NCPGGSVI+G+A++DTM HIKS VVTIN+GL+ASMASFLLAAG +G R+ALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMYS MTGQTQE+++  LDRDNFMSAQ+A ++GLID++IE
Sbjct:   60 ARQGAGGLVMMPIGVPKVAYRIPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSKKPIYLYINCPGGSVIAGMALFDTMNHIKSPVVTINLGLSASMASFLLAAGKRGSRMALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYSQMTGQTQEQIIRDLDRDNFMSAQEALEYGLIDKIIE 263          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A7S2NSD7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSD7_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.670e-113
Identity = 166/201 (82.59%), Postives = 187/201 (93.03%), Query Frame = 2
Query:  422 IVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            I MMPIGVPKVAYRVPG+++ADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLD ED+TKPIY+Y+NCPGGSVI+GLAIYD M HI SEVVTINVGLAASMASF+LA G+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDNIV+MYSMM+GQTQE++   LDRDNFMSAQQA ++GL+D+V+E+ +E
Sbjct:   80 ITMMPIGVPKVAYRVPGSNSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDQEDNTKPIYLYINCPGGSVIAGLAIYDCMNHIASEVVTINVGLAASMASFILAGGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNIVKMYSMMSGQTQEQITTDLDRDNFMSAQQALEYGLVDRVVEMPRE 280          
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Match: A0A6V2B3S7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B3S7_9STRA)

HSP 1 Score: 339 bits (869), Expect = 1.800e-113
Identity = 166/209 (79.43%), Postives = 190/209 (90.91%), Query Frame = 2
Query:  398 RAKSGAASIVMMPIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE 1024
            R+ S    I MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIF+G EIDDELANQIIGVMLYLDSED  KPIY+Y+NCPGGSVISGLAIYD MQHIKSEV+TIN+GLAASMASF+LAAG+KGKRLALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSMMTGQTQ+++++ LDRDNF+SAQ+A  +GL+D+V+E+  E
Sbjct:   52 RSSSSRNDIKMMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFIGSEIDDELANQIIGVMLYLDSEDQDKPIYLYINCPGGSVISGLAIYDCMQHIKSEVITINLGLAASMASFILAAGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQDQIVKDLDRDNFLSAQEAMAYGLVDRVLEVNSE 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig178.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z885_9STRA2.100e-13083.27ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6H5JGP1_9PHAE6.570e-12681.86ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1TU42_9STRA4.630e-12172.31ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A0G4F8U0_VITBC2.550e-11983.65ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2CF89_9STRA2.000e-11476.58ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0KYD1_9STRA4.160e-11482.59ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2N232_9STRA9.310e-11476.71ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2S0Z5_9STRA1.270e-11379.90ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2NSD7_9STRA1.670e-11382.59ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A6V2B3S7_9STRA1.800e-11379.43ATP-dependent Clp protease proteolytic subunit n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig178contigP-wetherbeei_contig178:360..2466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr14387
