mRNA_P-wetherbeei_contig1778.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1778.4.1
Unique NamemRNA_P-wetherbeei_contig1778.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.350e-40
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   49 ASIANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQS 399
            A+ A    KYPR G+RGAPQ F +KL+EIL+NE  +V+ WT+SG  F++ +   F  E+L+ YFR   +SSFQRQLNLYGFRKI KGPD GAY H  F RD+PE L +VRR P +Q+
Sbjct:   86 AAPAPSTQKYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRRMPQSQN 202          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.890e-38
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   52 SIANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQSA 402
            +++ Q  +YPR GKRGAPQ FA+KL+EIL NE  + + WT SG+ FV+K+   F   VL+KYFR   +SSFQRQLNLYGFRKI+KG DAGAY H  F R +PE+L++VRR P + S+
Sbjct:  149 AVSGQTQRYPRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSS 265          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.870e-38
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   73 KYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQSA 402
            KYPR G+RGAPQ F +KL+EILS E ++++ WT SG  F++K+   F   +L+KYFR   +SSFQRQLNLYGFRK+ KG D G+Y H  F RD+PE+L  VRR P +  A
Sbjct:    2 KYPRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGA 111          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.920e-38
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   73 KYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSP 387
            +YPR GKRGAPQ F +KL+EIL NE ++ + WT SG  FV+KD   F   VL+KYFR   FSSFQRQLNLYGFRKI+KG + GAYCH FF RD+ + L  VRR+P
Sbjct:   64 RYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRTP 168          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 141 bits (356), Expect = 8.930e-38
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   73 KYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQS 399
            KYPR G+RGAPQAFA+KL+EIL  E  +++ W A+G+ F ++D  RFS+E+L+KYFR + F+SFQRQLNLYGFRKIT+G DAG+Y H +F + KP++L  VRRS  + S
Sbjct:    2 KYPRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSS 110          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.720e-37
Identity = 68/120 (56.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:   49 ASIANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRS-PGTQSAK 405
            + + N   +YPRFGKRGAPQAFA KLFE+LSNE  ++V WT SG  F + D  +F+ E LIKYF+ N  +SFQRQLNLYGFRK  KG D+G + H  F RD+PE+L  VRR+   +Q+AK
Sbjct:    8 SEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAK 127          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.660e-36
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   49 ASIANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRS 384
            A+  + Q +  R GKRGAPQAFA+KL EIL+ E    + W A+GS F + D  RFSE++L KY+R + FSSFQRQLNLY FRKI KG DAG Y HP F RD+P+ LY+VRRS
Sbjct:   22 ATAGDGQRERGRIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRS 133          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 136 bits (343), Expect = 5.450e-36
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   70 GKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQS 399
            G +PR G RGAPQ FA+KL++IL  E ++V+CW   G+ F +KD  RFS+EVL+KYFR N +SSFQRQ+NLYGF+KI++GP AGA  H  F R +P++L  V+R P + S
Sbjct:    8 GDFPRTGSRGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKISRGPFAGANMHQQFLRGRPDLLVMVKRKPRSSS 117          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.210e-36
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   55 IANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSP 387
            +   Q KYPR GKRGAPQAFA KL+EIL  E  EV+ W+ +G  F +KD   F  +VL+KYFR   +SSFQRQLNLYGFRK TKG D G Y H +F R + ++L +VRR+P
Sbjct:   66 VPGDQRKYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRTP 176          
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Match: A0A6H5JVV9_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.990e-34