Preferred nameclpP
PFAMsCLP_protease
Model size1031
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons4
Evalue2.07e-114
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota,2XB1N@2836|Bacillariophyta
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit
Ec32 orthologEc-10_003920.1
DescriptionClp protease
Cds size894
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig178.1.2prot_P-wetherbeei_contig178.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig178 493..2462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.148078-UTR-P-wetherbeei_contig178:359..4921683186127.148078-UTR-P-wetherbeei_contig178:359..492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig178 360..492 +
1683186127.194276-UTR-P-wetherbeei_contig178:2462..24661683186127.194276-UTR-P-wetherbeei_contig178:2462..2466Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig178 2463..2466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.1576412-CDS-P-wetherbeei_contig178:492..9451683186127.1576412-CDS-P-wetherbeei_contig178:492..945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig178 493..945 +
1683186127.1655686-CDS-P-wetherbeei_contig178:1424..15381683186127.1655686-CDS-P-wetherbeei_contig178:1424..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig178 1425..1538 +
1683186127.176927-CDS-P-wetherbeei_contig178:1688..19131683186127.176927-CDS-P-wetherbeei_contig178:1688..1913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig178 1689..1913 +
1683186127.1851902-CDS-P-wetherbeei_contig178:2360..24621683186127.1851902-CDS-P-wetherbeei_contig178:2360..2462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig178 2361..2462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig178.1.2

>prot_P-wetherbeei_contig178.1.2 ID=prot_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp
MRCPLWFSPRFISSLPHLPSEATFLPGLCANFVVSRMRARLLPAAAALAV
AASRVTAFVPGTSPFVTGTMSAGLRVSAAVSSVAPPASRAKSGAASIVMM
PIGVPKVAYRVPGASTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVM
LYLDSEDSTKPIYMYVNCPGGSVISGLAIYDTMQHIKSEVVTINVGLAAS
MASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRD
NIVRMYSMMTGQTQERVLEALDRDNFMSAQQAKDFGLIDQVIELKKE*
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mRNA from alignment at P-wetherbeei_contig178:360..2466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig178.1.2 ID=mRNA_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2107bp|location=Sequence derived from alignment at P-wetherbeei_contig178:360..2466+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTTCTTAAACTTAGTGCCTCTTTAACCTAGAGGTCCTATCAGTAGCA TCTTTTCCGCCTCGGCATCTTCAAAATCCTGAAACACGTGGGAGCCGCCC TTTTTGCATGATACATTTCTTTTCAGGCAGCCGATGCGTTGCCCATTATG GTTCTCTCCAAGGTTTATTTCATCCCTGCCCCATCTCCCCTCTGAAGCGA CGTTTCTTCCTGGCCTATGTGCAAACTTCGTTGTGAGCAGGATGAGAGCA CGATTGTTGCCCGCGGCCGCGGCGCTGGCGGTTGCCGCCTCGCGCGTCAC CGCCTTCGTGCCGGGCACGTCACCGTTCGTGACGGGAACGATGTCTGCGG GGCTCCGAGTGTCGGCTGCCGTCTCCTCCGTCGCGCCGCCGGCGTCACGA