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:   73 KYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTASGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGAYCHPFFHRDKPEMLYYVRRSPGTQSAK 405
            KYPRFGKRGAPQAF  KL+EIL  E+ ++V WTA+G GF ++D  R S EVL ++F+++ FSSFQRQLNLYGFRKITKG ++G+Y HP F R +   L  +RRS     A+
Sbjct:   49 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPAR 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1778.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2G7U9_9STRA5.350e-4056.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WU52_9STRA2.890e-3857.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BSE7_9STRA3.870e-3855.45Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R5C8_9STRA7.920e-3861.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1QFS1_HETAK8.930e-3858.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YGA3_9STRA4.720e-3756.67HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A6H5KMN3_9PHAE3.660e-3658.93HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A6V2VRS5_HETAK5.450e-3655.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WKC6_9STRA6.210e-3656.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JVV9_9PHAE1.990e-3457.66HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1778contigP-wetherbeei_contig1778:6171..6584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps263978
PFAMsHSF_DNA-bind
Model size415
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.08e-27
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG5V@2836|Bacillariophyta
Descriptionheat shock factor
Cds size390
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.6615005-UTR-P-wetherbeei_contig1778:6170..61941683186126.6615005-UTR-P-wetherbeei_contig1778:6170..6194Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1778 6171..6194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.6730497-CDS-P-wetherbeei_contig1778:6194..65841683186126.6730497-CDS-P-wetherbeei_contig1778:6194..6584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1778 6195..6584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1778.4.1prot_P-wetherbeei_contig1778.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1778 6195..6584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1778.4.1

>prot_P-wetherbeei_contig1778.4.1 ID=prot_P-wetherbeei_contig1778.4.1|Name=mRNA_P-wetherbeei_contig1778.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MDAMPPTMASIANQQGKYPRFGKRGAPQAFAQKLFEILSNEDQEVVCWTA
SGSGFVLKDPRRFSEEVLIKYFRRNIFSSFQRQLNLYGFRKITKGPDAGA
YCHPFFHRDKPEMLYYVRRSPGTQSAKNNA
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mRNA from alignment at P-wetherbeei_contig1778:6171..6584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1778.4.1 ID=mRNA_P-wetherbeei_contig1778.4.1|Name=mRNA_P-wetherbeei_contig1778.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1778:6171..6584+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAACATCCAGGACATTGGCACCATGGACGCGATGCCGCCGACCATGGC CAGCATCGCCAACCAGCAGGGCAAGTACCCGCGCTTTGGCAAGCGTGGTG CGCCGCAGGCCTTCGCCCAGAAGCTCTTTGAGATTCTCTCCAACGAGGAC CAGGAGGTCGTGTGCTGGACGGCCTCGGGCAGCGGCTTCGTGCTCAAGGA CCCGCGGCGCTTCTCCGAGGAGGTGCTCATTAAGTACTTCCGGCGCAACA TCTTCAGCAGCTTCCAGCGCCAGCTGAACCTCTACGGCTTCCGCAAGATC ACCAAGGGGCCCGACGCCGGTGCCTACTGCCACCCGTTCTTCCACCGCGA CAAGCCTGAGATGCTCTACTACGTGCGCCGCTCGCCCGGCACGCAGTCGG CCAAGAACAATGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1778:6171..6584+

>mRNA_P-wetherbeei_contig1778.4.1 ID=mRNA_P-wetherbeei_contig1778.4.1|Name=mRNA_P-wetherbeei_contig1778.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1778:6171..6584+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCGATGCCGCCGACCATGGCCAGCATCGCCAACCAGCAGGGCAA
GTACCCGCGCTTTGGCAAGCGTGGTGCGCCGCAGGCCTTCGCCCAGAAGC
TCTTTGAGATTCTCTCCAACGAGGACCAGGAGGTCGTGTGCTGGACGGCC
TCGGGCAGCGGCTTCGTGCTCAAGGACCCGCGGCGCTTCTCCGAGGAGGT
GCTCATTAAGTACTTCCGGCGCAACATCTTCAGCAGCTTCCAGCGCCAGC
TGAACCTCTACGGCTTCCGCAAGATCACCAAGGGGCCCGACGCCGGTGCC
TACTGCCACCCGTTCTTCCACCGCGACAAGCCTGAGATGCTCTACTACGT
GCGCCGCTCGCCCGGCACGCAGTCGGCCAAGAACAATGCC
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