GCAAAATCGGGCGCGGCATCCATCGTCATGATGCCCATCGGCGTGCCCAA GGTGGCCTACCGCGTCCCGGGAGCGTCGACGGCAGATTGGGTGGACATTT ACAACCGATTGTACCGCGAGCGCATCATCTTTTTGGGGCAGGAGATTGAC GACGAGCTCGCGAACCAAATCATCGGCGTCATGTTGGTGCGTTTGCCATT CGGGATATTTTGAGCGGCAGGATCTTTTCTGCTTGCTGCAGAGAGAGGTA GTGGTGTCCGCACTCGTGGAGTCTAAGAGAGAACCTCTTATCTTCCAAAC AGAAATGTAGCCGTTGATGTTGCGTCTTCCGCACCGCCGTGGCGTTTTGT ATGACTGTGCGCACCGTCGCCGGAGCGTTCTCTTCTCAATAGCTAACGCG ATCGAGCCGTTCTTTCTGTTTTTCCTGTGTTTTTGTAGGTGACGGCACTC CCATCCCCAGGACCGTTTCTGTTGAATCAACCGCCGCCCGCCGCTTCTCC TCAACCTGTTGACCCTGTGTTGTCTCTGCCATCGCCTTCGTCCTTTCTTA CTGCCGCTGCCGCATGTCCGGCAACTTCCGCAATGCACCAACAATTCAAC CAAATAACCATTCCAATCCGACGCAAAACCCAACTCATGCGATCCCAAAA CGAAACGGAAAACAGTACTTGGACTCGGAGGACAGCACCAAGCCCATCTA CATGTACGTGAACTGCCCCGGCGGCTCCGTAATCTCCGGACTCGCCATCT ACGACACCATGCAGCACATCAAGTCGGAGGTACGTGGGGAATGAGTTCCC TTAGTGGAACTTCATGTTATCTCTTTGACCGGCTGCTAGATCCGGCGTTT CCAGCCCGAATTGCCCTCTCAAGTTCATTAGAGCCAAACTTCCCATTCTC TCCGTCTTCTAAACTCTCACTAAGGAAAGGTGGTGACCATCAATGTCGGC TTGGCGGCCTCCATGGCATCGTTCCTGCTGGCAGCGGGTGCAAAAGGCAA GCGGCTGGCGCTGCCGCACTCGCGGGTGATGATCCACCAGCCGATGGGTG GGGCGCAGGGCCAAGCCGAGGACATCAAGGTCGAGGCCACGCAGATCATG CGCATCCGCGACAACATCGTGCGCATGTACTCCATGATGACGGGCCAGAC CCAGGTGAGAACAACGGAGCGGGAGGAGAGCAGAGGAGAGGGAAAAAAAG TGGAAGGAAGAAGCGGGAGAAAGCGAAAGAAGTAGCTTTGCGTTTAAGGG GCGGGGAGCTGAGAGCCATTGTGAATGGGGGAAGCGGCCTCGGCATCTAC GAGTCCATCGCTCTAACAGCAGCAGCAGGGGCAGAGGCAGCAGCGGCAGA AGCAGGAGCGGCAGAAGCAGGAGCCGCGTTTCCAGTAATGGCGGTGGCAT GCGCAATAAAAGACAGCAGTGGCAGCGGCTGCGGCGGCGGCGACGGAGGC CGTGACTGTGGCTCCCTTCCGCTACAACCACTTTATATGCCGTTGCAATT GGACGTGTCAGAAAGCACATTTACCCACTGTTTCATCGCCTCACCGCCCG CCGGCCCACTTTCTTCTTTGCGTGCCCTCTTCCTCTTCTTCTACTCTGCA GGAGCGTGTGTTGGAAGCGTTGGACCGCGACAACTTCATGAGCGCCCAGC AGGCAAAGGACTTTGGCCTCATCGACCAGGTCATCGAGCTCAAGAAGGAG TAAAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig178:360..2466+

>mRNA_P-wetherbeei_contig178.1.2 ID=mRNA_P-wetherbeei_contig178.1.2|Name=mRNA_P-wetherbeei_contig178.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig178:360..2466+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTGCCCATTATGGTTCTCTCCAAGGTTTATTTCATCCCTGCCCCA
TCTCCCCTCTGAAGCGACGTTTCTTCCTGGCCTATGTGCAAACTTCGTTG
TGAGCAGGATGAGAGCACGATTGTTGCCCGCGGCCGCGGCGCTGGCGGTT
GCCGCCTCGCGCGTCACCGCCTTCGTGCCGGGCACGTCACCGTTCGTGAC
GGGAACGATGTCTGCGGGGCTCCGAGTGTCGGCTGCCGTCTCCTCCGTCG
CGCCGCCGGCGTCACGAGCAAAATCGGGCGCGGCATCCATCGTCATGATG
CCCATCGGCGTGCCCAAGGTGGCCTACCGCGTCCCGGGAGCGTCGACGGC
AGATTGGGTGGACATTTACAACCGATTGTACCGCGAGCGCATCATCTTTT
TGGGGCAGGAGATTGACGACGAGCTCGCGAACCAAATCATCGGCGTCATG
TTGTACTTGGACTCGGAGGACAGCACCAAGCCCATCTACATGTACGTGAA
CTGCCCCGGCGGCTCCGTAATCTCCGGACTCGCCATCTACGACACCATGC
AGCACATCAAGTCGGAGGTGGTGACCATCAATGTCGGCTTGGCGGCCTCC
ATGGCATCGTTCCTGCTGGCAGCGGGTGCAAAAGGCAAGCGGCTGGCGCT
GCCGCACTCGCGGGTGATGATCCACCAGCCGATGGGTGGGGCGCAGGGCC
AAGCCGAGGACATCAAGGTCGAGGCCACGCAGATCATGCGCATCCGCGAC
AACATCGTGCGCATGTACTCCATGATGACGGGCCAGACCCAGGAGCGTGT
GTTGGAAGCGTTGGACCGCGACAACTTCATGAGCGCCCAGCAGGCAAAGG
ACTTTGGCCTCATCGACCAGGTCATCGAGCTCAAGAAGGAGTAA
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